Wall clock time and date at job start Mon Mar 30 2020 07:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.27767 * 57.91036 * 9 7 2 11 11 C 1.54599 * 110.30739 * 295.71425 * 9 7 2 12 12 C 1.54936 * 102.92020 * 219.12954 * 11 9 7 13 13 N 1.48531 * 103.22830 * 37.41634 * 12 11 9 14 14 C 1.46904 * 111.00046 * 200.27790 * 13 12 11 15 15 C 1.50697 * 109.47023 * 287.39473 * 14 13 12 16 16 S 1.75874 * 125.20007 * 269.69170 * 15 14 13 17 17 C 1.75889 * 90.97944 * 179.97438 * 16 15 14 18 18 C 1.33398 * 109.60691 * 0.34992 * 17 16 15 19 19 C 1.33438 * 125.19935 * 90.00281 * 15 14 13 20 20 Cl 1.73600 * 122.54854 * 0.02562 * 19 15 14 21 21 C 1.47900 * 105.81910 * 320.79115 * 13 12 11 22 22 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.72311 * 337.48770 * 11 9 7 24 24 H 1.08995 * 110.72264 * 100.77265 * 11 9 7 25 25 H 1.09005 * 110.66576 * 278.98056 * 12 11 9 26 26 H 1.09006 * 110.66569 * 155.84761 * 12 11 9 27 27 H 1.09003 * 109.46662 * 47.40097 * 14 13 12 28 28 H 1.09002 * 109.47094 * 167.39423 * 14 13 12 29 29 H 1.08004 * 125.19443 * 180.02562 * 17 16 15 30 30 H 1.07999 * 122.54371 * 179.76056 * 18 17 16 31 31 H 1.09001 * 109.91971 * 265.98062 * 21 13 12 32 32 H 1.09004 * 109.91694 * 144.68568 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8890 -0.6506 0.8673 11 6 4.0486 -0.5652 -1.3051 12 6 5.2677 -1.4592 -1.6444 13 7 4.8134 -2.8173 -1.2501 14 6 5.9572 -3.7155 -1.0425 15 6 6.5663 -4.0692 -2.3748 16 16 6.1069 -5.4478 -3.3656 17 6 7.2924 -5.0037 -4.5866 18 6 7.9422 -3.9044 -4.2007 19 6 7.5407 -3.3877 -2.9803 20 17 8.2531 -1.9635 -2.2891 21 6 4.0461 -2.6382 0.0016 22 1 -0.4850 0.8400 -0.0004 23 1 3.2995 -0.6183 -2.0952 24 1 4.3611 0.4654 -1.1370 25 1 6.1384 -1.1602 -1.0606 26 1 5.4872 -1.4217 -2.7115 27 1 6.7027 -3.2171 -0.4229 28 1 5.6197 -4.6244 -0.5445 29 1 7.4710 -5.5420 -5.5057 30 1 8.7212 -3.4510 -4.7956 31 1 4.6975 -2.7927 0.8618 32 1 3.2143 -3.3420 0.0312 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259645909.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:00 Heat of formation + Delta-G solvation = 16.801992 kcal Electronic energy + Delta-G solvation = -16467.058791 eV Core-core repulsion = 13772.423495 eV Total energy + Delta-G solvation = -2694.635296 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.049 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18690 -38.86988 -36.97956 -35.26364 -33.51920 -30.62189 -30.11345 -27.11064 -25.64365 -23.96393 -22.05274 -21.20372 -20.37054 -19.00039 -18.26288 -17.09926 -16.96271 -16.26050 -15.78535 -15.21321 -14.85893 -14.59965 -14.36101 -14.17824 -13.90157 -13.72901 -13.28113 -12.93545 -12.64298 -12.48640 -12.31861 -12.14708 -12.00596 -11.83905 -11.68962 -11.65012 -11.37316 -11.01226 -10.72507 -9.74074 -9.36933 -9.23966 -8.27280 -6.29690 -0.10958 0.35853 0.90098 1.33659 1.35188 1.45049 1.53105 1.63284 2.34944 3.05692 3.16303 3.67917 3.95381 3.98694 4.19220 4.31139 4.36804 4.43859 4.53218 4.63215 4.73276 4.85354 4.88294 4.99274 5.09126 5.16538 5.23725 5.34306 5.44375 5.70465 6.02788 6.12163 6.34236 6.75467 7.34298 8.89634 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.005419 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.929097 B = 5165.541557 C = 5697.547303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.245 1.245 6 H -0.293 1.293 7 C -0.506 4.506 8 H 0.034 0.966 9 C 0.000 4.000 10 H 0.033 0.967 11 C -0.130 4.130 12 C 0.054 3.946 13 N -0.520 5.520 14 C 0.112 3.888 15 C -0.178 4.178 16 S 0.161 5.839 17 C -0.197 4.197 18 C -0.141 4.141 19 C -0.058 4.058 20 Cl -0.058 7.058 21 C 0.063 3.937 22 H 0.264 0.736 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.203 0.797 30 H 0.166 0.834 31 H 0.049 0.951 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.065 -8.892 -8.024 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.184 4.184 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.169 1.169 6 H -0.220 1.220 7 C -0.544 4.544 8 H 0.053 0.947 9 C -0.019 4.019 10 H 0.052 0.948 11 C -0.168 4.168 12 C -0.073 4.073 13 N -0.244 5.244 14 C -0.017 4.017 15 C -0.297 4.297 16 S 0.424 5.576 17 C -0.333 4.333 18 C -0.171 4.171 19 C -0.099 4.099 20 Cl -0.030 7.030 21 C -0.064 4.064 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.220 0.780 30 H 0.183 0.817 31 H 0.067 0.933 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.611 -10.097 -8.218 22.713 hybrid contribution 1.143 2.457 0.621 2.780 sum 19.754 -7.640 -7.596 22.501 Atomic orbital electron populations 1.70053 1.08182 1.27875 1.53134 1.25827 0.95346 1.02841 0.94356 0.85935 0.79446 0.79036 0.79159 1.19180 1.16901 1.22001 1.21308 0.90826 0.92896 1.49340 0.94744 1.19968 0.94376 0.93561 0.94024 0.94848 1.22839 0.97017 0.97703 0.99260 1.23187 0.95690 0.87978 1.00446 1.64734 1.19809 1.09845 1.30027 1.20707 0.92103 0.98116 0.90800 1.24328 1.01282 1.01511 1.02616 1.84446 1.37393 1.24152 1.11593 1.25950 1.00575 1.01900 1.04913 1.20048 1.03905 0.97845 0.95337 1.20008 0.99772 0.93070 0.97018 1.98350 1.82764 1.37663 1.84175 1.22697 0.96398 0.97581 0.89763 0.92662 0.92870 0.92619 0.92813 0.90757 0.92062 0.88821 0.78025 0.81681 0.93259 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.94 44.87 24.86 68.60 1.71 46.58 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.25 -10.79 6.40 99.48 0.64 -10.15 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.51 -29.06 8.96 25.60 0.23 -28.84 16 8 H 0.03 2.20 7.59 -2.91 -0.02 2.18 16 9 C 0.00 0.00 2.43 -10.66 -0.03 -0.02 16 10 H 0.03 1.55 7.09 -2.39 -0.02 1.53 16 11 C -0.13 -5.52 4.94 31.80 0.16 -5.36 16 12 C 0.05 1.91 4.75 86.65 0.41 2.32 16 13 N -0.52 -18.36 5.23 -887.54 -4.65 -23.00 16 14 C 0.11 3.13 4.93 85.56 0.42 3.55 16 15 C -0.18 -4.52 5.72 24.60 0.14 -4.38 16 16 S 0.16 3.36 23.33 -56.49 -1.32 2.04 16 17 C -0.20 -3.22 11.23 66.72 0.75 -2.47 16 18 C -0.14 -2.65 10.07 21.23 0.21 -2.44 16 19 C -0.06 -1.37 5.90 21.24 0.13 -1.25 16 20 Cl -0.06 -1.38 25.53 -2.72 -0.07 -1.45 16 21 C 0.06 2.49 6.31 86.45 0.55 3.04 16 22 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 23 H 0.05 2.50 7.86 -2.39 -0.02 2.48 16 24 H 0.06 2.25 6.17 -2.39 -0.01 2.23 16 25 H 0.05 1.74 6.60 -2.38 -0.02 1.72 16 26 H 0.07 2.52 7.81 -2.38 -0.02 2.51 16 27 H 0.06 1.65 7.20 -2.39 -0.02 1.64 16 28 H 0.09 2.41 8.08 -2.39 -0.02 2.39 16 29 H 0.20 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.05 1.71 7.77 -2.39 -0.02 1.69 16 32 H 0.06 2.68 7.39 -2.38 -0.02 2.67 16 Total: -1.00 -65.60 282.20 0.46 -65.14 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 1.05 Total: 5.25 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.43 Total: -34.61 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -4.35 Total: -82.95 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.71 Total: 46.58 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.32 Total: 2.04 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.07 Total: -1.45 kcal Total: -65.60 0.46 -65.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645909.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.947 kcal (2) G-P(sol) polarization free energy of solvation -65.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds