Wall clock time and date at job start Mon Mar 30 2020 07:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 108.90582 * 2 1 4 4 C 1.52697 * 108.85647 * 241.36810 * 2 1 3 5 5 C 1.50927 * 109.56252 * 286.40324 * 4 2 1 6 6 S 1.70215 * 127.94058 * 147.85112 * 5 4 2 7 7 C 1.76024 * 90.67333 * 178.86919 * 6 5 4 8 8 C 1.39871 * 125.26303 * 180.21126 * 7 6 5 9 9 H 1.08007 * 119.99973 * 6.65038 * 8 7 6 10 10 C 1.40179 * 120.00045 * 186.65427 * 8 7 6 11 11 N 1.30733 * 120.00039 * 174.68273 * 10 8 7 12 12 Si 1.86793 * 119.99860 * 354.67865 * 10 8 7 13 13 H 1.48496 * 109.47153 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47346 * 299.99895 * 12 10 8 15 15 H 1.48493 * 109.47273 * 60.00280 * 12 10 8 16 16 N 1.31502 * 109.47278 * 0.48115 * 7 6 5 17 17 C 1.31158 * 116.39544 * 359.73198 * 16 7 6 18 18 C 1.49342 * 127.13185 * 178.55106 * 17 16 7 19 19 C 1.38799 * 121.09767 * 15.18892 * 18 17 16 20 20 C 1.38209 * 119.41723 * 178.59746 * 19 18 17 21 21 C 1.38384 * 119.84451 * 359.77606 * 20 19 18 22 22 C 1.38271 * 120.69319 * 0.74793 * 21 20 19 23 23 C 1.38296 * 120.15642 * 0.07510 * 22 21 20 24 24 H 1.08999 * 109.47312 * 301.32366 * 1 2 3 25 25 H 1.09007 * 109.47391 * 61.32329 * 1 2 3 26 26 H 1.08995 * 109.46871 * 181.31895 * 1 2 3 27 27 H 1.08998 * 109.45856 * 166.37006 * 4 2 1 28 28 H 1.09002 * 109.45139 * 46.42940 * 4 2 1 29 29 H 0.96996 * 119.99691 * 355.47289 * 11 10 8 30 30 H 1.07999 * 120.28947 * 358.52891 * 19 18 17 31 31 H 1.07996 * 120.08499 * 179.80095 * 20 19 18 32 32 H 1.07992 * 119.65577 * 180.72894 * 21 20 19 33 33 H 1.07994 * 119.92190 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8831 1.0312 0.0000 4 6 2.0235 -0.6924 -1.2683 5 6 1.8067 -2.1812 -1.1483 6 16 1.4558 -3.2912 -2.3901 7 6 1.4480 -4.6165 -1.2316 8 6 1.2131 -5.9598 -1.5429 9 1 1.1232 -6.2674 -2.5743 10 6 1.0942 -6.9067 -0.5162 11 7 0.7719 -8.1415 -0.7999 12 14 1.3964 -6.4043 1.2574 13 1 1.2092 -7.5808 2.1439 14 1 2.7842 -5.8950 1.3980 15 1 0.4366 -5.3378 1.6401 16 7 1.6914 -4.1475 -0.0274 17 6 1.8871 -2.8540 0.0660 18 6 2.1499 -2.0695 1.3093 19 6 2.5203 -2.6992 2.4895 20 6 2.7835 -1.9370 3.6120 21 6 2.6803 -0.5585 3.5481 22 6 2.3009 0.0672 2.3749 23 6 2.0177 -0.6825 1.2478 24 1 -0.3634 0.5342 0.8779 25 1 -0.3634 0.4932 -0.9017 26 1 -0.3633 -1.0274 0.0237 27 1 3.0860 -0.4898 -1.4026 28 1 1.4704 -0.3131 -2.1276 29 1 0.5510 -8.3878 -1.7117 30 1 2.6010 -3.7754 2.5306 31 1 3.0693 -2.4160 4.5368 32 1 2.8981 0.0348 4.4237 33 1 2.2248 1.1439 2.3388 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137017568.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:09 Heat of formation + Delta-G solvation = 9.544873 kcal Electronic energy + Delta-G solvation = -18136.267353 eV Core-core repulsion = 15443.750215 eV Total energy + Delta-G solvation = -2692.517138 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.20004 -39.13638 -36.87233 -35.80010 -32.70967 -31.07039 -30.75096 -29.27922 -26.29722 -24.59833 -23.91204 -23.04617 -21.98174 -20.34941 -18.64311 -18.61910 -17.27686 -16.43208 -16.10185 -16.02036 -15.57962 -15.13137 -14.86200 -14.58668 -14.52495 -14.23664 -14.15641 -13.34544 -13.28409 -13.07396 -12.81131 -12.51279 -12.24156 -12.15192 -12.09760 -11.88416 -11.56570 -11.44534 -11.25319 -10.32096 -9.95582 -9.87448 -9.64429 -9.46101 -8.93503 -6.81936 -0.08547 0.47764 0.61929 0.96399 1.46895 1.52311 1.57543 1.90256 2.19981 2.33950 2.81995 3.13083 3.55659 3.74418 3.89535 4.14988 4.22818 4.28209 4.41686 4.49413 4.60681 4.67279 4.72339 4.81387 4.98920 4.99971 5.09708 5.15427 5.20527 5.24588 5.29020 5.38983 5.59596 5.60672 5.67104 5.83048 5.99146 6.13844 6.28980 7.42834 7.75170 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.008560 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.439101 B = 3270.399133 C = 4436.132553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.040 4.040 3 H 0.118 0.882 4 C -0.006 4.006 5 C -0.370 4.370 6 S 0.003 5.997 7 C 0.189 3.811 8 C -0.453 4.453 9 H 0.088 0.912 10 C 0.037 3.963 11 N -0.798 5.798 12 Si 1.162 2.838 13 H -0.309 1.309 14 H -0.287 1.287 15 H -0.289 1.289 16 N -0.615 5.615 17 C 0.131 3.869 18 C -0.037 4.037 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.072 4.072 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.292 0.708 30 H 0.099 0.901 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 16.006 5.443 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.059 4.059 3 H 0.136 0.864 4 C -0.045 4.045 5 C -0.494 4.494 6 S 0.265 5.735 7 C -0.063 4.063 8 C -0.498 4.498 9 H 0.106 0.894 10 C -0.187 4.187 11 N -0.421 5.421 12 Si 0.993 3.007 13 H -0.240 1.240 14 H -0.215 1.215 15 H -0.217 1.217 16 N -0.340 5.340 17 C -0.005 4.005 18 C -0.039 4.039 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.073 4.073 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.164 0.836 32 H 0.178 0.822 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.801 15.104 6.073 16.379 hybrid contribution 0.010 -0.175 -1.482 1.492 sum 1.811 14.929 4.592 15.724 Atomic orbital electron populations 1.21760 0.94096 1.00381 1.02743 1.19968 0.96245 0.99550 0.90163 0.86406 1.19714 1.00546 0.86273 0.98015 1.25265 1.27232 1.01810 0.95128 1.82612 1.74352 1.01167 1.15333 1.24030 0.95986 0.97463 0.88797 1.20167 1.41988 0.90530 0.97099 0.89386 1.28149 0.89558 0.91391 1.09602 1.70616 1.27945 1.18055 1.25475 0.81873 0.78664 0.71369 0.68806 1.23994 1.21482 1.21732 1.65539 1.33523 1.13203 1.21710 1.19855 0.99404 0.87637 0.93608 1.18468 1.01550 0.93039 0.90843 1.21219 1.00201 0.99694 0.93403 1.21422 1.00364 0.94932 0.97704 1.21541 0.98580 0.94004 0.98967 1.21377 0.99302 1.01052 0.91365 1.20095 0.98805 0.91112 0.97272 0.91148 0.90811 0.96290 0.91805 0.90315 0.89605 0.88299 0.83626 0.82222 0.82174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 8.92 71.98 0.64 -2.95 16 2 C -0.04 -1.09 2.79 -11.75 -0.03 -1.12 16 3 H 0.12 2.27 8.02 -2.39 -0.02 2.25 16 4 C -0.01 -0.19 5.70 29.82 0.17 -0.02 16 5 C -0.37 -16.06 5.70 25.95 0.15 -15.91 16 6 S 0.00 0.15 23.11 -56.49 -1.31 -1.16 16 7 C 0.19 10.11 6.85 85.14 0.58 10.70 16 8 C -0.45 -24.73 9.82 23.14 0.23 -24.50 16 9 H 0.09 4.72 8.06 -2.91 -0.02 4.70 16 10 C 0.04 2.02 5.52 85.33 0.47 2.49 16 11 N -0.80 -42.34 13.65 21.87 0.30 -42.04 16 12 Si 1.16 58.33 25.06 68.60 1.72 60.05 16 13 H -0.31 -14.68 7.11 99.48 0.71 -13.98 16 14 H -0.29 -14.69 7.09 99.48 0.71 -13.99 16 15 H -0.29 -15.14 6.93 99.48 0.69 -14.45 16 16 N -0.62 -33.07 5.62 -181.57 -1.02 -34.09 16 17 C 0.13 6.29 6.79 42.43 0.29 6.58 16 18 C -0.04 -1.50 5.86 -19.86 -0.12 -1.62 16 19 C -0.13 -4.88 9.78 22.40 0.22 -4.66 16 20 C -0.13 -3.57 10.06 22.30 0.22 -3.35 16 21 C -0.11 -2.54 10.01 22.31 0.22 -2.31 16 22 C -0.11 -2.66 9.65 22.29 0.22 -2.45 16 23 C -0.07 -2.26 4.91 -19.66 -0.10 -2.35 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.69 8.09 -2.38 -0.02 1.67 16 26 H 0.02 0.65 7.72 -2.39 -0.02 0.63 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 2.28 8.02 -2.39 -0.02 2.26 16 29 H 0.29 14.70 8.72 -92.71 -0.81 13.89 16 30 H 0.10 4.27 7.37 -2.91 -0.02 4.25 16 31 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.16 2.45 8.04 -2.91 -0.02 2.43 16 Total: -1.00 -63.99 287.37 3.92 -60.07 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: 1.06 Total: -1.33 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 3.17 Total: -41.50 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -0.72 Total: -76.13 kcal Atomic # 14 Polarization: 58.33 SS G_CDS: 1.72 Total: 60.05 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.31 Total: -1.16 kcal Total: -63.99 3.92 -60.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137017568.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.612 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds