Wall clock time and date at job start Mon Mar 30 2020 07:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00395 * 2 1 4 4 H 1.48498 * 109.47520 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47097 * 299.99943 * 3 2 1 6 6 H 1.48504 * 109.46897 * 59.99652 * 3 2 1 7 7 C 1.37880 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99898 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.50566 * 300.08972 * 9 7 2 11 11 C 1.53103 * 109.54515 * 60.19349 * 9 7 2 12 12 O 1.43091 * 109.28277 * 176.81003 * 11 9 7 13 13 C 1.43020 * 113.68830 * 301.35605 * 12 11 9 14 14 C 1.53095 * 109.29124 * 58.65137 * 13 12 11 15 15 N 1.47013 * 109.50841 * 180.02562 * 9 7 2 16 16 C 1.46890 * 111.00431 * 57.62630 * 15 9 7 17 17 C 1.50693 * 109.47508 * 189.68380 * 16 15 9 18 18 O 1.34369 * 125.79978 * 270.02436 * 17 16 15 19 19 C 1.34300 * 109.48511 * 179.97438 * 18 17 16 20 20 C 1.34515 * 108.43903 * 359.97438 * 19 18 17 21 21 C 1.34586 * 125.80249 * 89.71520 * 17 16 15 22 22 Cl 1.73605 * 126.58190 * 359.97438 * 21 17 16 23 23 H 0.97006 * 119.99690 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.50599 * 296.74229 * 11 9 7 25 25 H 1.09004 * 109.49940 * 56.86969 * 11 9 7 26 26 H 1.09002 * 109.50941 * 298.69500 * 13 12 11 27 27 H 1.09003 * 109.50633 * 178.60964 * 13 12 11 28 28 H 1.09008 * 109.50518 * 63.06430 * 14 13 12 29 29 H 1.09003 * 109.51010 * 183.19294 * 14 13 12 30 30 H 1.09007 * 109.47085 * 309.69046 * 16 15 9 31 31 H 1.09007 * 109.47456 * 69.68019 * 16 15 9 32 32 H 1.08000 * 125.78121 * 180.02562 * 19 18 17 33 33 H 1.08004 * 126.57078 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6226 -2.5566 0.8893 11 6 0.3743 -2.5844 -1.2517 12 8 -0.2812 -3.8559 -1.2840 13 6 0.6196 -4.9669 -1.2845 14 6 1.4987 -4.9058 -0.0326 15 7 2.2056 -3.6172 0.0018 16 6 3.1050 -3.5403 1.1606 17 6 4.2111 -4.5520 1.0061 18 8 4.1817 -5.8218 1.4447 19 6 5.3374 -6.4304 1.1324 20 6 6.1214 -5.5489 0.4860 21 6 5.3938 -4.3391 0.4003 22 17 5.9249 -2.8626 -0.3425 23 1 -0.4850 0.8401 -0.0004 24 1 -0.3724 -1.7908 -1.2279 25 1 0.9965 -2.4731 -2.1398 26 1 1.2489 -4.9249 -2.1735 27 1 0.0507 -5.8967 -1.2848 28 1 0.8742 -5.0017 0.8557 29 1 2.2246 -5.7186 -0.0574 30 1 3.5335 -2.5399 1.2222 31 1 2.5438 -3.7517 2.0709 32 1 5.5936 -7.4545 1.3606 33 1 7.1146 -5.7312 0.1028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:03 Heat of formation + Delta-G solvation = -43.893494 kcal Electronic energy + Delta-G solvation = -19313.734176 eV Core-core repulsion = 16173.714055 eV Total energy + Delta-G solvation = -3140.020120 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.63429 -40.31615 -37.53824 -36.82379 -35.07237 -33.72539 -31.75841 -31.68448 -28.41598 -27.24749 -25.05085 -24.08785 -22.77495 -21.58840 -21.04932 -18.71932 -18.35873 -17.65799 -16.97258 -16.78451 -16.36241 -16.02920 -15.76118 -15.41166 -14.86729 -14.66606 -14.48733 -14.11275 -13.90532 -13.58383 -13.20812 -13.10325 -12.85664 -12.65897 -12.50331 -12.16688 -12.07928 -11.72346 -11.57828 -11.05772 -10.71933 -10.54384 -10.32155 -9.45184 -9.13110 -8.19001 -6.29633 0.60872 1.18640 1.40481 1.43693 1.48192 1.54922 2.10164 2.39215 3.05578 3.12737 3.33386 3.64120 3.93202 4.10340 4.21301 4.30955 4.39011 4.54569 4.58406 4.63500 4.77666 4.81060 4.88282 4.92644 4.99462 5.26668 5.37154 5.47950 5.65367 5.90939 6.03718 6.15962 6.36114 6.58143 6.83477 7.39672 8.89011 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.008123 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.695955 B = 3446.088847 C = 4690.117230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.199 3.801 10 H -0.026 1.026 11 C 0.083 3.917 12 O -0.417 6.417 13 C 0.064 3.936 14 C 0.021 3.979 15 N -0.529 5.529 16 C 0.141 3.859 17 C 0.003 3.997 18 O -0.176 6.176 19 C -0.014 4.014 20 C -0.215 4.215 21 C -0.127 4.127 22 Cl -0.043 7.043 23 H 0.266 0.734 24 H 0.098 0.902 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.118 0.882 28 H 0.025 0.975 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.038 0.962 32 H 0.257 0.743 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.336 -12.310 1.237 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.092 3.908 10 H -0.009 1.009 11 C 0.006 3.994 12 O -0.336 6.336 13 C -0.013 4.013 14 C -0.107 4.107 15 N -0.254 5.254 16 C 0.014 3.986 17 C -0.049 4.049 18 O -0.072 6.072 19 C -0.081 4.081 20 C -0.234 4.234 21 C -0.156 4.156 22 Cl -0.014 7.014 23 H 0.075 0.925 24 H 0.116 0.884 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.136 0.864 28 H 0.044 0.956 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.056 0.944 32 H 0.273 0.727 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.060 -12.160 0.894 15.807 hybrid contribution 0.162 1.321 0.588 1.455 sum 10.222 -10.839 1.482 14.973 Atomic orbital electron populations 1.69972 1.07171 1.27733 1.50950 1.25687 0.95612 1.02379 0.94411 0.85510 0.79106 0.79458 0.77691 1.19104 1.20492 1.20563 1.21318 0.93594 0.89951 1.50864 0.91277 1.19614 0.89294 0.88873 0.93047 1.00873 1.22763 0.96417 0.83449 0.96734 1.87892 1.34953 1.15720 1.95065 1.22735 0.92134 0.90186 0.96256 1.22800 0.96963 0.92785 0.98173 1.62251 1.20370 1.02680 1.40139 1.20377 0.90573 0.95473 0.92202 1.22059 0.96888 0.84388 1.01534 1.84141 1.37992 1.21753 1.63354 1.24899 0.82515 1.00404 1.00295 1.21929 1.03478 0.91006 1.07014 1.21160 0.96648 0.91536 1.06210 1.98346 1.89741 1.32441 1.80904 0.92486 0.88446 0.95288 0.92962 0.86364 0.95631 0.89214 0.87783 0.94422 0.72728 0.80406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.84 11.37 21.45 0.24 -51.60 16 2 C 0.02 1.01 5.31 84.66 0.45 1.46 16 3 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.52 -27.74 7.80 25.60 0.20 -27.54 16 8 H 0.07 3.67 6.57 -2.91 -0.02 3.65 16 9 C 0.20 10.12 1.97 44.18 0.09 10.21 16 10 H -0.03 -1.51 8.14 -2.39 -0.02 -1.53 16 11 C 0.08 4.20 6.03 72.02 0.43 4.64 16 12 O -0.42 -19.01 10.83 -148.98 -1.61 -20.63 16 13 C 0.06 2.29 7.01 72.01 0.50 2.79 16 14 C 0.02 0.78 5.47 86.31 0.47 1.25 16 15 N -0.53 -22.76 4.52 -878.93 -3.97 -26.73 16 16 C 0.14 5.60 5.12 85.56 0.44 6.04 16 17 C 0.00 0.10 5.90 24.85 0.15 0.24 16 18 O -0.18 -4.90 9.98 -3.10 -0.03 -4.93 16 19 C -0.01 -0.28 12.09 66.97 0.81 0.53 16 20 C -0.22 -4.91 10.91 22.20 0.24 -4.67 16 21 C -0.13 -3.96 6.72 22.22 0.15 -3.81 16 22 Cl -0.04 -1.44 28.89 -2.72 -0.08 -1.52 16 23 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 24 H 0.10 5.44 6.19 -2.39 -0.01 5.42 16 25 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.09 2.92 6.69 -2.39 -0.02 2.90 16 30 H 0.10 4.49 5.82 -2.38 -0.01 4.48 16 31 H 0.04 1.49 8.12 -2.38 -0.02 1.47 16 32 H 0.26 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -62.76 289.30 1.63 -61.14 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.12 Total: 8.17 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 3.93 Total: -8.86 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -3.73 Total: -78.33 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -1.65 Total: -25.56 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -62.76 1.63 -61.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.242 kcal (2) G-P(sol) polarization free energy of solvation -62.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds