Wall clock time and date at job start Mon Mar 30 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 120.00033 * 2 1 4 4 H 1.48498 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99607 * 3 2 1 6 6 H 1.48504 * 109.47204 * 59.99319 * 3 2 1 7 7 C 1.38951 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99800 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00161 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.46912 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 10 15 15 C 1.38211 * 119.99036 * 264.72643 * 14 13 12 16 16 C 1.38438 * 119.98466 * 179.79088 * 15 14 13 17 17 F 1.35096 * 120.01218 * 180.25378 * 16 15 14 18 18 C 1.38481 * 119.97560 * 0.48375 * 16 15 14 19 19 C 1.38166 * 119.98596 * 359.74981 * 18 16 15 20 20 C 1.38331 * 119.99702 * 85.00070 * 14 13 12 21 21 Cl 1.73603 * 119.98348 * 0.02562 * 20 14 13 22 22 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 23 23 H 0.97005 * 120.00430 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.46980 * 59.99654 * 12 10 9 25 25 H 1.08992 * 109.47158 * 299.99760 * 12 10 9 26 26 H 1.09002 * 109.47398 * 300.00078 * 13 12 10 27 27 H 1.09001 * 109.47194 * 60.00258 * 13 12 10 28 28 H 1.07997 * 120.00935 * 0.02562 * 15 14 13 29 29 H 1.07996 * 120.01164 * 179.72490 * 18 16 15 30 30 H 1.08002 * 119.99524 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 6 2.2381 -6.0258 0.0004 14 6 1.4846 -7.3309 0.0016 15 6 1.2358 -7.9839 1.1940 16 6 0.5398 -9.1806 1.1954 17 9 0.2918 -9.8167 2.3612 18 6 0.1020 -9.7278 0.0010 19 6 0.3556 -9.0766 -1.1909 20 6 1.0470 -7.8780 -1.1912 21 17 1.3668 -7.0611 -2.6893 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3906 0.0005 24 1 0.6168 -4.9208 -0.8886 25 1 0.6176 -4.9205 0.8913 26 1 2.8641 -5.9681 -0.8901 27 1 2.8654 -5.9681 0.8899 28 1 1.5809 -7.5588 2.1249 29 1 -0.4371 -10.6636 0.0010 30 1 0.0139 -9.5030 -2.1225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259570958.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:47 Heat of formation + Delta-G solvation = -99.812213 kcal Electronic energy + Delta-G solvation = -17489.897208 eV Core-core repulsion = 14223.991965 eV Total energy + Delta-G solvation = -3265.905243 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.95926 -40.65208 -39.88665 -37.38997 -36.11613 -34.92404 -33.27377 -31.56620 -30.65483 -27.38441 -25.35908 -23.87197 -22.43466 -20.92733 -19.86477 -18.45954 -17.83029 -17.63610 -17.47317 -16.70081 -16.53974 -16.15962 -15.83343 -15.22372 -14.83804 -14.68759 -14.33822 -13.98322 -13.82341 -13.52728 -13.24051 -13.03261 -12.92080 -12.44612 -12.40582 -12.25366 -12.10161 -11.90536 -11.67120 -11.52870 -10.42999 -10.04355 -10.02813 -9.56080 -8.47526 -5.96685 -0.09929 0.07457 1.13544 1.36311 1.41786 1.56146 2.03718 2.28750 2.37031 3.05327 3.19919 3.25439 3.63127 3.69167 4.04907 4.08184 4.15496 4.27070 4.39879 4.63979 4.75807 4.81024 4.82209 5.00926 5.04620 5.20919 5.31968 5.41022 5.69457 5.98970 6.57307 7.10856 7.54521 8.09110 8.70139 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.028437 B = 0.003993 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.395931 B = 7010.239008 C = 7482.364151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.634 6.634 12 C -0.110 4.110 13 C -0.059 4.059 14 C -0.047 4.047 15 C -0.144 4.144 16 C 0.097 3.903 17 F -0.140 7.140 18 C -0.137 4.137 19 C -0.073 4.073 20 C -0.056 4.056 21 Cl -0.066 7.066 22 H 0.278 0.722 23 H 0.397 0.603 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.150 0.850 29 H 0.173 0.827 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 -19.056 -1.286 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.209 5.209 10 C 0.227 3.773 11 O -0.522 6.522 12 C -0.150 4.150 13 C -0.097 4.097 14 C -0.048 4.048 15 C -0.163 4.163 16 C 0.077 3.923 17 F -0.119 7.119 18 C -0.156 4.156 19 C -0.091 4.091 20 C -0.083 4.083 21 Cl -0.037 7.037 22 H 0.087 0.913 23 H 0.230 0.770 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.168 0.832 29 H 0.191 0.809 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.045 -18.840 -1.375 19.134 hybrid contribution -0.065 1.035 0.137 1.046 sum -3.110 -17.805 -1.238 18.117 Atomic orbital electron populations 1.69683 1.06887 1.29286 1.50258 1.26058 0.96527 1.02459 0.96163 0.84871 0.78060 0.77041 0.78365 1.19727 1.19580 1.19527 1.19742 0.92765 0.84074 1.49951 0.90211 1.42001 1.09385 1.04861 1.64645 1.20885 0.88102 0.86272 0.81991 1.90484 1.15951 1.88249 1.57478 1.21364 0.98531 0.90397 1.04711 1.20229 0.96408 0.88741 1.04280 1.19542 0.97538 0.96236 0.91460 1.21122 1.01069 0.94978 0.99103 1.17853 0.99888 0.92453 0.82079 1.91510 1.92425 1.81204 1.46716 1.21374 1.02087 1.02498 0.89620 1.21174 0.95955 0.92015 0.99973 1.21075 1.03803 0.96372 0.87053 1.98398 1.94327 1.79027 1.31950 0.91261 0.76956 0.88898 0.88201 0.90726 0.90413 0.83216 0.80948 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.34 -19.25 9.68 84.04 0.81 -18.43 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.57 -29.83 5.29 -306.99 -1.62 -31.45 16 10 C 0.44 21.04 7.78 87.66 0.68 21.72 16 11 O -0.63 -35.05 15.56 -3.07 -0.05 -35.10 16 12 C -0.11 -3.79 5.68 29.85 0.17 -3.62 16 13 C -0.06 -1.82 4.14 29.85 0.12 -1.70 16 14 C -0.05 -1.16 5.14 -19.85 -0.10 -1.26 16 15 C -0.14 -3.16 9.66 22.31 0.22 -2.94 16 16 C 0.10 1.89 7.30 22.38 0.16 2.05 16 17 F -0.14 -2.89 17.27 44.97 0.78 -2.11 16 18 C -0.14 -2.08 10.03 22.31 0.22 -1.86 16 19 C -0.07 -1.18 9.83 22.28 0.22 -0.96 16 20 C -0.06 -1.26 6.31 22.32 0.14 -1.11 16 21 Cl -0.07 -1.63 27.15 -2.72 -0.07 -1.71 16 22 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 23 H 0.40 19.68 7.90 -92.70 -0.73 18.95 16 24 H 0.09 2.99 7.90 -2.39 -0.02 2.97 16 25 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 26 H 0.07 2.54 7.08 -2.39 -0.02 2.52 16 27 H 0.08 2.49 8.01 -2.39 -0.02 2.47 16 28 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -66.04 288.91 4.91 -61.13 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.45 Total: 22.19 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 3.12 Total: -8.31 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.34 Total: -81.18 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.05 Total: -35.10 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.71 kcal Total: -66.04 4.91 -61.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259570958.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.684 kcal (2) G-P(sol) polarization free energy of solvation -66.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds