Wall clock time and date at job start Mon Mar 30 2020 07:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00395 * 2 1 4 4 H 1.48498 * 109.47520 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47097 * 299.99943 * 3 2 1 6 6 H 1.48504 * 109.46897 * 59.99652 * 3 2 1 7 7 C 1.37880 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99898 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.50566 * 300.08972 * 9 7 2 11 11 C 1.53103 * 109.54515 * 60.19349 * 9 7 2 12 12 O 1.43091 * 109.28277 * 176.81003 * 11 9 7 13 13 C 1.43020 * 113.68830 * 301.35605 * 12 11 9 14 14 C 1.53095 * 109.29124 * 58.65137 * 13 12 11 15 15 N 1.47013 * 109.50841 * 180.02562 * 9 7 2 16 16 C 1.46890 * 111.00431 * 57.62630 * 15 9 7 17 17 C 1.50693 * 109.47508 * 189.68380 * 16 15 9 18 18 O 1.34369 * 125.79978 * 270.02436 * 17 16 15 19 19 C 1.34300 * 109.48511 * 179.97438 * 18 17 16 20 20 C 1.34515 * 108.43903 * 359.97438 * 19 18 17 21 21 C 1.34586 * 125.80249 * 89.71520 * 17 16 15 22 22 Cl 1.73605 * 126.58190 * 359.97438 * 21 17 16 23 23 H 0.97006 * 119.99690 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.50599 * 296.74229 * 11 9 7 25 25 H 1.09004 * 109.49940 * 56.86969 * 11 9 7 26 26 H 1.09002 * 109.50941 * 298.69500 * 13 12 11 27 27 H 1.09003 * 109.50633 * 178.60964 * 13 12 11 28 28 H 1.09008 * 109.50518 * 63.06430 * 14 13 12 29 29 H 1.09003 * 109.51010 * 183.19294 * 14 13 12 30 30 H 1.09007 * 109.47085 * 309.69046 * 16 15 9 31 31 H 1.09007 * 109.47456 * 69.68019 * 16 15 9 32 32 H 1.08000 * 125.78121 * 180.02562 * 19 18 17 33 33 H 1.08004 * 126.57078 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6226 -2.5566 0.8893 11 6 0.3743 -2.5844 -1.2517 12 8 -0.2812 -3.8559 -1.2840 13 6 0.6196 -4.9669 -1.2845 14 6 1.4987 -4.9058 -0.0326 15 7 2.2056 -3.6172 0.0018 16 6 3.1050 -3.5403 1.1606 17 6 4.2111 -4.5520 1.0061 18 8 4.1817 -5.8218 1.4447 19 6 5.3374 -6.4304 1.1324 20 6 6.1214 -5.5489 0.4860 21 6 5.3938 -4.3391 0.4003 22 17 5.9249 -2.8626 -0.3425 23 1 -0.4850 0.8401 -0.0004 24 1 -0.3724 -1.7908 -1.2279 25 1 0.9965 -2.4731 -2.1398 26 1 1.2489 -4.9249 -2.1735 27 1 0.0507 -5.8967 -1.2848 28 1 0.8742 -5.0017 0.8557 29 1 2.2246 -5.7186 -0.0574 30 1 3.5335 -2.5399 1.2222 31 1 2.5438 -3.7517 2.0709 32 1 5.5936 -7.4545 1.3606 33 1 7.1146 -5.7312 0.1028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259925438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:03 Heat of formation + Delta-G solvation = -25.119487 kcal Electronic energy + Delta-G solvation = -19312.920074 eV Core-core repulsion = 16173.714055 eV Total energy + Delta-G solvation = -3139.206018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.48897 -38.57822 -36.23961 -35.12534 -33.12093 -32.58731 -30.38389 -29.87013 -26.88503 -25.34982 -23.46545 -22.35572 -21.63849 -20.33614 -19.29824 -17.30086 -16.74605 -16.12145 -15.33932 -15.17777 -14.78393 -14.52969 -13.99475 -13.65783 -13.40902 -13.25848 -12.99548 -12.80923 -12.39856 -12.00704 -11.89944 -11.45336 -11.04023 -10.91313 -10.68822 -10.42590 -10.37704 -10.20894 -9.79611 -9.43344 -9.16852 -8.77353 -8.46464 -8.18684 -7.40926 -6.16239 -4.20628 1.77582 2.42655 2.58430 3.22711 3.24979 3.33081 3.37681 4.31313 4.71609 4.84960 4.93416 5.03187 5.19438 5.36586 5.65278 5.74851 5.81887 5.91449 5.96020 6.02403 6.26003 6.34286 6.37916 6.42921 6.65641 6.81238 7.16017 7.21514 7.43122 7.63399 7.77996 8.07827 8.10690 8.45114 8.86722 9.45382 10.91799 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.008123 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.695955 B = 3446.088847 C = 4690.117230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.072 0.928 9 C 0.190 3.810 10 H 0.012 0.988 11 C 0.070 3.930 12 O -0.403 6.403 13 C 0.069 3.931 14 C 0.018 3.982 15 N -0.524 5.524 16 C 0.135 3.865 17 C 0.032 3.968 18 O -0.168 6.168 19 C -0.044 4.044 20 C -0.202 4.202 21 C -0.123 4.123 22 Cl -0.029 7.029 23 H 0.264 0.736 24 H 0.124 0.876 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.043 0.957 32 H 0.205 0.795 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 -10.342 1.299 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.090 0.910 9 C 0.084 3.916 10 H 0.030 0.970 11 C -0.006 4.006 12 O -0.322 6.322 13 C -0.008 4.008 14 C -0.111 4.111 15 N -0.250 5.250 16 C 0.008 3.992 17 C -0.020 4.020 18 O -0.064 6.064 19 C -0.111 4.111 20 C -0.222 4.222 21 C -0.152 4.152 22 Cl 0.000 7.000 23 H 0.074 0.926 24 H 0.142 0.858 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.061 0.939 32 H 0.221 0.779 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.348 -10.174 0.954 13.195 hybrid contribution 0.637 0.876 0.539 1.210 sum 8.984 -9.298 1.493 13.016 Atomic orbital electron populations 1.69850 1.05927 1.27012 1.50192 1.24965 0.94918 0.99389 0.94686 0.86432 0.80211 0.83169 0.77681 1.19494 1.20840 1.20958 1.21117 0.93628 0.89047 1.51178 0.91024 1.19894 0.89214 0.87717 0.94746 0.97028 1.23149 0.97442 0.82832 0.97182 1.87934 1.33772 1.15541 1.94999 1.22406 0.91907 0.90273 0.96249 1.22758 0.96628 0.93382 0.98327 1.62291 1.20973 1.02684 1.39051 1.20663 0.90285 0.95186 0.93111 1.22695 0.97128 0.83454 0.98705 1.84153 1.36346 1.22694 1.63249 1.23841 0.84674 0.99108 1.03517 1.21599 1.02132 0.92372 1.06082 1.20819 0.96317 0.91049 1.06974 1.98353 1.89718 1.31221 1.80724 0.92559 0.85795 0.94634 0.93493 0.90256 0.94963 0.91514 0.85736 0.93885 0.77883 0.83017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.43 11.37 55.43 0.63 -23.80 16 2 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.29 7.80 -34.44 -0.27 -13.56 16 8 H 0.07 1.85 6.57 -52.49 -0.34 1.51 16 9 C 0.19 4.69 1.97 -68.75 -0.14 4.55 16 10 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 11 C 0.07 1.72 6.03 37.21 0.22 1.95 16 12 O -0.40 -9.18 10.83 -35.23 -0.38 -9.56 16 13 C 0.07 1.30 7.01 37.21 0.26 1.56 16 14 C 0.02 0.34 5.47 -3.71 -0.02 0.32 16 15 N -0.52 -11.18 4.52 -229.16 -1.04 -12.22 16 16 C 0.14 2.64 5.12 -4.98 -0.03 2.61 16 17 C 0.03 0.56 5.90 -35.60 -0.21 0.35 16 18 O -0.17 -2.58 9.98 5.54 0.06 -2.53 16 19 C -0.04 -0.52 12.09 29.42 0.36 -0.17 16 20 C -0.20 -2.67 10.91 -39.68 -0.43 -3.10 16 21 C -0.12 -2.02 6.72 -39.66 -0.27 -2.29 16 22 Cl -0.03 -0.49 28.89 -51.86 -1.50 -1.99 16 23 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 24 H 0.12 3.31 6.19 -51.93 -0.32 2.99 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 29 H 0.07 1.16 6.69 -51.93 -0.35 0.81 16 30 H 0.12 2.60 5.82 -51.92 -0.30 2.29 16 31 H 0.04 0.82 8.12 -51.92 -0.42 0.40 16 32 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 289.30 15.07 4.36 4.36 Total: -1.00 -28.29 289.30 -7.34 -35.63 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -3.83 Total: 0.69 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.61 Total: -6.21 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.41 Total: -36.02 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.33 Total: -12.08 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.29 -7.34 -35.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.508 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds