Wall clock time and date at job start Mon Mar 30 2020 07:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 108.90582 * 2 1 4 4 C 1.52697 * 108.85647 * 241.36810 * 2 1 3 5 5 C 1.50927 * 109.56252 * 286.40324 * 4 2 1 6 6 S 1.70215 * 127.94058 * 147.85112 * 5 4 2 7 7 C 1.76024 * 90.67333 * 178.86919 * 6 5 4 8 8 C 1.39871 * 125.26303 * 180.21126 * 7 6 5 9 9 H 1.08007 * 119.99973 * 6.65038 * 8 7 6 10 10 C 1.40179 * 120.00045 * 186.65427 * 8 7 6 11 11 N 1.30733 * 120.00039 * 174.68273 * 10 8 7 12 12 Si 1.86793 * 119.99860 * 354.67865 * 10 8 7 13 13 H 1.48496 * 109.47153 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47346 * 299.99895 * 12 10 8 15 15 H 1.48493 * 109.47273 * 60.00280 * 12 10 8 16 16 N 1.31502 * 109.47278 * 0.48115 * 7 6 5 17 17 C 1.31158 * 116.39544 * 359.73198 * 16 7 6 18 18 C 1.49342 * 127.13185 * 178.55106 * 17 16 7 19 19 C 1.38799 * 121.09767 * 15.18892 * 18 17 16 20 20 C 1.38209 * 119.41723 * 178.59746 * 19 18 17 21 21 C 1.38384 * 119.84451 * 359.77606 * 20 19 18 22 22 C 1.38271 * 120.69319 * 0.74793 * 21 20 19 23 23 C 1.38296 * 120.15642 * 0.07510 * 22 21 20 24 24 H 1.08999 * 109.47312 * 301.32366 * 1 2 3 25 25 H 1.09007 * 109.47391 * 61.32329 * 1 2 3 26 26 H 1.08995 * 109.46871 * 181.31895 * 1 2 3 27 27 H 1.08998 * 109.45856 * 166.37006 * 4 2 1 28 28 H 1.09002 * 109.45139 * 46.42940 * 4 2 1 29 29 H 0.96996 * 119.99691 * 355.47289 * 11 10 8 30 30 H 1.07999 * 120.28947 * 358.52891 * 19 18 17 31 31 H 1.07996 * 120.08499 * 179.80095 * 20 19 18 32 32 H 1.07992 * 119.65577 * 180.72894 * 21 20 19 33 33 H 1.07994 * 119.92190 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8831 1.0312 0.0000 4 6 2.0235 -0.6924 -1.2683 5 6 1.8067 -2.1812 -1.1483 6 16 1.4558 -3.2912 -2.3901 7 6 1.4480 -4.6165 -1.2316 8 6 1.2131 -5.9598 -1.5429 9 1 1.1232 -6.2674 -2.5743 10 6 1.0942 -6.9067 -0.5162 11 7 0.7719 -8.1415 -0.7999 12 14 1.3964 -6.4043 1.2574 13 1 1.2092 -7.5808 2.1439 14 1 2.7842 -5.8950 1.3980 15 1 0.4366 -5.3378 1.6401 16 7 1.6914 -4.1475 -0.0274 17 6 1.8871 -2.8540 0.0660 18 6 2.1499 -2.0695 1.3093 19 6 2.5203 -2.6992 2.4895 20 6 2.7835 -1.9370 3.6120 21 6 2.6803 -0.5585 3.5481 22 6 2.3009 0.0672 2.3749 23 6 2.0177 -0.6825 1.2478 24 1 -0.3634 0.5342 0.8779 25 1 -0.3634 0.4932 -0.9017 26 1 -0.3633 -1.0274 0.0237 27 1 3.0860 -0.4898 -1.4026 28 1 1.4704 -0.3131 -2.1276 29 1 0.5510 -8.3878 -1.7117 30 1 2.6010 -3.7754 2.5306 31 1 3.0693 -2.4160 4.5368 32 1 2.8981 0.0348 4.4237 33 1 2.2248 1.1439 2.3388 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137017568.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:10 Heat of formation + Delta-G solvation = 23.572404 kcal Electronic energy + Delta-G solvation = -18135.659074 eV Core-core repulsion = 15443.750215 eV Total energy + Delta-G solvation = -2691.908859 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.78231 -37.47088 -35.50549 -33.94300 -31.21239 -29.76234 -29.27585 -27.65930 -24.77687 -22.97626 -22.64525 -21.44119 -20.38867 -18.71198 -17.02755 -16.90299 -15.84776 -15.05501 -14.62722 -14.41663 -13.88069 -13.60652 -13.30997 -13.11189 -13.03321 -12.72348 -12.46982 -11.98050 -11.84296 -11.77793 -11.12627 -11.00992 -10.89996 -10.65613 -10.37314 -10.17092 -9.97773 -9.72548 -9.48187 -8.80107 -8.41246 -8.09975 -7.95326 -7.53116 -7.27026 -4.90507 1.38775 1.72075 2.33344 2.84809 3.31665 3.44852 3.50189 3.87030 3.90024 4.26250 4.44357 4.92918 4.94492 5.09554 5.13098 5.33980 5.41611 5.50871 5.63507 5.71344 5.86326 5.95036 6.11827 6.17868 6.20558 6.25990 6.43416 6.47128 6.56053 6.66007 6.74850 6.83408 7.09160 7.11490 7.21913 7.35513 7.62801 7.87574 8.21384 9.28067 9.69823 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.008560 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.439101 B = 3270.399133 C = 4436.132553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 H 0.074 0.926 4 C -0.002 4.002 5 C -0.381 4.381 6 S -0.021 6.021 7 C 0.215 3.785 8 C -0.423 4.423 9 H 0.093 0.907 10 C 0.056 3.944 11 N -0.780 5.780 12 Si 1.128 2.872 13 H -0.319 1.319 14 H -0.276 1.276 15 H -0.272 1.272 16 N -0.597 5.597 17 C 0.167 3.833 18 C 0.005 3.995 19 C -0.096 4.096 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.063 4.063 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.289 0.711 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 11.711 4.018 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.061 4.061 3 H 0.092 0.908 4 C -0.041 4.041 5 C -0.506 4.506 6 S 0.241 5.759 7 C -0.034 4.034 8 C -0.467 4.467 9 H 0.112 0.888 10 C -0.171 4.171 11 N -0.402 5.402 12 Si 0.959 3.041 13 H -0.250 1.250 14 H -0.203 1.203 15 H -0.199 1.199 16 N -0.321 5.321 17 C 0.029 3.971 18 C 0.003 3.997 19 C -0.115 4.115 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.141 4.141 23 C -0.064 4.064 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.146 0.854 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.270 10.802 4.641 11.825 hybrid contribution 0.129 0.888 -1.069 1.396 sum 1.399 11.690 3.572 12.303 Atomic orbital electron populations 1.21791 0.94271 1.02634 1.00754 1.19868 0.96192 0.97933 0.92151 0.90786 1.19473 0.99479 0.89369 0.95808 1.24511 1.30354 0.99532 0.96164 1.82821 1.75184 1.02036 1.15828 1.23793 0.95444 0.96560 0.87598 1.20223 1.39309 0.89889 0.97305 0.88849 1.27799 0.89543 0.91177 1.08561 1.70633 1.26375 1.18044 1.25162 0.82366 0.79946 0.72087 0.69689 1.25046 1.20305 1.19865 1.65559 1.33705 1.11447 1.21374 1.19208 0.98649 0.88045 0.91235 1.18270 0.98404 0.91478 0.91588 1.21238 0.97894 1.00530 0.91824 1.21110 1.01389 0.93900 0.98189 1.21012 1.01363 0.94681 0.97611 1.20897 1.01495 0.99154 0.92583 1.19812 0.98801 0.92459 0.95342 0.93203 0.92675 0.92006 0.92806 0.92042 0.89893 0.85377 0.86198 0.86634 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.92 37.15 0.33 -1.75 16 2 C -0.04 -0.66 2.79 -92.10 -0.26 -0.91 16 3 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 4 C 0.00 -0.03 5.70 -27.93 -0.16 -0.19 16 5 C -0.38 -8.34 5.70 -33.89 -0.19 -8.53 16 6 S -0.02 -0.47 23.11 -107.50 -2.48 -2.96 16 7 C 0.22 5.52 6.85 -17.08 -0.12 5.41 16 8 C -0.42 -10.96 9.82 -38.24 -0.38 -11.33 16 9 H 0.09 2.36 8.06 -52.48 -0.42 1.94 16 10 C 0.06 1.45 5.52 -17.29 -0.10 1.36 16 11 N -0.78 -19.94 13.65 55.56 0.76 -19.18 16 12 Si 1.13 27.15 25.06 -169.99 -4.26 22.89 16 13 H -0.32 -7.46 7.11 56.52 0.40 -7.06 16 14 H -0.28 -6.68 7.09 56.52 0.40 -6.28 16 15 H -0.27 -6.72 6.93 56.52 0.39 -6.33 16 16 N -0.60 -15.38 5.62 -8.74 -0.05 -15.43 16 17 C 0.17 3.93 6.79 -83.23 -0.57 3.37 16 18 C 0.01 0.11 5.86 -104.61 -0.61 -0.51 16 19 C -0.10 -1.84 9.78 -39.38 -0.39 -2.23 16 20 C -0.13 -1.97 10.06 -39.54 -0.40 -2.37 16 21 C -0.13 -1.78 10.01 -39.52 -0.40 -2.17 16 22 C -0.12 -1.79 9.65 -39.55 -0.38 -2.17 16 23 C -0.06 -1.09 4.91 -104.31 -0.51 -1.60 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 26 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.00 8.02 -51.93 -0.42 0.58 16 29 H 0.29 6.97 8.72 -40.82 -0.36 6.61 16 30 H 0.13 2.60 7.37 -52.49 -0.39 2.21 16 31 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.37 8.04 -52.49 -0.42 0.95 16 LS Contribution 287.37 15.07 4.33 4.33 Total: -1.00 -27.56 287.37 -9.56 -37.12 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.74 Total: -3.13 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -4.12 Total: -23.64 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.71 Total: -34.61 kcal Atomic # 14 Polarization: 27.15 SS G_CDS: -4.26 Total: 22.89 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -2.48 Total: -2.96 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.56 -9.56 -37.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137017568.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.693 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds