Wall clock time and date at job start Mon Mar 30 2020 07:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46929 * 2 1 4 4 S 1.49351 * 120.00149 * 179.97438 * 3 2 1 5 5 O 1.42099 * 108.33586 * 179.97438 * 4 3 2 6 6 C 1.76191 * 108.73434 * 297.53453 * 4 3 2 7 7 H 1.08002 * 120.00108 * 117.53432 * 6 4 3 8 8 C 1.37872 * 120.00298 * 297.52639 * 6 4 3 9 9 N 1.31521 * 119.99667 * 0.02562 * 8 6 4 10 10 Si 1.86797 * 120.00438 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47072 * 90.00188 * 10 8 6 12 12 H 1.48497 * 109.47442 * 210.00281 * 10 8 6 13 13 H 1.48500 * 109.47128 * 330.00465 * 10 8 6 14 14 C 1.81408 * 108.33010 * 55.06585 * 4 3 2 15 15 C 1.50706 * 109.46846 * 62.21024 * 14 4 3 16 16 C 1.38241 * 119.97263 * 269.72523 * 15 14 4 17 17 C 1.38204 * 120.02246 * 179.73094 * 16 15 14 18 18 C 1.38459 * 119.97363 * 0.56695 * 17 16 15 19 19 F 1.35093 * 120.02653 * 179.68354 * 18 17 16 20 20 C 1.38456 * 119.94907 * 359.70518 * 18 17 16 21 21 C 1.38204 * 119.97569 * 0.02562 * 20 18 17 22 22 H 1.09003 * 109.47463 * 300.00056 * 1 2 3 23 23 H 1.08996 * 109.47343 * 59.99964 * 1 2 3 24 24 H 1.09007 * 109.46789 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47316 * 240.00112 * 2 1 3 26 26 H 1.09005 * 109.47064 * 119.99514 * 2 1 3 27 27 H 0.97001 * 119.99627 * 179.97438 * 9 8 6 28 28 H 1.09000 * 109.46602 * 302.21271 * 14 4 3 29 29 H 1.09000 * 109.47286 * 182.21002 * 14 4 3 30 30 H 1.07994 * 119.98892 * 359.97438 * 16 15 14 31 31 H 1.08002 * 120.01255 * 180.25727 * 17 16 15 32 32 H 1.08001 * 120.01665 * 179.97438 * 20 18 17 33 33 H 1.08001 * 119.98560 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.4866 1.6542 0.0006 5 8 3.6796 3.0621 -0.0002 6 6 4.1834 0.9996 1.4805 7 1 4.9224 0.2137 1.4279 8 6 3.7853 1.4905 2.7059 9 7 2.8851 2.4472 2.7700 10 14 4.5234 0.7959 4.2750 11 1 5.7368 1.5717 4.6369 12 1 3.5293 0.8907 5.3740 13 1 4.8911 -0.6269 4.0615 14 6 4.2284 0.7888 -1.4107 15 6 3.6493 1.3300 -2.6925 16 6 2.5170 0.7530 -3.2366 17 6 1.9819 1.2519 -4.4091 18 6 2.5871 2.3227 -5.0450 19 9 2.0686 2.8072 -6.1946 20 6 3.7243 2.8962 -4.5021 21 6 4.2545 2.3991 -3.3266 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.6048 2.7923 3.6321 28 1 4.0138 -0.2773 -1.3367 29 1 5.3073 0.9436 -1.4056 30 1 2.0482 -0.0855 -2.7432 31 1 1.0949 0.8037 -4.8318 32 1 4.1975 3.7311 -4.9974 33 1 5.1418 2.8460 -2.9031 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107931501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:19 Heat of formation + Delta-G solvation = -63.842301 kcal Electronic energy + Delta-G solvation = -18798.005525 eV Core-core repulsion = 15671.536855 eV Total energy + Delta-G solvation = -3126.468670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.90531 -40.09214 -36.53790 -35.49401 -34.97924 -33.40917 -32.11261 -29.89853 -28.28524 -27.66233 -24.07805 -23.01214 -22.60828 -20.38872 -18.67726 -18.09249 -17.44003 -17.43075 -16.77300 -16.60604 -16.25796 -15.90573 -15.43081 -15.13721 -14.85877 -14.51699 -14.40099 -13.78896 -13.42607 -13.31970 -13.16429 -13.03356 -12.83733 -12.78213 -12.58971 -12.22856 -12.15279 -11.88060 -11.80356 -11.26085 -11.09388 -10.08893 -9.86914 -9.35803 -8.90068 -8.45464 -7.37820 -0.29246 0.25576 0.37334 1.36302 1.37605 1.51512 2.23112 2.59838 2.66144 3.23024 3.29895 3.49228 3.66265 3.86694 3.90440 3.96186 4.26905 4.37858 4.51182 4.59383 4.64433 4.80216 4.87023 4.94717 5.02644 5.07206 5.12650 5.22464 5.29963 5.45109 5.48234 5.57781 5.89215 5.92144 6.57343 6.89389 8.31306 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030115 B = 0.005924 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.550032 B = 4725.706528 C = 5184.352554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.108 3.892 3 N -1.132 6.132 4 S 2.400 3.600 5 O -1.003 7.003 6 C -1.007 5.007 7 H 0.119 0.881 8 C 0.077 3.923 9 N -0.855 5.855 10 Si 0.976 3.024 11 H -0.262 1.262 12 H -0.269 1.269 13 H -0.243 1.243 14 C -0.581 4.581 15 C -0.083 4.083 16 C -0.084 4.084 17 C -0.148 4.148 18 C 0.078 3.922 19 F -0.143 7.143 20 C -0.153 4.153 21 C -0.104 4.104 22 H 0.028 0.972 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.026 0.974 27 H 0.289 0.711 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.153 0.847 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 -7.885 -9.554 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.023 4.023 3 N -1.030 6.030 4 S 2.588 3.412 5 O -0.991 6.991 6 C -1.145 5.145 7 H 0.137 0.863 8 C -0.139 4.139 9 N -0.483 5.483 10 Si 0.795 3.205 11 H -0.187 1.187 12 H -0.194 1.194 13 H -0.166 1.166 14 C -0.710 4.710 15 C -0.085 4.085 16 C -0.103 4.103 17 C -0.167 4.167 18 C 0.059 3.941 19 F -0.122 7.122 20 C -0.172 4.172 21 C -0.123 4.123 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.171 0.829 29 H 0.154 0.846 30 H 0.170 0.830 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.896 -6.444 -9.598 11.595 hybrid contribution 0.897 -0.598 0.832 1.362 sum 1.793 -7.042 -8.766 11.386 Atomic orbital electron populations 1.21450 0.94312 1.01051 1.00866 1.20971 0.97368 0.85588 0.98345 1.75272 1.19586 1.26592 1.81581 1.10230 0.75509 0.77111 0.78317 1.93184 1.87180 1.30590 1.88183 1.30327 1.40250 1.34259 1.09642 0.86284 1.25833 0.92050 0.92147 1.03829 1.70230 1.25829 1.23002 1.29284 0.85328 0.78786 0.80392 0.75981 1.18662 1.19407 1.16558 1.29481 1.12889 1.15125 1.13487 1.19267 0.96985 0.97190 0.95026 1.21210 0.94309 1.00215 0.94584 1.21369 1.01953 0.96775 0.96587 1.17865 0.95289 0.96550 0.84423 1.91468 1.86313 1.87407 1.46991 1.21304 0.96421 1.02124 0.97324 1.21205 1.00805 0.95590 0.94703 0.95281 0.93008 0.90239 0.92786 0.95530 0.90165 0.82918 0.84592 0.82990 0.82057 0.82579 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 10.24 71.98 0.74 -3.30 16 2 C 0.11 4.19 6.46 86.38 0.56 4.75 16 3 N -1.13 -55.55 10.50 -187.49 -1.97 -57.52 16 4 S 2.40 116.29 3.31 -56.49 -0.19 116.10 16 5 O -1.00 -60.15 17.77 -148.98 -2.65 -62.80 16 6 C -1.01 -50.39 9.34 67.73 0.63 -49.76 16 7 H 0.12 5.20 7.81 -2.91 -0.02 5.18 16 8 C 0.08 4.06 5.46 84.65 0.46 4.52 16 9 N -0.86 -49.56 12.93 21.45 0.28 -49.29 16 10 Si 0.98 39.11 29.54 68.60 2.03 41.14 16 11 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 12 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 13 H -0.24 -8.85 7.11 99.48 0.71 -8.14 16 14 C -0.58 -19.74 5.69 71.24 0.41 -19.33 16 15 C -0.08 -2.79 5.13 -19.86 -0.10 -2.89 16 16 C -0.08 -2.50 9.65 22.26 0.21 -2.29 16 17 C -0.15 -4.03 10.03 22.31 0.22 -3.81 16 18 C 0.08 2.26 7.30 22.37 0.16 2.42 16 19 F -0.14 -3.99 17.27 44.97 0.78 -3.21 16 20 C -0.15 -4.43 10.03 22.31 0.22 -4.21 16 21 C -0.10 -3.36 9.70 22.26 0.22 -3.14 16 22 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.05 1.66 5.27 -2.39 -0.01 1.65 16 26 H 0.03 1.07 7.86 -2.38 -0.02 1.05 16 27 H 0.29 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.15 4.18 7.39 -2.39 -0.02 4.16 16 29 H 0.14 4.04 8.08 -2.39 -0.02 4.02 16 30 H 0.15 3.87 6.23 -2.91 -0.02 3.85 16 31 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 33 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -72.52 301.22 3.12 -69.39 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 1.11 Total: 23.21 kcal Atomic # 6 Polarization: -80.77 SS G_CDS: 3.74 Total: -77.03 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -1.69 Total: -106.80 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -2.65 Total: -62.80 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Atomic # 16 Polarization: 116.29 SS G_CDS: -0.19 Total: 116.10 kcal Total: -72.52 3.12 -69.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107931501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.549 kcal (2) G-P(sol) polarization free energy of solvation -72.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds