Wall clock time and date at job start Mon Mar 30 2020 07:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47228 * 2 1 4 4 C 1.52997 * 109.47113 * 119.99919 * 2 1 3 5 5 H 1.08999 * 109.47538 * 54.88608 * 4 2 1 6 6 C 1.50701 * 109.47399 * 174.88744 * 4 2 1 7 7 H 1.07996 * 120.00112 * 114.57198 * 6 4 2 8 8 C 1.37874 * 119.99810 * 294.56873 * 6 4 2 9 9 N 1.31510 * 120.00365 * 350.90445 * 8 6 4 10 10 Si 1.86806 * 120.00014 * 170.89964 * 8 6 4 11 11 H 1.48496 * 109.46905 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46717 * 120.00148 * 10 8 6 13 13 H 1.48495 * 109.47328 * 240.00125 * 10 8 6 14 14 N 1.46503 * 109.47081 * 294.88617 * 4 2 1 15 15 C 1.34780 * 119.99647 * 84.99999 * 14 4 2 16 16 O 1.21708 * 120.00526 * 0.02562 * 15 14 4 17 17 C 1.46503 * 119.99647 * 179.97438 * 15 14 4 18 18 O 1.34986 * 126.00756 * 0.27835 * 17 15 14 19 19 C 1.33944 * 109.40104 * 180.15482 * 18 17 15 20 20 C 1.35076 * 108.81933 * 359.60466 * 19 18 17 21 21 C 1.36711 * 126.00602 * 179.97438 * 17 15 14 22 22 Cl 1.73596 * 126.66795 * 359.96481 * 21 17 15 23 23 H 1.08998 * 109.47174 * 307.12479 * 1 2 3 24 24 H 1.09003 * 109.46813 * 67.12236 * 1 2 3 25 25 H 1.08998 * 109.47126 * 187.12409 * 1 2 3 26 26 H 1.09003 * 109.47186 * 239.99828 * 2 1 3 27 27 H 1.09004 * 109.46909 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46764 * 299.99749 * 3 2 1 29 29 H 1.09003 * 109.47177 * 59.99822 * 3 2 1 30 30 H 0.96994 * 120.00681 * 180.02562 * 9 8 6 31 31 H 0.96999 * 119.99975 * 264.99906 * 14 4 2 32 32 H 1.07999 * 125.58484 * 179.86332 * 19 18 17 33 33 H 1.07999 * 126.43647 * 180.25750 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6038 -1.7190 1.2963 6 6 3.5417 -0.8318 1.1876 7 1 4.1517 -0.3095 1.9097 8 6 4.1367 -1.6000 0.2094 9 7 3.4007 -2.3760 -0.5558 10 14 5.9885 -1.5383 -0.0290 11 1 6.5827 -0.5951 0.9520 12 1 6.5596 -2.8932 0.1790 13 1 6.2951 -1.0781 -1.4072 14 7 1.6547 0.0368 2.4422 15 6 0.4376 -0.1446 2.9920 16 8 -0.3413 -0.9385 2.4977 17 6 0.0526 0.6130 4.1853 18 8 0.8150 1.5230 4.8278 19 6 0.1386 2.0092 5.8767 20 6 -1.0778 1.4234 5.9202 21 6 -1.1442 0.5270 4.8405 22 17 -2.4855 -0.4916 4.4197 23 1 -0.3633 0.6202 0.8194 24 1 -0.3633 0.3995 -0.9469 25 1 -0.3633 -1.0197 0.1274 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.8194 -2.9166 -1.2437 31 1 2.2756 0.6693 2.8364 32 1 0.5041 2.7513 6.5710 33 1 -1.8538 1.6097 6.6478 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260177272.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:04 Heat of formation + Delta-G solvation = -54.553560 kcal Electronic energy + Delta-G solvation = -19079.776912 eV Core-core repulsion = 15939.294537 eV Total energy + Delta-G solvation = -3140.482376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.75317 -40.61614 -37.78187 -37.42533 -34.38087 -33.98974 -33.69002 -30.99471 -28.90398 -27.75598 -25.32667 -23.83387 -22.83926 -21.59487 -20.34693 -19.87518 -18.20166 -17.55276 -17.26740 -17.00814 -16.18479 -16.06162 -15.22549 -14.89520 -14.65037 -14.44535 -14.27317 -14.21380 -13.91848 -13.37700 -13.27811 -12.93775 -12.82237 -12.77362 -12.21455 -12.05003 -11.96085 -11.76713 -11.45361 -11.00261 -10.93678 -10.69342 -10.50941 -9.86739 -9.52730 -8.16876 -6.28046 -0.06943 0.95169 1.26855 1.44212 1.46566 1.57397 1.81291 2.19544 2.37645 2.60734 3.15671 3.69739 3.83949 4.23567 4.40283 4.45894 4.47930 4.55284 4.77834 4.88174 5.02618 5.11005 5.18767 5.27644 5.38748 5.52730 5.56336 5.67997 5.70036 5.77288 5.95576 6.10727 6.76858 6.87213 7.29344 7.45399 8.92114 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.005577 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.785042 B = 5019.302233 C = 5399.072570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.096 4.096 3 C -0.118 4.118 4 C 0.284 3.716 5 H 0.005 0.995 6 C -0.538 4.538 7 H 0.070 0.930 8 C 0.022 3.978 9 N -0.916 5.916 10 Si 0.961 3.039 11 H -0.259 1.259 12 H -0.287 1.287 13 H -0.279 1.279 14 N -0.688 5.688 15 C 0.577 3.423 16 O -0.546 6.546 17 C -0.082 4.082 18 O -0.156 6.156 19 C 0.029 3.971 20 C -0.222 4.222 21 C -0.067 4.067 22 Cl -0.024 7.024 23 H 0.039 0.961 24 H 0.045 0.955 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.272 0.728 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.501 11.711 12.528 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.116 4.116 3 C -0.176 4.176 4 C 0.181 3.819 5 H 0.023 0.977 6 C -0.576 4.576 7 H 0.088 0.912 8 C -0.179 4.179 9 N -0.554 5.554 10 Si 0.786 3.214 11 H -0.183 1.183 12 H -0.213 1.213 13 H -0.205 1.205 14 N -0.336 5.336 15 C 0.363 3.637 16 O -0.426 6.426 17 C -0.136 4.136 18 O -0.051 6.051 19 C -0.040 4.040 20 C -0.242 4.242 21 C -0.097 4.097 22 Cl 0.005 6.995 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.287 0.713 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.829 10.991 11.854 17.184 hybrid contribution 0.673 -0.471 -0.270 0.864 sum -5.156 10.520 11.584 16.476 Atomic orbital electron populations 1.21717 0.96572 0.99939 0.99425 1.21333 0.93515 0.96876 0.99901 1.21546 1.00976 0.94891 1.00142 1.18484 0.93986 0.89240 0.80167 0.97699 1.21431 0.91005 1.30419 1.14778 0.91196 1.25662 1.02673 0.93944 0.95590 1.70122 1.37463 1.26095 1.21694 0.85468 0.79841 0.77817 0.78285 1.18288 1.21285 1.20499 1.46168 1.14439 1.42957 1.29990 1.16853 0.83080 0.82109 0.81702 1.90877 1.52199 1.37091 1.62475 1.21835 0.92514 0.99694 0.99539 1.84204 1.41305 1.44045 1.35580 1.25455 0.90563 0.99128 0.88862 1.22012 1.01363 1.00052 1.00724 1.21657 0.90338 0.98956 0.98786 1.98368 1.42132 1.66067 1.92905 0.94168 0.93584 0.95217 0.92413 0.92865 0.93423 0.93331 0.92686 0.76164 0.71274 0.78885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 7.67 71.98 0.55 -4.75 16 2 C -0.10 -4.52 2.64 -10.79 -0.03 -4.55 16 3 C -0.12 -4.66 8.79 71.98 0.63 -4.03 16 4 C 0.28 14.29 1.80 44.24 0.08 14.37 16 5 H 0.01 0.31 7.52 -2.39 -0.02 0.29 16 6 C -0.54 -27.85 7.65 25.60 0.20 -27.66 16 7 H 0.07 3.43 7.73 -2.91 -0.02 3.41 16 8 C 0.02 1.16 5.16 84.65 0.44 1.60 16 9 N -0.92 -52.45 12.14 21.45 0.26 -52.19 16 10 Si 0.96 41.70 29.55 68.60 2.03 43.72 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 12 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 14 N -0.69 -28.97 4.04 -450.24 -1.82 -30.79 16 15 C 0.58 24.03 6.42 86.40 0.55 24.58 16 16 O -0.55 -26.18 12.55 -4.37 -0.05 -26.23 16 17 C -0.08 -2.72 7.13 24.07 0.17 -2.55 16 18 O -0.16 -3.96 10.40 -5.90 -0.06 -4.02 16 19 C 0.03 0.44 12.07 67.09 0.81 1.25 16 20 C -0.22 -4.19 10.88 22.09 0.24 -3.95 16 21 C -0.07 -1.97 6.76 22.46 0.15 -1.82 16 22 Cl -0.02 -0.74 27.84 -2.72 -0.08 -0.82 16 23 H 0.04 1.73 6.28 -2.39 -0.02 1.71 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 25 H 0.03 1.44 7.43 -2.39 -0.02 1.43 16 26 H 0.06 3.09 6.78 -2.39 -0.02 3.07 16 27 H 0.05 2.15 7.38 -2.38 -0.02 2.13 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.75 7.47 -2.39 -0.02 1.73 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.40 14.97 8.28 -92.71 -0.77 14.21 16 32 H 0.27 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -67.15 294.39 4.44 -62.70 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.37 Total: 15.14 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 3.80 Total: -7.51 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -1.56 Total: -82.98 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.12 Total: -30.25 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -67.15 4.44 -62.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260177272.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.151 kcal (2) G-P(sol) polarization free energy of solvation -67.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds