Wall clock time and date at job start Mon Mar 30 2020 07:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86802 * 119.99893 * 2 1 4 4 H 1.48495 * 109.47292 * 240.00546 * 3 2 1 5 5 H 1.48500 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47103 * 120.00544 * 3 2 1 7 7 C 1.39721 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00209 * 186.15185 * 7 2 1 9 9 C 1.41159 * 119.99549 * 6.15331 * 7 2 1 10 10 C 1.37698 * 122.85688 * 173.97174 * 9 7 2 11 11 S 1.71003 * 108.83522 * 179.76892 * 10 9 7 12 12 C 1.75889 * 90.80674 * 0.33882 * 11 10 9 13 13 C 1.50709 * 124.98926 * 179.91771 * 12 11 10 14 14 H 1.08998 * 110.26686 * 179.07834 * 13 12 11 15 15 C 1.54341 * 110.30185 * 56.89337 * 13 12 11 16 16 C 1.54349 * 102.39203 * 214.73135 * 15 13 12 17 17 C 1.51368 * 105.16597 * 26.35048 * 16 15 13 18 18 C 1.38498 * 130.38897 * 162.81250 * 17 16 15 19 19 C 1.38099 * 120.21797 * 179.97438 * 18 17 16 20 20 C 1.38256 * 119.93465 * 359.65689 * 19 18 17 21 21 C 1.38109 * 119.92891 * 0.65334 * 20 19 18 22 22 C 1.38209 * 109.76382 * 342.81016 * 17 16 15 23 23 N 1.28795 * 110.01713 * 359.65074 * 12 11 10 24 24 H 0.96998 * 120.00557 * 359.97438 * 1 2 3 25 25 H 1.07998 * 125.58213 * 359.97438 * 10 9 7 26 26 H 1.08994 * 110.82613 * 332.96324 * 15 13 12 27 27 H 1.09000 * 110.81655 * 96.50908 * 15 13 12 28 28 H 1.08992 * 110.30175 * 145.27433 * 16 15 13 29 29 H 1.09002 * 110.30283 * 267.43131 * 16 15 13 30 30 H 1.08007 * 119.89432 * 359.97438 * 18 17 16 31 31 H 1.08001 * 120.03346 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.03562 * 180.32643 * 20 19 18 33 33 H 1.08001 * 119.88820 * 179.65685 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0977 1.6965 -1.2125 5 1 1.2791 2.7465 0.0006 6 1 3.0980 1.6964 1.2125 7 6 2.0088 -1.2100 -0.0005 8 1 3.0841 -1.2127 0.0997 9 6 1.3091 -2.4289 -0.1321 10 6 1.9434 -3.6442 -0.2612 11 16 0.7611 -4.8732 -0.3881 12 6 -0.5267 -3.6810 -0.2706 13 6 -2.0004 -3.9943 -0.3075 14 1 -2.5836 -3.0798 -0.1995 15 6 -2.3626 -4.9979 0.8077 16 6 -3.4724 -5.8421 0.1459 17 6 -3.2019 -5.7562 -1.3409 18 6 -3.6597 -6.5447 -2.3834 19 6 -3.2743 -6.2731 -3.6814 20 6 -2.4344 -5.2066 -3.9429 21 6 -1.9717 -4.4230 -2.9040 22 6 -2.3562 -4.6946 -1.6015 23 7 -0.0253 -2.5015 -0.1429 24 1 -0.4851 0.8400 0.0004 25 1 3.0124 -3.7967 -0.2761 26 1 -1.5042 -5.6187 1.0640 27 1 -2.7432 -4.4788 1.6874 28 1 -3.4116 -6.8771 0.4822 29 1 -4.4529 -5.4256 0.3766 30 1 -4.3203 -7.3748 -2.1806 31 1 -3.6335 -6.8897 -4.4922 32 1 -2.1362 -4.9895 -4.9580 33 1 -1.3112 -3.5934 -3.1084 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088040969.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:22 Heat of formation + Delta-G solvation = 38.624955 kcal Electronic energy + Delta-G solvation = -17680.110044 eV Core-core repulsion = 14988.853913 eV Total energy + Delta-G solvation = -2691.256131 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15612 -39.59634 -36.76337 -35.13555 -32.74778 -31.15398 -29.83095 -28.48034 -27.54812 -24.15578 -23.56330 -21.78669 -21.72641 -20.59512 -19.49238 -17.42530 -17.04473 -16.96988 -16.25279 -15.99211 -15.84275 -15.08168 -14.82775 -14.40146 -14.03128 -13.99449 -13.58364 -13.47584 -13.10969 -12.96510 -12.79518 -12.59635 -12.34569 -12.24945 -12.07315 -11.86824 -11.63756 -11.54337 -11.15497 -9.97942 -9.89402 -9.70638 -9.42253 -9.22847 -8.50203 -6.43047 0.35980 0.48693 0.51724 1.09651 1.34259 1.39621 1.47741 1.75012 2.20624 2.33182 2.86355 3.39112 3.45400 3.58174 3.71293 4.15614 4.20064 4.22531 4.34941 4.40036 4.67228 4.77158 4.82930 4.88524 4.94034 5.05235 5.06574 5.17976 5.24609 5.29727 5.31608 5.49295 5.59989 5.65366 5.78422 6.12027 6.16101 6.51265 6.83830 7.64749 8.39491 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.025956 B = 0.005451 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.472852 B = 5135.723564 C = 5283.247623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.028 3.972 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.474 4.474 8 H 0.082 0.918 9 C 0.197 3.803 10 C -0.493 4.493 11 S 0.019 5.981 12 C 0.078 3.922 13 C 0.026 3.974 14 H 0.091 0.909 15 C -0.110 4.110 16 C -0.068 4.068 17 C -0.097 4.097 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.103 4.103 23 N -0.444 5.444 24 H 0.281 0.719 25 H 0.135 0.865 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.137 0.863 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 -10.129 -3.097 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.191 4.191 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.508 4.508 8 H 0.100 0.900 9 C 0.074 3.926 10 C -0.631 4.631 11 S 0.267 5.733 12 C -0.206 4.206 13 C 0.003 3.997 14 H 0.109 0.891 15 C -0.149 4.149 16 C -0.105 4.105 17 C -0.097 4.097 18 C -0.125 4.125 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.105 4.105 23 N -0.158 5.158 24 H 0.091 0.909 25 H 0.153 0.847 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.155 0.845 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.593 -10.554 -3.132 15.278 hybrid contribution 1.687 2.066 -0.013 2.667 sum -8.906 -8.488 -3.145 12.699 Atomic orbital electron populations 1.70191 1.08625 1.29495 1.32452 1.26931 0.95848 1.04493 0.91850 0.85138 0.78562 0.75197 0.80024 1.18578 1.18849 1.18155 1.19284 0.94767 0.89916 1.46840 0.90001 1.18434 0.86422 0.94068 0.93631 1.25362 1.02050 0.95940 1.39797 1.82179 0.99788 1.14673 1.76621 1.28387 0.99755 0.90261 1.02177 1.19421 0.86259 0.99643 0.94350 0.89066 1.22489 0.99509 0.96182 0.96689 1.21065 0.98940 1.01843 0.88637 1.20871 0.96895 0.94738 0.97190 1.20968 1.00425 0.99811 0.91342 1.21411 0.97248 0.97029 0.97540 1.21237 0.98633 0.96050 0.98669 1.20683 1.00131 0.99998 0.92950 1.20388 0.99342 0.97627 0.93107 1.67424 1.12119 1.21439 1.14823 0.90868 0.84729 0.91105 0.88863 0.87899 0.87935 0.82778 0.82547 0.84531 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.20 11.72 21.79 0.26 -43.94 16 2 C 0.03 1.52 5.49 85.17 0.47 1.99 16 3 Si 0.99 40.44 29.56 68.60 2.03 42.47 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.47 -27.88 9.23 23.35 0.22 -27.66 16 8 H 0.08 4.60 7.85 -2.91 -0.02 4.57 16 9 C 0.20 11.75 6.46 39.46 0.25 12.01 16 10 C -0.49 -27.11 10.98 67.69 0.74 -26.37 16 11 S 0.02 0.86 22.36 -56.49 -1.26 -0.40 16 12 C 0.08 3.76 6.05 88.56 0.54 4.29 16 13 C 0.03 0.98 3.38 -11.61 -0.04 0.94 16 14 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 15 C -0.11 -3.22 6.56 31.51 0.21 -3.01 16 16 C -0.07 -1.48 6.77 30.52 0.21 -1.27 16 17 C -0.10 -2.58 6.14 -19.60 -0.12 -2.70 16 18 C -0.11 -2.32 10.04 22.30 0.22 -2.09 16 19 C -0.11 -2.48 10.05 22.24 0.22 -2.25 16 20 C -0.13 -3.50 10.05 22.24 0.22 -3.28 16 21 C -0.12 -4.24 9.78 22.30 0.22 -4.02 16 22 C -0.10 -3.58 5.51 -19.60 -0.11 -3.68 16 23 N -0.44 -25.48 8.49 -180.35 -1.53 -27.01 16 24 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 25 H 0.13 7.16 8.06 -2.91 -0.02 7.13 16 26 H 0.07 2.18 7.29 -2.39 -0.02 2.17 16 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 33 H 0.08 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -70.33 296.23 3.86 -66.47 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 1.12 Total: 19.53 kcal Atomic # 6 Polarization: -60.36 SS G_CDS: 3.25 Total: -57.11 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -1.28 Total: -70.95 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -1.26 Total: -0.40 kcal Total: -70.33 3.86 -66.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088040969.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.099 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds