Wall clock time and date at job start Mon Mar 30 2020 07:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47219 * 2 1 4 4 N 1.46499 * 109.47326 * 119.99835 * 2 1 3 5 5 C 1.34774 * 120.00380 * 275.00899 * 4 2 1 6 6 O 1.21694 * 119.99868 * 359.97438 * 5 4 2 7 7 C 1.46371 * 120.00449 * 179.97438 * 5 4 2 8 8 H 1.08004 * 119.99897 * 359.97438 * 7 5 4 9 9 C 1.40044 * 120.00611 * 179.97438 * 7 5 4 10 10 N 1.30677 * 119.99519 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00427 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46926 * 60.00069 * 11 9 7 13 13 H 1.48496 * 109.47005 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46960 * 300.00226 * 11 9 7 15 15 C 1.50703 * 109.47187 * 240.00175 * 2 1 3 16 16 C 1.38263 * 119.96806 * 279.97503 * 15 2 1 17 17 C 1.38194 * 120.05047 * 179.97438 * 16 15 2 18 18 C 1.38444 * 119.98557 * 0.02562 * 17 16 15 19 19 F 1.35103 * 120.03218 * 179.97438 * 18 17 16 20 20 C 1.38558 * 119.93840 * 359.74934 * 18 17 16 21 21 Cl 1.73599 * 120.02362 * 180.27703 * 20 18 17 22 22 C 1.38215 * 119.96843 * 100.00274 * 15 2 1 23 23 H 1.08993 * 109.46765 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47008 * 299.99802 * 1 2 3 25 25 H 1.08995 * 109.46908 * 59.99727 * 1 2 3 26 26 H 0.96999 * 119.99678 * 94.99392 * 4 2 1 27 27 H 0.97000 * 120.00020 * 179.97438 * 10 9 7 28 28 H 1.08005 * 119.97571 * 359.97438 * 16 15 2 29 29 H 1.07999 * 120.01044 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.99244 * 359.97438 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8579 1.1625 2.4118 7 6 2.6344 -0.7084 3.5524 8 1 2.8907 -1.7565 3.5041 9 6 2.7686 -0.0097 4.7587 10 7 2.4581 1.2582 4.8173 11 14 3.3899 -0.8907 6.2843 12 1 4.7508 -1.4263 6.0267 13 1 3.4399 0.0636 7.4210 14 1 2.4725 -2.0096 6.6179 15 6 2.0324 -0.7104 -1.2305 16 6 2.0670 -2.0922 -1.2645 17 6 2.5268 -2.7453 -2.3922 18 6 2.9537 -2.0158 -3.4886 19 9 3.4040 -2.6534 -4.5914 20 6 2.9144 -0.6311 -3.4557 21 17 3.4424 0.2858 -4.8320 22 6 2.4586 0.0200 -2.3237 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 2.2490 -1.6317 1.1526 27 1 2.5506 1.7421 5.6529 28 1 1.7344 -2.6615 -0.4091 29 1 2.5540 -3.8247 -2.4179 30 1 2.4311 1.0993 -2.2959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133124575.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:03 Heat of formation + Delta-G solvation = -93.940873 kcal Electronic energy + Delta-G solvation = -17810.560366 eV Core-core repulsion = 14544.909724 eV Total energy + Delta-G solvation = -3265.650643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.02500 -40.80121 -39.17347 -37.68351 -35.92104 -34.50316 -32.41444 -31.77654 -29.97266 -28.15839 -24.89962 -24.33207 -22.60442 -21.09721 -19.54733 -18.75410 -17.78831 -17.44305 -17.04588 -16.82321 -16.02413 -15.96539 -15.15433 -15.05234 -14.90614 -14.53687 -14.33417 -14.14830 -13.83842 -13.36840 -13.22909 -12.78422 -12.70219 -12.57584 -12.46058 -12.35506 -12.18408 -12.03152 -11.81126 -10.89090 -10.07282 -9.88090 -9.65851 -9.46656 -8.25848 -6.82040 -0.14749 0.00589 0.89807 1.43014 1.45751 1.57216 2.25587 2.33727 2.51553 2.99183 3.10270 3.49385 3.62093 3.69141 4.05050 4.12205 4.25061 4.46746 4.57449 4.71580 4.80603 4.86091 4.97839 5.03042 5.30270 5.34944 5.37148 5.61954 5.91307 6.25773 6.29825 6.90605 7.57318 8.52920 8.70782 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.031157 B = 0.004086 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.465785 B = 6850.875762 C = 7132.079591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.190 3.810 3 H 0.057 0.943 4 N -0.747 5.747 5 C 0.542 3.458 6 O -0.628 6.628 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.031 3.969 10 N -0.822 5.822 11 Si 0.994 3.006 12 H -0.256 1.256 13 H -0.277 1.277 14 H -0.254 1.254 15 C -0.079 4.079 16 C -0.075 4.075 17 C -0.124 4.124 18 C 0.093 3.907 19 F -0.132 7.132 20 C -0.077 4.077 21 Cl -0.053 7.053 22 C -0.080 4.080 23 H 0.071 0.929 24 H 0.031 0.969 25 H 0.077 0.923 26 H 0.395 0.605 27 H 0.273 0.727 28 H 0.157 0.843 29 H 0.176 0.824 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -9.213 -14.363 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.085 3.915 3 H 0.075 0.925 4 N -0.402 5.402 5 C 0.346 3.654 6 O -0.515 6.515 7 C -0.610 4.610 8 H 0.107 0.893 9 C -0.184 4.184 10 N -0.451 5.451 11 Si 0.814 3.186 12 H -0.180 1.180 13 H -0.202 1.202 14 H -0.178 1.178 15 C -0.080 4.080 16 C -0.093 4.093 17 C -0.143 4.143 18 C 0.073 3.927 19 F -0.111 7.111 20 C -0.105 4.105 21 Cl -0.024 7.024 22 C -0.099 4.099 23 H 0.090 0.910 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.230 0.770 27 H 0.083 0.917 28 H 0.174 0.826 29 H 0.194 0.806 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.179 -8.131 -14.418 16.554 hybrid contribution 0.448 -0.163 0.302 0.565 sum 0.269 -8.294 -14.116 16.375 Atomic orbital electron populations 1.22073 0.94301 1.02623 1.01411 1.19392 0.94246 0.95502 0.82380 0.92488 1.45928 1.72279 1.13371 1.08672 1.18526 0.77503 0.86031 0.83313 1.90564 1.56812 1.18498 1.85640 1.21408 1.47249 0.98314 0.94026 0.89340 1.26912 0.92810 0.95086 1.03630 1.70179 1.36666 1.10501 1.27768 0.85120 0.79706 0.78395 0.75397 1.17972 1.20227 1.17756 1.19991 0.98859 0.94656 0.94508 1.21162 0.96671 0.93098 0.98379 1.21368 0.99648 1.02364 0.90885 1.17584 1.01321 0.88481 0.85300 1.91521 1.86744 1.81687 1.51144 1.20977 1.06827 0.90769 0.91901 1.98377 1.88898 1.73563 1.41563 1.20887 0.97147 1.01368 0.90484 0.90990 0.94940 0.90448 0.76997 0.91681 0.82559 0.80637 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.46 71.98 0.68 -4.00 16 2 C 0.19 6.74 2.78 44.25 0.12 6.86 16 3 H 0.06 2.38 7.44 -2.38 -0.02 2.36 16 4 N -0.75 -30.90 5.02 -450.38 -2.26 -33.16 16 5 C 0.54 30.00 7.71 86.36 0.67 30.66 16 6 O -0.63 -40.58 14.68 -4.33 -0.06 -40.64 16 7 C -0.57 -31.27 9.54 24.83 0.24 -31.03 16 8 H 0.09 4.27 7.85 -2.91 -0.02 4.24 16 9 C 0.03 1.68 5.50 85.30 0.47 2.14 16 10 N -0.82 -49.40 11.83 21.83 0.26 -49.15 16 11 Si 0.99 39.86 29.56 68.60 2.03 41.89 16 12 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 13 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 14 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 15 C -0.08 -2.13 4.95 -19.86 -0.10 -2.23 16 16 C -0.07 -1.62 9.05 22.27 0.20 -1.42 16 17 C -0.12 -2.35 10.03 22.31 0.22 -2.13 16 18 C 0.09 2.11 7.28 22.40 0.16 2.27 16 19 F -0.13 -3.07 16.84 44.97 0.76 -2.31 16 20 C -0.08 -1.88 6.33 22.37 0.14 -1.73 16 21 Cl -0.05 -1.23 28.62 -2.72 -0.08 -1.30 16 22 C -0.08 -2.04 9.45 22.28 0.21 -1.83 16 23 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.39 13.66 6.84 -92.71 -0.63 13.03 16 27 H 0.27 14.98 8.29 -92.71 -0.77 14.21 16 28 H 0.16 2.91 6.91 -2.91 -0.02 2.89 16 29 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 30 H 0.15 3.59 8.04 -2.91 -0.02 3.56 16 Total: -1.00 -71.47 287.79 4.21 -67.26 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.55 Total: 19.86 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 3.02 Total: -2.45 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -2.00 Total: -82.31 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.06 Total: -40.64 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.76 Total: -2.31 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.30 kcal Total: -71.47 4.21 -67.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133124575.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.677 kcal (2) G-P(sol) polarization free energy of solvation -71.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds