Wall clock time and date at job start Mon Mar 30 2020 07:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99625 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99540 * 3 2 1 7 7 C 1.37873 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46974 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47162 * 179.97438 * 11 10 9 13 13 O 1.42100 * 109.46939 * 289.05836 * 12 11 10 14 14 C 1.76207 * 102.99967 * 180.02562 * 12 11 10 15 15 C 1.38266 * 119.93778 * 94.99758 * 14 12 11 16 16 C 1.38086 * 120.09970 * 179.97438 * 15 14 12 17 17 C 1.38949 * 119.97446 * 0.02616 * 16 15 14 18 18 N 1.39668 * 120.06029 * 180.02562 * 17 16 15 19 19 C 1.38840 * 119.87708 * 359.97438 * 17 16 15 20 20 C 1.38349 * 119.90357 * 359.70136 * 19 17 16 21 21 F 1.35095 * 119.98955 * 180.31254 * 20 19 17 22 22 H 0.97002 * 120.00081 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00337 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 25 25 H 1.09000 * 109.47380 * 60.00553 * 10 9 7 26 26 H 1.08996 * 109.47129 * 299.99467 * 10 9 7 27 27 H 1.09004 * 109.46930 * 59.99993 * 11 10 9 28 28 H 1.09004 * 109.47059 * 300.00392 * 11 10 9 29 29 H 1.08005 * 119.94765 * 0.02562 * 15 14 12 30 30 H 1.08006 * 120.01204 * 180.02562 * 16 15 14 31 31 H 0.97005 * 120.00137 * 359.97438 * 18 17 16 32 32 H 0.97003 * 120.00245 * 180.02562 * 18 17 16 33 33 H 1.08008 * 120.05038 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0046 12 16 2.6592 -6.3658 0.0050 13 8 3.2985 -6.4427 -1.2617 14 6 1.6118 -7.7828 0.0064 15 6 1.2851 -8.4005 -1.1867 16 6 0.4650 -9.5115 -1.1895 17 6 -0.0334 -10.0095 0.0082 18 7 -0.8626 -11.1334 0.0075 19 6 0.2953 -9.3884 1.2056 20 6 1.1228 -8.2796 1.2031 21 9 1.4488 -7.6777 2.3678 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5563 0.8920 25 1 2.8720 -3.6035 0.8927 26 1 2.8719 -3.6051 -0.8873 27 1 0.8534 -5.0458 -0.8852 28 1 0.8539 -5.0437 0.8948 29 1 1.6726 -8.0140 -2.1178 30 1 0.2111 -9.9932 -2.1222 31 1 -1.0913 -11.5668 -0.8296 32 1 -1.2103 -11.4801 0.8441 33 1 -0.0909 -9.7728 2.1382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088064148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:27 Heat of formation + Delta-G solvation = -99.686924 kcal Electronic energy + Delta-G solvation = -17697.365698 eV Core-core repulsion = 14569.342688 eV Total energy + Delta-G solvation = -3128.023009 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.97942 -40.16637 -36.85283 -36.30305 -35.48158 -34.01323 -31.62436 -29.90909 -29.35020 -25.39286 -24.06488 -23.55737 -22.08653 -19.30145 -18.75094 -18.48169 -18.21674 -17.34920 -16.72456 -16.55705 -16.31225 -16.17308 -16.10595 -15.61830 -15.04206 -14.42204 -14.22235 -14.12429 -13.98638 -13.73865 -13.53554 -13.06946 -12.70924 -12.62995 -12.46371 -12.35485 -11.83506 -11.79648 -11.59304 -11.29026 -10.86135 -10.56712 -9.90341 -9.47046 -8.73733 -8.20047 -6.31997 -0.07751 0.20089 0.93956 1.40614 1.41242 1.55276 1.80529 2.41724 2.54571 2.68286 2.88956 3.12607 3.32663 3.71162 4.02641 4.08036 4.18633 4.36325 4.55469 4.61950 4.75312 4.85977 4.94758 5.08924 5.14415 5.17107 5.20207 5.50312 5.69692 5.70610 5.83520 6.23200 6.34147 6.84880 6.84972 7.37451 8.91904 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033918 B = 0.003635 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.311949 B = 7700.950406 C = 7850.673876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.087 4.087 11 C -0.444 4.444 12 S 1.384 4.616 13 O -0.911 6.911 14 C -0.572 4.572 15 C 0.000 4.000 16 C -0.226 4.226 17 C 0.280 3.720 18 N -0.847 5.847 19 C -0.252 4.252 20 C 0.219 3.781 21 F -0.121 7.121 22 H 0.264 0.736 23 H -0.021 1.021 24 H 0.004 0.996 25 H 0.088 0.912 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.414 0.586 32 H 0.415 0.585 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 -25.185 5.340 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.011 4.011 10 C -0.126 4.126 11 C -0.581 4.581 12 S 1.584 4.416 13 O -0.907 6.907 14 C -0.673 4.673 15 C -0.020 4.020 16 C -0.250 4.250 17 C 0.169 3.831 18 N -0.385 5.385 19 C -0.277 4.277 20 C 0.197 3.803 21 F -0.099 7.099 22 H 0.072 0.928 23 H -0.003 1.003 24 H 0.022 0.978 25 H 0.106 0.894 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.166 0.834 31 H 0.245 0.755 32 H 0.246 0.754 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.332 -25.060 5.364 25.630 hybrid contribution -1.655 0.816 -1.951 2.685 sum -1.323 -24.244 3.413 24.519 Atomic orbital electron populations 1.70113 1.07898 1.27748 1.51792 1.26034 0.95822 1.03548 0.94644 0.85354 0.79157 0.78463 0.77815 1.18375 1.20686 1.19874 1.21786 0.93786 0.92322 1.50464 0.91818 1.19020 0.94342 0.92896 0.94857 1.21133 0.98028 0.91909 1.01520 1.27826 1.12527 1.10779 1.06925 1.68907 0.85120 0.81138 1.06479 1.92919 1.65817 1.84610 1.47326 1.27197 1.23096 1.20277 0.96742 1.20708 0.91733 0.93164 0.96412 1.20895 1.05169 1.00720 0.98205 1.17623 0.86804 0.86231 0.92423 1.42585 1.52946 1.29454 1.13532 1.20768 1.07230 1.00140 0.99516 1.16763 0.93014 0.90901 0.79601 1.91558 1.90478 1.82242 1.45618 0.92753 1.00266 0.97768 0.89365 0.94354 0.92153 0.85519 0.86512 0.83409 0.75516 0.75393 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.53 13.29 21.44 0.28 -58.24 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 8 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.03 1.50 4.97 29.85 0.15 1.65 16 10 C -0.09 -3.81 5.16 30.60 0.16 -3.65 16 11 C -0.44 -16.06 5.88 71.98 0.42 -15.64 16 12 S 1.38 41.26 13.15 -56.49 -0.74 40.52 16 13 O -0.91 -37.14 16.77 -148.98 -2.50 -39.64 16 14 C -0.57 -15.39 5.64 22.34 0.13 -15.27 16 15 C 0.00 0.00 9.44 22.24 0.21 0.21 16 16 C -0.23 -4.50 9.89 22.40 0.22 -4.27 16 17 C 0.28 4.45 6.75 38.21 0.26 4.70 16 18 N -0.85 -6.28 9.09 -51.39 -0.47 -6.75 16 19 C -0.25 -4.34 9.87 22.44 0.22 -4.11 16 20 C 0.22 4.86 7.25 22.36 0.16 5.02 16 21 F -0.12 -2.50 16.73 44.97 0.75 -1.74 16 22 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 23 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 24 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 25 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.13 4.05 8.14 -2.39 -0.02 4.03 16 29 H 0.12 3.56 7.33 -2.91 -0.02 3.54 16 30 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.41 1.62 8.84 -92.70 -0.82 0.80 16 32 H 0.41 1.29 8.84 -92.71 -0.82 0.47 16 33 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -80.38 305.35 1.48 -78.90 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -0.50 Total: 2.67 kcal Atomic # 6 Polarization: -65.73 SS G_CDS: 2.62 Total: -63.10 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.18 Total: -65.00 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -2.50 Total: -39.64 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.75 Total: -1.74 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 41.26 SS G_CDS: -0.74 Total: 40.52 kcal Total: -80.38 1.48 -78.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088064148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.787 kcal (2) G-P(sol) polarization free energy of solvation -80.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds