Wall clock time and date at job start Mon Mar 30 2020 07:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 119.99887 * 2 1 4 4 N 1.34774 * 120.00361 * 179.97438 * 2 1 3 5 5 C 1.46504 * 120.00297 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47128 * 34.99850 * 5 4 2 7 7 C 1.50705 * 109.46716 * 274.99934 * 5 4 2 8 8 H 1.08000 * 119.99474 * 119.99780 * 7 5 4 9 9 C 1.37868 * 119.99990 * 299.99686 * 7 5 4 10 10 N 1.31511 * 120.00259 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 119.99762 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47547 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46940 * 120.00498 * 11 9 7 14 14 H 1.48502 * 109.47099 * 239.99764 * 11 9 7 15 15 C 1.50693 * 109.47175 * 155.00280 * 5 4 2 16 16 C 1.38210 * 120.00129 * 25.24760 * 15 5 4 17 17 C 1.38430 * 119.99304 * 180.32077 * 16 15 5 18 18 F 1.35094 * 120.01587 * 179.68191 * 17 16 15 19 19 C 1.38486 * 119.97260 * 359.70724 * 17 16 15 20 20 C 1.38164 * 119.98617 * 359.97438 * 19 17 16 21 21 C 1.38335 * 119.98911 * 204.99898 * 15 5 4 22 22 Cl 1.73599 * 119.99126 * 359.97438 * 21 15 5 23 23 H 1.09002 * 109.46971 * 240.00287 * 1 2 3 24 24 H 1.08997 * 109.47388 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47000 * 120.00675 * 1 2 3 26 26 H 0.96997 * 120.00026 * 359.97438 * 4 2 1 27 27 H 0.97003 * 120.00004 * 179.97438 * 10 9 7 28 28 H 1.08002 * 120.00144 * 0.02562 * 16 15 5 29 29 H 1.07999 * 120.00400 * 179.97438 * 19 17 16 30 30 H 1.07997 * 119.99206 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0011 6 1 4.0091 -0.3252 0.5905 7 6 4.1488 -1.0436 -1.4142 8 1 4.7697 -0.2059 -1.6954 9 6 3.8161 -2.0000 -2.3499 10 7 3.0595 -3.0197 -2.0075 11 14 4.4399 -1.8472 -4.1040 12 1 5.2658 -0.6196 -4.2306 13 1 5.2648 -3.0351 -4.4412 14 1 3.2855 -1.7659 -5.0346 15 6 4.1481 -2.4546 0.6019 16 6 3.3578 -3.5880 0.5670 17 6 3.8165 -4.7689 1.1249 18 9 3.0418 -5.8753 1.0967 19 6 5.0697 -4.8156 1.7124 20 6 5.8615 -3.6838 1.7410 21 6 5.4021 -2.5033 1.1839 22 17 6.3972 -1.0813 1.2211 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5140 -0.8900 26 1 1.6960 -2.0072 0.0013 27 1 2.8252 -3.6924 -2.6660 28 1 2.3805 -3.5510 0.1087 29 1 5.4279 -5.7365 2.1482 30 1 6.8390 -3.7202 2.1987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260218027.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:02 Heat of formation + Delta-G solvation = -83.275115 kcal Electronic energy + Delta-G solvation = -18855.398336 eV Core-core repulsion = 15590.210195 eV Total energy + Delta-G solvation = -3265.188141 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.74012 -40.67806 -39.55481 -37.15707 -36.35682 -33.91507 -32.26606 -31.16820 -30.27121 -28.39350 -25.17178 -23.66343 -22.36272 -21.08109 -18.67452 -18.54123 -17.62894 -17.29839 -16.95375 -16.71993 -16.41046 -16.10030 -15.75028 -14.82928 -14.69376 -14.47972 -14.16179 -13.87211 -13.74991 -13.21348 -13.13327 -12.98115 -12.88648 -12.68898 -12.23438 -12.08589 -11.83377 -11.80947 -11.40502 -10.83858 -10.52119 -9.71333 -9.57872 -9.22643 -8.12445 -6.32328 0.21654 0.47908 1.34181 1.38643 1.40235 1.49404 2.03827 2.38750 2.67265 2.82123 3.19733 3.43655 3.95315 4.06231 4.21389 4.45664 4.51729 4.63510 4.74794 4.86041 4.97258 5.10462 5.15453 5.24777 5.35287 5.64036 5.68618 5.98734 6.08500 6.09743 6.65321 7.08577 7.38537 7.73806 8.80297 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.009135 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.109945 B = 3064.486064 C = 3215.710206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.489 3.511 3 O -0.618 6.618 4 N -0.694 5.694 5 C 0.296 3.704 6 H 0.043 0.957 7 C -0.524 4.524 8 H 0.040 0.960 9 C 0.049 3.951 10 N -0.879 5.879 11 Si 0.940 3.060 12 H -0.282 1.282 13 H -0.278 1.278 14 H -0.279 1.279 15 C -0.026 4.026 16 C -0.095 4.095 17 C 0.074 3.926 18 F -0.146 7.146 19 C -0.153 4.153 20 C -0.091 4.091 21 C -0.060 4.060 22 Cl -0.075 7.075 23 H 0.108 0.892 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.399 0.601 27 H 0.267 0.733 28 H 0.143 0.857 29 H 0.166 0.834 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 -5.386 6.860 8.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.277 3.723 3 O -0.502 6.502 4 N -0.344 5.344 5 C 0.193 3.807 6 H 0.061 0.939 7 C -0.563 4.563 8 H 0.058 0.942 9 C -0.155 4.155 10 N -0.516 5.516 11 Si 0.767 3.233 12 H -0.208 1.208 13 H -0.204 1.204 14 H -0.205 1.205 15 C -0.028 4.028 16 C -0.115 4.115 17 C 0.055 3.945 18 F -0.125 7.125 19 C -0.172 4.172 20 C -0.109 4.109 21 C -0.088 4.088 22 Cl -0.046 7.046 23 H 0.127 0.873 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.235 0.765 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.184 0.816 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.478 -4.755 6.782 8.296 hybrid contribution 0.158 -0.254 -1.435 1.466 sum -0.320 -5.009 5.347 7.334 Atomic orbital electron populations 1.21857 0.89093 1.05442 1.05480 1.21477 0.92050 0.83319 0.75440 1.90588 1.72451 1.33241 1.53886 1.46539 1.08283 1.08101 1.71457 1.17347 0.78787 0.90137 0.94442 0.93896 1.21293 1.32269 1.08285 0.94417 0.94214 1.25347 0.94620 0.94432 1.01063 1.69811 1.35701 1.11335 1.34716 0.85786 0.78292 0.77689 0.81532 1.20763 1.20354 1.20466 1.19894 0.92815 0.97483 0.92597 1.20873 1.02566 0.90424 0.97619 1.17928 0.91165 0.83104 1.02349 1.91434 1.74784 1.51306 1.94981 1.21146 0.92554 1.00447 1.03037 1.20959 1.01059 0.89473 0.99419 1.20909 0.93092 0.89671 1.05083 1.98317 1.68722 1.40178 1.97418 0.87330 0.89203 0.88700 0.76455 0.92315 0.83989 0.81610 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 10.32 71.24 0.74 -3.83 16 2 C 0.49 20.82 7.90 87.66 0.69 21.51 16 3 O -0.62 -32.12 16.75 -3.03 -0.05 -32.17 16 4 N -0.69 -30.02 4.40 -449.69 -1.98 -32.00 16 5 C 0.30 14.17 1.92 43.50 0.08 14.25 16 6 H 0.04 2.23 6.56 -2.39 -0.02 2.21 16 7 C -0.52 -27.81 8.86 25.60 0.23 -27.58 16 8 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 9 C 0.05 2.47 5.23 84.65 0.44 2.91 16 10 N -0.88 -42.33 9.19 21.44 0.20 -42.13 16 11 Si 0.94 42.18 29.54 68.60 2.03 44.21 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 15 C -0.03 -1.10 4.64 -19.85 -0.09 -1.19 16 16 C -0.09 -3.77 7.31 22.31 0.16 -3.61 16 17 C 0.07 2.59 7.30 22.37 0.16 2.75 16 18 F -0.15 -4.97 17.27 44.97 0.78 -4.20 16 19 C -0.15 -4.51 10.03 22.31 0.22 -4.29 16 20 C -0.09 -2.78 9.83 22.29 0.22 -2.56 16 21 C -0.06 -2.31 6.31 22.33 0.14 -2.17 16 22 Cl -0.08 -2.83 27.40 -2.72 -0.07 -2.91 16 23 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.09 2.42 8.12 -2.39 -0.02 2.40 16 25 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 26 H 0.40 15.73 5.94 -92.71 -0.55 15.18 16 27 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 28 H 0.14 5.79 5.07 -2.91 -0.01 5.78 16 29 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -61.22 279.71 4.54 -56.68 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.64 Total: 16.33 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 3.00 Total: -3.81 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.78 Total: -74.13 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.05 Total: -32.17 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.78 Total: -4.20 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.07 Total: -2.91 kcal Total: -61.22 4.54 -56.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218027.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.596 kcal (2) G-P(sol) polarization free energy of solvation -61.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds