Wall clock time and date at job start Mon Mar 30 2020 07:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99625 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99540 * 3 2 1 7 7 C 1.37873 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46974 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47162 * 179.97438 * 11 10 9 13 13 O 1.42100 * 109.46939 * 289.05836 * 12 11 10 14 14 C 1.76207 * 102.99967 * 180.02562 * 12 11 10 15 15 C 1.38266 * 119.93778 * 94.99758 * 14 12 11 16 16 C 1.38086 * 120.09970 * 179.97438 * 15 14 12 17 17 C 1.38949 * 119.97446 * 0.02616 * 16 15 14 18 18 N 1.39668 * 120.06029 * 180.02562 * 17 16 15 19 19 C 1.38840 * 119.87708 * 359.97438 * 17 16 15 20 20 C 1.38349 * 119.90357 * 359.70136 * 19 17 16 21 21 F 1.35095 * 119.98955 * 180.31254 * 20 19 17 22 22 H 0.97002 * 120.00081 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00337 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 25 25 H 1.09000 * 109.47380 * 60.00553 * 10 9 7 26 26 H 1.08996 * 109.47129 * 299.99467 * 10 9 7 27 27 H 1.09004 * 109.46930 * 59.99993 * 11 10 9 28 28 H 1.09004 * 109.47059 * 300.00392 * 11 10 9 29 29 H 1.08005 * 119.94765 * 0.02562 * 15 14 12 30 30 H 1.08006 * 120.01204 * 180.02562 * 16 15 14 31 31 H 0.97005 * 120.00137 * 359.97438 * 18 17 16 32 32 H 0.97003 * 120.00245 * 180.02562 * 18 17 16 33 33 H 1.08008 * 120.05038 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0046 12 16 2.6592 -6.3658 0.0050 13 8 3.2985 -6.4427 -1.2617 14 6 1.6118 -7.7828 0.0064 15 6 1.2851 -8.4005 -1.1867 16 6 0.4650 -9.5115 -1.1895 17 6 -0.0334 -10.0095 0.0082 18 7 -0.8626 -11.1334 0.0075 19 6 0.2953 -9.3884 1.2056 20 6 1.1228 -8.2796 1.2031 21 9 1.4488 -7.6777 2.3678 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5563 0.8920 25 1 2.8720 -3.6035 0.8927 26 1 2.8719 -3.6051 -0.8873 27 1 0.8534 -5.0458 -0.8852 28 1 0.8539 -5.0437 0.8948 29 1 1.6726 -8.0140 -2.1178 30 1 0.2111 -9.9932 -2.1222 31 1 -1.0913 -11.5668 -0.8296 32 1 -1.2103 -11.4801 0.8441 33 1 -0.0909 -9.7728 2.1382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088064148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:28 Heat of formation + Delta-G solvation = -73.675579 kcal Electronic energy + Delta-G solvation = -17696.237761 eV Core-core repulsion = 14569.342688 eV Total energy + Delta-G solvation = -3126.895073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.08766 -39.33586 -35.44660 -34.71369 -34.35018 -31.95603 -30.76154 -29.06163 -27.40346 -23.45774 -23.16643 -22.61321 -20.26123 -18.31089 -17.80698 -17.43897 -16.41011 -16.13497 -15.77409 -15.48959 -15.40791 -14.57062 -14.48597 -14.13759 -14.10733 -13.29672 -13.21358 -12.71647 -12.45903 -12.23852 -11.89812 -11.61930 -11.26341 -10.95542 -10.83113 -10.71162 -10.60355 -10.12555 -9.72601 -9.27198 -9.02930 -9.01938 -8.33976 -8.31629 -7.78882 -5.96383 -3.98788 0.88920 1.08321 2.08925 2.96966 3.31449 3.34334 3.41559 3.46455 3.47868 4.11242 4.18286 4.49775 4.59126 4.82667 5.20975 5.35941 5.39350 5.57786 5.62207 5.74126 5.86754 5.90990 6.07055 6.30138 6.53531 6.59579 6.79094 6.98845 7.11463 7.26798 7.71805 7.84872 8.03770 8.45523 9.08618 9.65224 11.14938 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033918 B = 0.003635 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.311949 B = 7700.950406 C = 7850.673876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.093 4.093 11 C -0.438 4.438 12 S 1.319 4.681 13 O -0.858 6.858 14 C -0.546 4.546 15 C 0.022 3.978 16 C -0.223 4.223 17 C 0.268 3.732 18 N -0.869 5.869 19 C -0.252 4.252 20 C 0.220 3.780 21 F -0.124 7.124 22 H 0.259 0.741 23 H 0.014 0.986 24 H 0.019 0.981 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.402 0.598 32 H 0.401 0.599 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 -23.510 4.080 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.576 4.576 12 S 1.518 4.482 13 O -0.854 6.854 14 C -0.645 4.645 15 C 0.002 3.998 16 C -0.247 4.247 17 C 0.161 3.839 18 N -0.407 5.407 19 C -0.276 4.276 20 C 0.199 3.801 21 F -0.102 7.102 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.128 0.872 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.231 0.769 32 H 0.230 0.770 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.415 -23.378 4.102 23.739 hybrid contribution -1.524 0.537 -1.572 2.254 sum -1.108 -22.841 2.530 23.008 Atomic orbital electron populations 1.69979 1.06090 1.26448 1.51083 1.25034 0.94853 0.99298 0.95360 0.86532 0.80195 0.83742 0.77525 1.19630 1.21093 1.20994 1.21329 0.93199 0.91036 1.50309 0.92446 1.19098 0.93844 0.90887 0.97373 1.21313 0.98976 0.91954 1.00957 1.27776 1.11935 1.10716 1.07177 1.69564 0.87061 0.82491 1.09116 1.93035 1.63809 1.83609 1.44934 1.27599 1.20942 1.20373 0.95538 1.20742 0.90250 0.91620 0.97212 1.20707 1.05942 1.01499 0.96536 1.17558 0.87394 0.85833 0.93138 1.42569 1.54924 1.31228 1.11953 1.20453 1.08125 1.00984 0.98058 1.16704 0.92877 0.90358 0.80180 1.91548 1.90473 1.82186 1.46038 0.93099 0.96737 0.96248 0.92052 0.92900 0.89972 0.87195 0.84465 0.85518 0.76909 0.77017 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.97 5.16 -26.73 -0.14 -2.11 16 11 C -0.44 -7.67 5.88 37.16 0.22 -7.45 16 12 S 1.32 19.35 13.15 -107.50 -1.41 17.94 16 13 O -0.86 -16.91 16.77 -35.23 -0.59 -17.50 16 14 C -0.55 -7.43 5.64 -39.48 -0.22 -7.65 16 15 C 0.02 0.29 9.44 -39.63 -0.37 -0.08 16 16 C -0.22 -2.42 9.89 -39.37 -0.39 -2.81 16 17 C 0.27 2.55 6.75 -83.80 -0.57 1.99 16 18 N -0.87 -5.00 9.09 32.40 0.29 -4.70 16 19 C -0.25 -2.56 9.87 -39.32 -0.39 -2.95 16 20 C 0.22 2.63 7.25 -39.45 -0.29 2.35 16 21 F -0.12 -1.40 16.73 2.25 0.04 -1.36 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.08 1.54 8.14 -51.92 -0.42 1.12 16 28 H 0.11 1.74 8.14 -51.92 -0.42 1.32 16 29 H 0.14 1.98 7.33 -52.48 -0.38 1.59 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 31 H 0.40 1.60 8.84 -40.82 -0.36 1.24 16 32 H 0.40 1.53 8.84 -40.82 -0.36 1.17 16 33 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -36.24 305.35 -8.08 -44.32 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.03 Total: -1.55 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: -2.70 Total: -32.02 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 1.03 Total: -31.44 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.59 Total: -17.50 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 19.35 SS G_CDS: -1.41 Total: 17.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.24 -8.08 -44.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088064148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.354 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds