Wall clock time and date at job start Mon Mar 30 2020 07:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35975 * 116.99925 * 2 1 4 4 C 1.38716 * 119.99847 * 0.02562 * 3 2 1 5 5 C 1.38201 * 119.98770 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 120.01063 * 180.02562 * 5 4 3 7 7 C 1.38824 * 119.97775 * 0.02562 * 5 4 3 8 8 O 1.36013 * 120.00084 * 180.02562 * 7 5 4 9 9 C 1.42895 * 117.00235 * 269.97911 * 8 7 5 10 10 C 1.38626 * 119.99588 * 359.97438 * 7 5 4 11 11 C 1.50696 * 119.99654 * 179.97438 * 10 7 5 12 12 H 1.09001 * 109.47545 * 325.00329 * 11 10 7 13 13 N 1.46900 * 109.47209 * 205.00026 * 11 10 7 14 14 C 1.50706 * 109.47259 * 84.99988 * 11 10 7 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00102 * 180.02562 * 14 11 10 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.38185 * 120.00905 * 0.25372 * 10 7 5 23 23 H 1.09003 * 109.46875 * 299.99417 * 1 2 3 24 24 H 1.08997 * 109.47171 * 59.99729 * 1 2 3 25 25 H 1.09000 * 109.47287 * 180.02562 * 1 2 3 26 26 H 1.07993 * 120.00380 * 0.02562 * 4 3 2 27 27 H 1.09008 * 109.46856 * 300.00100 * 9 8 7 28 28 H 1.08997 * 109.47121 * 59.99534 * 9 8 7 29 29 H 1.09002 * 109.47180 * 180.02562 * 9 8 7 30 30 H 1.00900 * 111.00100 * 299.99420 * 13 11 10 31 31 H 1.00898 * 111.00378 * 63.95632 * 13 11 10 32 32 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 33 33 H 1.08001 * 119.98838 * 179.72475 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3749 0.0005 5 6 1.9184 3.6062 0.0011 6 17 0.9735 5.0624 0.0024 7 6 3.3048 3.6780 0.0005 8 8 3.9230 4.8896 0.0016 9 6 4.2177 5.4687 -1.2711 10 6 4.0591 2.5150 0.0000 11 6 5.5640 2.5930 -0.0012 12 1 5.8829 3.4524 -0.5908 13 7 6.1176 1.3647 -0.5869 14 6 6.0604 2.7427 1.4139 15 1 5.3565 2.7774 2.2323 16 6 7.4131 2.8353 1.6638 17 7 8.2704 2.7935 0.6672 18 14 8.0283 3.0216 3.4177 19 1 9.5113 3.0984 3.4166 20 1 7.4683 4.2632 4.0095 21 1 7.5944 1.8507 4.2215 22 6 3.4312 1.2840 -0.0053 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 0.2124 2.3184 0.0014 27 1 4.8773 4.8037 -1.8288 28 1 3.2919 5.6127 -1.8279 29 1 4.7093 6.4309 -1.1274 30 1 5.8362 0.5531 -0.0577 31 1 5.8518 1.2746 -1.5560 32 1 7.9508 2.6972 -0.2436 33 1 4.0191 0.3781 -0.0102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260164502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:23 Heat of formation + Delta-G solvation = -73.928154 kcal Electronic energy + Delta-G solvation = -19068.572540 eV Core-core repulsion = 15927.250019 eV Total energy + Delta-G solvation = -3141.322521 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.59956 -39.92876 -37.81943 -37.76995 -36.19988 -33.53303 -31.22340 -30.74062 -28.46747 -27.66593 -27.30431 -24.86241 -23.21965 -22.04218 -19.34388 -18.78926 -18.50821 -18.08694 -16.87471 -16.50454 -16.40132 -16.06684 -15.75606 -15.53748 -15.32579 -14.77488 -14.46972 -14.17254 -13.85329 -13.74028 -13.14180 -12.85658 -12.68827 -12.60708 -12.40862 -12.15533 -12.03957 -11.88747 -11.64510 -10.95030 -10.80888 -10.45911 -9.79221 -9.38921 -9.13800 -8.36776 -6.20618 -0.03937 0.12657 0.94167 1.56336 1.63684 1.82806 2.22165 2.31285 2.65407 2.85890 3.32990 3.66052 3.81812 4.10825 4.15412 4.29599 4.32189 4.36975 4.37302 4.39715 4.52374 4.64461 4.68389 4.74337 4.92609 5.08345 5.30284 5.44381 5.93278 6.20144 6.24537 6.51523 6.64826 6.78682 7.01561 7.66875 9.00681 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.007076 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.983699 B = 3956.074695 C = 4770.317193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C 0.142 3.858 4 C -0.199 4.199 5 C -0.020 4.020 6 Cl -0.049 7.049 7 C 0.052 3.948 8 O -0.335 6.335 9 C 0.035 3.965 10 C -0.061 4.061 11 C 0.253 3.747 12 H 0.022 0.978 13 N -0.835 5.835 14 C -0.606 4.606 15 H 0.029 0.971 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 1.105 2.895 19 H -0.283 1.283 20 H -0.280 1.280 21 H -0.276 1.276 22 C -0.155 4.155 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.126 0.874 26 H 0.170 0.830 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.332 0.668 31 H 0.320 0.680 32 H 0.278 0.722 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 -1.264 -4.181 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.096 3.904 4 C -0.218 4.218 5 C -0.047 4.047 6 Cl -0.020 7.020 7 C 0.007 3.993 8 O -0.252 6.252 9 C -0.059 4.059 10 C -0.064 4.064 11 C 0.144 3.856 12 H 0.040 0.960 13 N -0.365 5.365 14 C -0.644 4.644 15 H 0.047 0.953 16 C -0.210 4.210 17 N -0.552 5.552 18 Si 0.929 3.071 19 H -0.208 1.208 20 H -0.206 1.206 21 H -0.201 1.201 22 C -0.175 4.175 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.144 0.856 26 H 0.187 0.813 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.256 -0.756 -2.993 15.565 hybrid contribution -2.487 -0.144 -1.308 2.814 sum -17.743 -0.900 -4.301 18.279 Atomic orbital electron populations 1.23467 0.75935 1.06113 1.02570 1.86114 1.23926 1.25344 1.88396 1.18704 0.91353 0.84730 0.95634 1.21067 1.01623 0.89036 1.10055 1.21131 0.90276 0.88927 1.04380 1.98333 1.71195 1.35709 1.96748 1.18316 0.88725 0.86015 1.06234 1.86119 1.78107 1.30809 1.30152 1.23072 1.00159 0.98641 0.84058 1.21392 0.99595 0.91645 0.93765 1.17898 0.83003 0.89487 0.95238 0.96048 1.59202 1.67157 1.05231 1.04884 1.21794 0.94177 1.57123 0.91328 0.95305 1.26819 0.93595 0.92575 1.07962 1.70672 1.37887 1.44766 1.01902 0.83098 0.75641 0.77231 0.71161 1.20798 1.20561 1.20138 1.20265 0.92158 0.97804 1.07235 0.91616 0.91190 0.85612 0.81284 0.94810 0.92322 0.87455 0.85348 0.86836 0.91010 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.32 -8.61 10.50 -93.27 -0.98 -9.59 16 3 C 0.14 4.46 6.68 22.49 0.15 4.61 16 4 C -0.20 -5.70 8.82 22.38 0.20 -5.50 16 5 C -0.02 -0.66 6.33 22.40 0.14 -0.52 16 6 Cl -0.05 -1.39 28.50 -2.72 -0.08 -1.47 16 7 C 0.05 2.12 5.69 22.50 0.13 2.25 16 8 O -0.34 -14.04 9.14 -93.70 -0.86 -14.89 16 9 C 0.03 1.15 10.80 113.37 1.22 2.37 16 10 C -0.06 -2.61 4.99 -19.79 -0.10 -2.71 16 11 C 0.25 12.63 2.18 43.42 0.09 12.73 16 12 H 0.02 1.19 6.28 -2.39 -0.01 1.17 16 13 N -0.84 -38.09 7.38 -174.95 -1.29 -39.38 16 14 C -0.61 -34.65 8.71 25.60 0.22 -34.42 16 15 H 0.03 1.71 7.74 -2.91 -0.02 1.68 16 16 C -0.01 -0.33 5.39 84.65 0.46 0.13 16 17 N -0.92 -55.99 13.51 21.45 0.29 -55.70 16 18 Si 1.10 52.06 29.90 68.60 2.05 54.11 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 C -0.16 -5.83 9.20 22.36 0.21 -5.62 16 23 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 24 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 25 H 0.13 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.17 3.57 6.29 -2.91 -0.02 3.55 16 27 H 0.03 1.17 7.17 -2.38 -0.02 1.16 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.33 14.59 7.20 -89.69 -0.65 13.94 16 31 H 0.32 12.66 9.06 -89.70 -0.81 11.85 16 32 H 0.28 17.06 6.40 -92.71 -0.59 16.47 16 33 H 0.13 4.91 6.28 -2.91 -0.02 4.89 16 Total: -1.00 -68.56 295.03 2.85 -65.71 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: -0.12 Total: 26.58 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 3.83 Total: -25.37 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -1.00 Total: -95.08 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -1.84 Total: -24.48 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.05 Total: 54.11 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -68.56 2.85 -65.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260164502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.217 kcal (2) G-P(sol) polarization free energy of solvation -68.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds