Wall clock time and date at job start Mon Mar 30 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86810 * 119.99967 * 2 1 4 4 H 1.48504 * 109.46870 * 274.65383 * 3 2 1 5 5 H 1.48501 * 109.46827 * 34.65096 * 3 2 1 6 6 H 1.48497 * 109.46864 * 154.65338 * 3 2 1 7 7 C 1.39865 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00267 * 162.12816 * 7 2 1 9 9 C 1.41138 * 119.99771 * 342.12506 * 7 2 1 10 10 C 1.40887 * 120.15542 * 155.08932 * 9 7 2 11 11 C 1.36344 * 119.83460 * 180.27715 * 10 9 7 12 12 C 1.39570 * 120.15817 * 359.51480 * 11 10 9 13 13 N 1.38855 * 119.83568 * 180.23651 * 12 11 10 14 14 C 1.46493 * 120.00488 * 0.22351 * 13 12 11 15 15 C 1.50700 * 109.47684 * 180.02562 * 14 13 12 16 16 Cl 1.73601 * 119.99538 * 295.00329 * 15 14 13 17 17 C 1.31290 * 120.00391 * 115.00053 * 15 14 13 18 18 Cl 1.73604 * 119.99925 * 180.02562 * 17 15 14 19 19 C 1.39564 * 120.31915 * 0.46545 * 12 11 10 20 20 C 1.36341 * 120.15774 * 359.79163 * 19 12 11 21 21 H 0.97004 * 119.99917 * 359.97438 * 1 2 3 22 22 H 1.07993 * 120.07990 * 359.97438 * 10 9 7 23 23 H 1.07997 * 119.91650 * 179.72109 * 11 10 9 24 24 H 0.97007 * 119.99997 * 180.22639 * 13 12 11 25 25 H 1.09001 * 109.47241 * 300.00311 * 14 13 12 26 26 H 1.08999 * 109.47290 * 59.99885 * 14 13 12 27 27 H 1.07996 * 119.99755 * 359.97438 * 17 15 14 28 28 H 1.07994 * 119.92030 * 179.77594 * 19 12 11 29 29 H 1.08002 * 120.07819 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3921 2.1033 -1.3955 5 1 1.4930 2.6223 0.7961 6 1 3.5863 1.4138 0.5994 7 6 2.0084 -1.2112 -0.0005 8 1 3.0493 -1.2337 -0.2876 9 6 1.3538 -2.4042 0.3741 10 6 1.8229 -3.6466 -0.0962 11 6 1.1822 -4.7946 0.2653 12 6 0.0703 -4.7416 1.1072 13 7 -0.5742 -5.9153 1.4750 14 6 -0.0839 -7.2053 0.9836 15 6 -0.9522 -8.3119 1.5243 16 17 -0.9946 -8.6265 3.2311 17 6 -1.6766 -9.0380 0.7048 18 17 -2.6774 -10.3124 1.3279 19 6 -0.3997 -3.5145 1.5773 20 6 0.2279 -2.3581 1.2198 21 1 -0.4850 0.8401 0.0004 22 1 2.6849 -3.6892 -0.7454 23 1 1.5379 -5.7473 -0.0981 24 1 -1.3492 -5.8810 2.0574 25 1 -0.1187 -7.2161 -0.1058 26 1 0.9435 -7.3539 1.3157 27 1 -1.6506 -8.8420 -0.3569 28 1 -1.2628 -3.4807 2.2255 29 1 -0.1371 -1.4092 1.5840 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211272992.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:23 Heat of formation + Delta-G solvation = 7.102464 kcal Electronic energy + Delta-G solvation = -15257.261105 eV Core-core repulsion = 12424.328406 eV Total energy + Delta-G solvation = -2832.932700 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.84141 -38.43371 -37.43612 -36.81405 -35.11515 -33.39494 -31.40379 -30.34925 -27.44929 -25.55114 -22.95749 -22.03097 -21.27076 -19.11090 -17.92289 -17.54047 -16.97283 -16.37613 -15.77119 -15.50521 -14.81810 -14.43704 -14.37221 -14.01688 -13.82146 -13.54218 -13.27124 -13.00281 -12.72631 -12.66786 -12.55097 -12.24857 -11.99870 -11.77926 -11.56861 -11.19278 -11.07415 -10.34343 -10.04661 -9.37940 -8.54585 -8.18144 -6.00024 0.40522 0.86889 1.11555 1.20902 1.32194 1.41585 1.53765 1.60331 2.28475 2.85699 2.95279 3.65166 3.86637 4.24881 4.45299 4.48509 4.50200 4.62912 4.82929 5.02654 5.18957 5.32480 5.42068 5.74224 5.75738 5.92844 6.20549 6.41979 6.66231 6.86528 7.07550 7.10157 7.26613 8.49073 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.054244 B = 0.003275 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.066499 B = 8548.269965 C = 8582.270293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.031 3.969 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.068 0.932 9 C 0.035 3.965 10 C -0.197 4.197 11 C -0.162 4.162 12 C 0.114 3.886 13 N -0.750 5.750 14 C 0.181 3.819 15 C -0.086 4.086 16 Cl -0.069 7.069 17 C -0.069 4.069 18 Cl -0.073 7.073 19 C -0.172 4.172 20 C -0.143 4.143 21 H 0.282 0.718 22 H 0.097 0.903 23 H 0.122 0.878 24 H 0.395 0.605 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.197 0.803 28 H 0.104 0.896 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 -15.816 1.824 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.181 4.181 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.033 3.967 10 C -0.217 4.217 11 C -0.184 4.184 12 C 0.015 3.985 13 N -0.386 5.386 14 C 0.057 3.943 15 C -0.114 4.114 16 Cl -0.040 7.040 17 C -0.116 4.116 18 Cl -0.044 7.044 19 C -0.194 4.194 20 C -0.163 4.163 21 H 0.092 0.908 22 H 0.115 0.885 23 H 0.140 0.860 24 H 0.229 0.771 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.214 0.786 28 H 0.122 0.878 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.938 -15.936 1.912 16.526 hybrid contribution -0.092 0.864 0.378 0.947 sum -4.030 -15.072 2.290 15.769 Atomic orbital electron populations 1.69916 1.08720 1.29760 1.38534 1.26607 0.95456 1.04097 0.91910 0.85310 0.79185 0.76765 0.79089 1.19027 1.19419 1.18542 1.19591 0.97990 0.92745 1.43248 0.91388 1.17844 0.93515 0.93174 0.92201 1.20771 1.03128 0.92898 1.04925 1.20135 0.97688 0.97730 1.02844 1.17333 0.95309 0.85692 1.00186 1.43806 1.35211 1.01676 1.57890 1.20158 0.95846 0.79534 0.98799 1.23581 1.02123 1.00122 0.85559 1.98401 1.97483 1.94569 1.13586 1.25040 0.93982 0.91489 1.01041 1.98398 1.67815 1.50360 1.87812 1.20215 1.02057 0.91873 1.05238 1.20842 0.98947 0.96651 0.99890 0.90787 0.88453 0.85994 0.77109 0.89325 0.90880 0.78623 0.87753 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.61 10.98 21.82 0.24 -45.37 15 2 C 0.03 1.63 5.13 85.23 0.44 2.07 15 3 Si 0.97 39.82 29.60 68.60 2.03 41.85 15 4 H -0.27 -10.41 7.11 99.48 0.71 -9.71 15 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 7 C -0.50 -28.03 9.03 23.38 0.21 -27.82 15 8 H 0.07 3.66 7.91 -2.91 -0.02 3.64 15 9 C 0.04 1.94 5.57 -21.27 -0.12 1.82 15 10 C -0.20 -9.53 9.74 22.48 0.22 -9.31 15 11 C -0.16 -6.66 9.23 22.15 0.20 -6.46 15 12 C 0.11 4.55 6.67 38.67 0.26 4.80 15 13 N -0.75 -22.71 5.69 -342.72 -1.95 -24.66 15 14 C 0.18 4.15 5.20 85.63 0.45 4.59 15 15 C -0.09 -1.68 5.87 25.36 0.15 -1.53 15 16 Cl -0.07 -1.51 27.81 -2.72 -0.08 -1.58 15 17 C -0.07 -1.11 10.43 67.50 0.70 -0.41 15 18 Cl -0.07 -1.27 27.92 -2.72 -0.08 -1.34 15 19 C -0.17 -7.82 9.82 22.15 0.22 -7.60 15 20 C -0.14 -7.60 8.63 22.48 0.19 -7.41 15 21 H 0.28 13.92 8.30 -92.71 -0.77 13.15 15 22 H 0.10 4.46 8.06 -2.91 -0.02 4.43 15 23 H 0.12 4.11 6.68 -2.91 -0.02 4.09 15 24 H 0.39 11.30 8.46 -92.70 -0.78 10.51 15 25 H 0.09 1.80 7.57 -2.39 -0.02 1.78 15 26 H 0.07 1.71 7.94 -2.39 -0.02 1.69 15 27 H 0.20 2.11 7.85 -2.91 -0.02 2.09 15 28 H 0.10 4.27 8.06 -2.91 -0.02 4.25 15 29 H 0.10 5.51 6.18 -2.91 -0.02 5.49 15 Total: -1.00 -60.02 285.64 3.49 -56.53 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.40 Total: 21.81 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 2.92 Total: -47.24 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -1.71 Total: -70.03 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -0.15 Total: -2.92 kcal Total: -60.02 3.49 -56.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211272992.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.636 kcal (2) G-P(sol) polarization free energy of solvation -60.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds