Wall clock time and date at job start Mon Mar 30 2020 07:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47219 * 2 1 4 4 N 1.46499 * 109.47326 * 119.99835 * 2 1 3 5 5 C 1.34774 * 120.00380 * 275.00899 * 4 2 1 6 6 O 1.21694 * 119.99868 * 359.97438 * 5 4 2 7 7 C 1.46371 * 120.00449 * 179.97438 * 5 4 2 8 8 H 1.08004 * 119.99897 * 359.97438 * 7 5 4 9 9 C 1.40044 * 120.00611 * 179.97438 * 7 5 4 10 10 N 1.30677 * 119.99519 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00427 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46926 * 60.00069 * 11 9 7 13 13 H 1.48496 * 109.47005 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46960 * 300.00226 * 11 9 7 15 15 C 1.50703 * 109.47187 * 240.00175 * 2 1 3 16 16 C 1.38263 * 119.96806 * 279.97503 * 15 2 1 17 17 C 1.38194 * 120.05047 * 179.97438 * 16 15 2 18 18 C 1.38444 * 119.98557 * 0.02562 * 17 16 15 19 19 F 1.35103 * 120.03218 * 179.97438 * 18 17 16 20 20 C 1.38558 * 119.93840 * 359.74934 * 18 17 16 21 21 Cl 1.73599 * 120.02362 * 180.27703 * 20 18 17 22 22 C 1.38215 * 119.96843 * 100.00274 * 15 2 1 23 23 H 1.08993 * 109.46765 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47008 * 299.99802 * 1 2 3 25 25 H 1.08995 * 109.46908 * 59.99727 * 1 2 3 26 26 H 0.96999 * 119.99678 * 94.99392 * 4 2 1 27 27 H 0.97000 * 120.00020 * 179.97438 * 10 9 7 28 28 H 1.08005 * 119.97571 * 359.97438 * 16 15 2 29 29 H 1.07999 * 120.01044 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.99244 * 359.97438 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8579 1.1625 2.4118 7 6 2.6344 -0.7084 3.5524 8 1 2.8907 -1.7565 3.5041 9 6 2.7686 -0.0097 4.7587 10 7 2.4581 1.2582 4.8173 11 14 3.3899 -0.8907 6.2843 12 1 4.7508 -1.4263 6.0267 13 1 3.4399 0.0636 7.4210 14 1 2.4725 -2.0096 6.6179 15 6 2.0324 -0.7104 -1.2305 16 6 2.0670 -2.0922 -1.2645 17 6 2.5268 -2.7453 -2.3922 18 6 2.9537 -2.0158 -3.4886 19 9 3.4040 -2.6534 -4.5914 20 6 2.9144 -0.6311 -3.4557 21 17 3.4424 0.2858 -4.8320 22 6 2.4586 0.0200 -2.3237 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 2.2490 -1.6317 1.1526 27 1 2.5506 1.7421 5.6529 28 1 1.7344 -2.6615 -0.4091 29 1 2.5540 -3.8247 -2.4179 30 1 2.4311 1.0993 -2.2959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133124575.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:04 Heat of formation + Delta-G solvation = -73.605165 kcal Electronic energy + Delta-G solvation = -17809.678544 eV Core-core repulsion = 14544.909724 eV Total energy + Delta-G solvation = -3264.768820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.02930 -39.62950 -37.43155 -36.60787 -34.30133 -32.44721 -31.23761 -30.37266 -28.70740 -26.16720 -23.62937 -23.31167 -21.13949 -19.39970 -18.10058 -17.38726 -16.60286 -15.92816 -15.82613 -15.36813 -14.73520 -14.32922 -13.94167 -13.67346 -13.61613 -13.35527 -12.92316 -12.65561 -12.40132 -11.81084 -11.70602 -11.53890 -11.27376 -11.15661 -11.03443 -10.91106 -10.58624 -10.46715 -10.27680 -9.08964 -8.89428 -8.64420 -7.69053 -7.63934 -6.23358 -4.69581 0.88041 0.99354 1.88848 3.13096 3.18437 3.19892 3.35073 3.98184 4.06536 4.50059 4.53414 4.63132 4.82175 5.03996 5.13075 5.41217 5.63737 5.67220 5.80441 5.85899 5.94902 6.02607 6.14330 6.23880 6.54740 6.60342 6.75784 7.38703 7.83085 7.99686 8.25760 8.97702 9.43861 10.54143 10.72138 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.031157 B = 0.004086 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.465785 B = 6850.875762 C = 7132.079591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.189 3.811 3 H 0.089 0.911 4 N -0.761 5.761 5 C 0.556 3.444 6 O -0.578 6.578 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.908 3.092 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.268 1.268 15 C -0.069 4.069 16 C -0.079 4.079 17 C -0.139 4.139 18 C 0.096 3.904 19 F -0.132 7.132 20 C -0.070 4.070 21 Cl -0.057 7.057 22 C -0.077 4.077 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.379 0.621 27 H 0.269 0.731 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 -6.583 -14.023 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.082 3.918 3 H 0.107 0.893 4 N -0.417 5.417 5 C 0.361 3.639 6 O -0.461 6.461 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.395 5.395 11 Si 0.732 3.268 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.193 1.193 15 C -0.070 4.070 16 C -0.097 4.097 17 C -0.157 4.157 18 C 0.076 3.924 19 F -0.110 7.110 20 C -0.098 4.098 21 Cl -0.028 7.028 22 C -0.096 4.096 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.212 0.788 27 H 0.080 0.920 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.630 -5.453 -14.021 15.057 hybrid contribution 0.593 -0.973 0.337 1.189 sum -0.036 -6.426 -13.683 15.117 Atomic orbital electron populations 1.22173 0.95413 1.01537 1.02095 1.19423 0.93354 0.96913 0.82082 0.89295 1.46320 1.73419 1.12823 1.09145 1.18211 0.77826 0.86416 0.81495 1.90605 1.54776 1.16333 1.84367 1.20831 1.46977 0.97125 0.93299 0.91487 1.25690 0.93303 0.94466 0.99694 1.70002 1.34935 1.08168 1.26433 0.86436 0.79899 0.79727 0.80718 1.19282 1.20545 1.19280 1.20362 0.97015 0.93823 0.95824 1.21024 0.97176 0.94066 0.97461 1.21104 1.01490 1.00894 0.92259 1.17385 1.01503 0.88560 0.84926 1.91517 1.86753 1.81764 1.51014 1.20938 1.06633 0.90345 0.91867 1.98375 1.88961 1.73543 1.41919 1.20900 0.97107 1.01124 0.90434 0.93044 0.91104 0.92976 0.78815 0.91999 0.84069 0.83842 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.46 37.16 0.35 -2.13 16 2 C 0.19 3.31 2.78 -69.08 -0.19 3.12 16 3 H 0.09 1.76 7.44 -51.93 -0.39 1.38 16 4 N -0.76 -15.71 5.02 -56.34 -0.28 -16.00 16 5 C 0.56 15.01 7.71 -12.99 -0.10 14.91 16 6 O -0.58 -17.83 14.68 5.19 0.08 -17.76 16 7 C -0.55 -14.83 9.54 -35.63 -0.34 -15.17 16 8 H 0.07 1.66 7.85 -52.48 -0.41 1.25 16 9 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 10 N -0.77 -22.41 11.83 55.55 0.66 -21.76 16 11 Si 0.91 19.62 29.56 -169.99 -5.02 14.60 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 13 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 15 C -0.07 -0.98 4.95 -104.62 -0.52 -1.49 16 16 C -0.08 -0.97 9.05 -39.59 -0.36 -1.33 16 17 C -0.14 -1.56 10.03 -39.52 -0.40 -1.95 16 18 C 0.10 1.22 7.28 -39.39 -0.29 0.93 16 19 F -0.13 -1.70 16.84 2.25 0.04 -1.66 16 20 C -0.07 -0.91 6.33 -39.43 -0.25 -1.16 16 21 Cl -0.06 -0.69 28.62 -51.86 -1.48 -2.18 16 22 C -0.08 -1.01 9.45 -39.56 -0.37 -1.39 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.38 6.81 6.84 -40.82 -0.28 6.53 16 27 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 28 H 0.14 1.56 6.91 -52.48 -0.36 1.19 16 29 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.14 1.76 8.04 -52.49 -0.42 1.34 16 LS Contribution 287.79 15.07 4.34 4.34 Total: -1.00 -31.96 287.79 -6.93 -38.89 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.69 Total: 4.88 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.56 Total: -3.36 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.37 Total: -37.75 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.08 Total: -17.76 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.96 -6.93 -38.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133124575.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.715 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds