Wall clock time and date at job start Mon Mar 30 2020 07:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76198 * 103.00125 * 2 1 4 4 C 1.38975 * 120.07091 * 0.02562 * 3 2 1 5 5 C 1.38182 * 119.90488 * 179.97438 * 4 3 2 6 6 Cl 1.73596 * 119.97450 * 179.97438 * 5 4 3 7 7 C 1.38444 * 120.05153 * 359.97308 * 5 4 3 8 8 C 1.38259 * 120.15140 * 0.04690 * 7 5 4 9 9 C 1.50698 * 119.95574 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.46965 * 159.97994 * 9 8 7 11 11 N 1.46900 * 109.47002 * 39.97696 * 9 8 7 12 12 C 1.53004 * 109.47156 * 279.97739 * 9 8 7 13 13 C 1.50695 * 109.47055 * 184.99991 * 12 9 8 14 14 H 1.08002 * 120.00197 * 0.02562 * 13 12 9 15 15 C 1.37877 * 119.99918 * 179.97438 * 13 12 9 16 16 N 1.31515 * 120.00167 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99959 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47190 * 89.99535 * 17 15 13 19 19 H 1.48504 * 109.46993 * 209.99671 * 17 15 13 20 20 H 1.48502 * 109.47057 * 329.99863 * 17 15 13 21 21 C 1.38113 * 120.08936 * 359.95448 * 8 7 5 22 22 H 1.08996 * 109.46949 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47014 * 300.00170 * 1 2 3 24 24 H 1.09003 * 109.47151 * 59.99771 * 1 2 3 25 25 H 1.08000 * 120.04890 * 359.69668 * 4 3 2 26 26 H 1.07996 * 119.92482 * 180.02562 * 7 5 4 27 27 H 1.00903 * 110.99934 * 176.04791 * 11 9 8 28 28 H 1.00900 * 110.99919 * 299.99808 * 11 9 8 29 29 H 1.09001 * 109.46549 * 305.00229 * 12 9 8 30 30 H 1.09000 * 109.46669 * 64.99702 * 12 9 8 31 31 H 0.96997 * 120.00158 * 180.02562 * 16 15 13 32 32 H 1.08007 * 120.02663 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1952 2.6659 0.0005 5 6 1.5100 4.0114 0.0011 6 17 0.2434 5.1984 0.0011 7 6 2.8348 4.4135 0.0016 8 6 3.8465 3.4712 0.0007 9 6 5.2870 3.9138 0.0007 10 1 5.9180 3.0972 0.3518 11 7 5.4436 5.0714 0.8914 12 6 5.7009 4.3036 -1.4198 13 6 7.1722 4.6284 -1.4431 14 1 7.7541 4.5630 -0.5356 15 6 7.7758 5.0082 -2.6231 16 7 9.0597 5.2922 -2.6434 17 14 6.7694 5.1207 -4.1928 18 1 6.2119 6.4905 -4.3263 19 1 7.6383 4.8240 -5.3601 20 1 5.6582 4.1370 -4.1400 21 6 3.5388 2.1248 0.0001 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.1618 2.3523 -0.0040 26 1 3.0785 5.4656 0.0025 27 1 6.4118 5.3474 0.9590 28 1 4.8683 5.8424 0.5869 29 1 5.5013 3.4732 -2.0971 30 1 5.1309 5.1767 -1.7375 31 1 9.4842 5.5597 -3.4734 32 1 4.3300 1.3895 -0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260234820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:25 Heat of formation + Delta-G solvation = 4.484997 kcal Electronic energy + Delta-G solvation = -15976.321975 eV Core-core repulsion = 13281.152575 eV Total energy + Delta-G solvation = -2695.169401 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.049 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.43401 -36.63401 -35.53192 -32.54845 -30.77408 -30.70201 -28.94592 -28.63513 -24.74301 -22.86163 -22.02531 -20.01137 -17.70330 -16.81405 -16.36636 -15.83539 -14.99495 -14.69891 -14.42146 -14.08532 -13.94509 -13.65300 -13.40231 -13.11656 -12.79474 -12.39165 -12.20444 -11.75341 -11.70241 -11.51786 -11.16034 -10.96497 -10.56257 -10.41181 -10.34395 -9.89858 -9.51400 -9.33305 -8.70580 -8.64323 -7.91579 -7.48613 -6.16789 -4.17167 1.16826 1.25788 1.36961 2.00139 2.37675 3.22785 3.31606 3.35621 3.62763 4.34882 4.73433 4.80909 4.81844 5.02222 5.14482 5.16692 5.36655 5.40865 5.45636 5.63779 5.71889 6.03445 6.17784 6.21303 6.38017 6.66366 6.77134 6.98170 7.13501 7.61154 7.82375 8.11377 8.36406 8.85184 9.45083 10.95662 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.005372 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.237196 B = 5211.285235 C = 5819.522679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.111 6.111 3 C -0.074 4.074 4 C -0.140 4.140 5 C -0.014 4.014 6 Cl -0.077 7.077 7 C -0.102 4.102 8 C -0.020 4.020 9 C 0.135 3.865 10 H 0.088 0.912 11 N -0.838 5.838 12 C -0.038 4.038 13 C -0.527 4.527 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.876 3.124 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.091 4.091 22 H 0.107 0.893 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.129 0.871 26 H 0.135 0.865 27 H 0.355 0.645 28 H 0.329 0.671 29 H 0.022 0.978 30 H 0.013 0.987 31 H 0.265 0.735 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.072 -6.504 5.279 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.131 5.869 3 C -0.187 4.187 4 C -0.165 4.165 5 C -0.042 4.042 6 Cl -0.048 7.048 7 C -0.123 4.123 8 C -0.023 4.023 9 C 0.024 3.976 10 H 0.106 0.894 11 N -0.368 5.368 12 C -0.076 4.076 13 C -0.565 4.565 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.703 3.297 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.115 4.115 22 H 0.126 0.874 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.169 0.831 28 H 0.140 0.860 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.673 -7.893 5.740 20.188 hybrid contribution -1.037 1.858 -1.894 2.848 sum -18.710 -6.035 3.846 20.032 Atomic orbital electron populations 1.23679 0.95175 1.06977 1.05718 1.85526 1.05922 1.02660 1.92791 1.21513 0.96169 0.96166 1.04820 1.20836 0.98758 0.90980 1.05899 1.20696 0.89386 0.89332 1.04801 1.98353 1.51810 1.57604 1.97014 1.20896 0.89811 1.00879 1.00738 1.20102 0.96473 0.91902 0.93814 1.20377 0.88747 0.94610 0.93906 0.89384 1.59240 1.14954 1.09416 1.53154 1.20321 0.97903 0.96645 0.92781 1.20999 0.91848 1.46657 0.96949 0.90638 1.24978 0.94717 0.94389 0.98896 1.69899 1.10092 1.45935 1.27555 0.86829 0.80579 0.78961 0.83281 1.20270 1.21223 1.18981 1.20750 0.94168 0.95958 1.00651 0.87433 0.89733 0.89744 0.85320 0.84770 0.83059 0.85964 0.96005 0.96830 0.92556 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.15 101.05 0.92 -0.23 16 2 S -0.11 -1.29 22.56 -107.50 -2.43 -3.72 16 3 C -0.07 -1.04 6.11 -39.04 -0.24 -1.28 16 4 C -0.14 -1.86 9.15 -39.33 -0.36 -2.22 16 5 C -0.01 -0.20 6.32 -39.53 -0.25 -0.45 16 6 Cl -0.08 -0.97 28.95 -51.86 -1.50 -2.47 16 7 C -0.10 -1.60 9.08 -39.50 -0.36 -1.96 16 8 C -0.02 -0.34 4.95 -104.66 -0.52 -0.86 16 9 C 0.14 2.55 2.99 -68.86 -0.21 2.34 16 10 H 0.09 1.70 8.00 -51.93 -0.42 1.29 16 11 N -0.84 -14.77 9.02 -5.65 -0.05 -14.82 16 12 C -0.04 -0.85 3.67 -27.88 -0.10 -0.95 16 13 C -0.53 -14.01 9.10 -34.44 -0.31 -14.32 16 14 H 0.08 2.13 7.39 -52.49 -0.39 1.74 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -26.67 13.96 55.43 0.77 -25.89 16 17 Si 0.88 21.27 27.47 -169.99 -4.67 16.61 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 21 C -0.09 -1.43 9.41 -39.36 -0.37 -1.80 16 22 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.61 7.75 -51.93 -0.40 0.21 16 24 H 0.08 0.63 7.74 -51.92 -0.40 0.23 16 25 H 0.13 1.41 5.88 -52.49 -0.31 1.10 16 26 H 0.13 2.02 6.65 -52.49 -0.35 1.67 16 27 H 0.35 6.60 7.90 -39.29 -0.31 6.29 16 28 H 0.33 5.42 7.34 -39.29 -0.29 5.13 16 29 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 30 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.13 2.01 8.04 -52.48 -0.42 1.58 16 LS Contribution 296.03 15.07 4.46 4.46 Total: -1.00 -28.78 296.03 -8.94 -37.72 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -3.64 Total: 7.91 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.89 Total: -19.79 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.72 Total: -40.72 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.43 Total: -3.72 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.78 -8.94 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.207 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds