Wall clock time and date at job start Mon Mar 30 2020 07:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76198 * 103.00125 * 2 1 4 4 C 1.38975 * 120.07091 * 0.02562 * 3 2 1 5 5 C 1.38182 * 119.90488 * 179.97438 * 4 3 2 6 6 Cl 1.73596 * 119.97450 * 179.97438 * 5 4 3 7 7 C 1.38444 * 120.05153 * 359.97308 * 5 4 3 8 8 C 1.38259 * 120.15140 * 0.04690 * 7 5 4 9 9 C 1.50698 * 119.95574 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.46965 * 159.97994 * 9 8 7 11 11 N 1.46900 * 109.47002 * 39.97696 * 9 8 7 12 12 C 1.53004 * 109.47156 * 279.97739 * 9 8 7 13 13 C 1.50695 * 109.47055 * 184.99991 * 12 9 8 14 14 H 1.08002 * 120.00197 * 0.02562 * 13 12 9 15 15 C 1.37877 * 119.99918 * 179.97438 * 13 12 9 16 16 N 1.31515 * 120.00167 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99959 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47190 * 89.99535 * 17 15 13 19 19 H 1.48504 * 109.46993 * 209.99671 * 17 15 13 20 20 H 1.48502 * 109.47057 * 329.99863 * 17 15 13 21 21 C 1.38113 * 120.08936 * 359.95448 * 8 7 5 22 22 H 1.08996 * 109.46949 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47014 * 300.00170 * 1 2 3 24 24 H 1.09003 * 109.47151 * 59.99771 * 1 2 3 25 25 H 1.08000 * 120.04890 * 359.69668 * 4 3 2 26 26 H 1.07996 * 119.92482 * 180.02562 * 7 5 4 27 27 H 1.00903 * 110.99934 * 176.04791 * 11 9 8 28 28 H 1.00900 * 110.99919 * 299.99808 * 11 9 8 29 29 H 1.09001 * 109.46549 * 305.00229 * 12 9 8 30 30 H 1.09000 * 109.46669 * 64.99702 * 12 9 8 31 31 H 0.96997 * 120.00158 * 180.02562 * 16 15 13 32 32 H 1.08007 * 120.02663 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1952 2.6659 0.0005 5 6 1.5100 4.0114 0.0011 6 17 0.2434 5.1984 0.0011 7 6 2.8348 4.4135 0.0016 8 6 3.8465 3.4712 0.0007 9 6 5.2870 3.9138 0.0007 10 1 5.9180 3.0972 0.3518 11 7 5.4436 5.0714 0.8914 12 6 5.7009 4.3036 -1.4198 13 6 7.1722 4.6284 -1.4431 14 1 7.7541 4.5630 -0.5356 15 6 7.7758 5.0082 -2.6231 16 7 9.0597 5.2922 -2.6434 17 14 6.7694 5.1207 -4.1928 18 1 6.2119 6.4905 -4.3263 19 1 7.6383 4.8240 -5.3601 20 1 5.6582 4.1370 -4.1400 21 6 3.5388 2.1248 0.0001 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.1618 2.3523 -0.0040 26 1 3.0785 5.4656 0.0025 27 1 6.4118 5.3474 0.9590 28 1 4.8683 5.8424 0.5869 29 1 5.5013 3.4732 -2.0971 30 1 5.1309 5.1767 -1.7375 31 1 9.4842 5.5597 -3.4734 32 1 4.3300 1.3895 -0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260234820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:24 Heat of formation + Delta-G solvation = -12.639791 kcal Electronic energy + Delta-G solvation = -15977.064562 eV Core-core repulsion = 13281.152575 eV Total energy + Delta-G solvation = -2695.911987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62420 -37.78817 -36.93837 -34.56711 -31.92461 -31.85147 -30.47514 -29.67148 -26.32497 -24.09211 -23.50147 -21.49988 -19.31103 -18.35486 -17.43130 -17.09607 -16.47766 -16.13090 -15.75908 -15.24322 -15.00823 -14.88605 -14.82399 -14.29156 -14.16152 -13.94337 -13.44424 -13.09947 -13.01536 -12.67313 -12.61389 -12.35888 -12.09829 -12.05041 -11.78068 -11.34287 -11.24184 -10.81081 -10.62462 -9.87098 -9.41394 -8.43698 -8.32306 -6.36120 0.03166 0.11182 0.47599 1.00420 1.30661 1.34164 1.44237 1.49827 2.31521 2.45638 3.02849 3.54161 3.86477 3.98888 4.08248 4.24342 4.26232 4.26990 4.31139 4.54517 4.65289 4.70935 4.85225 4.99540 5.04331 5.17091 5.21355 5.52318 5.55357 5.65126 6.19546 6.31892 6.65254 6.71288 7.29086 8.83232 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.005372 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.237196 B = 5211.285235 C = 5819.522679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.131 6.131 3 C -0.075 4.075 4 C -0.132 4.132 5 C -0.017 4.017 6 Cl -0.060 7.060 7 C -0.112 4.112 8 C -0.037 4.037 9 C 0.145 3.855 10 H 0.075 0.925 11 N -0.830 5.830 12 C -0.031 4.031 13 C -0.524 4.524 14 H 0.046 0.954 15 C 0.015 3.985 16 N -0.943 5.943 17 Si 0.938 3.062 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.255 1.255 21 C -0.105 4.105 22 H 0.130 0.870 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.156 0.844 26 H 0.136 0.864 27 H 0.347 0.653 28 H 0.337 0.663 29 H 0.015 0.985 30 H 0.018 0.982 31 H 0.266 0.734 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.302 -7.141 4.942 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.111 5.889 3 C -0.188 4.188 4 C -0.157 4.157 5 C -0.046 4.046 6 Cl -0.031 7.031 7 C -0.134 4.134 8 C -0.040 4.040 9 C 0.033 3.967 10 H 0.094 0.906 11 N -0.359 5.359 12 C -0.070 4.070 13 C -0.562 4.562 14 H 0.065 0.935 15 C -0.183 4.183 16 N -0.584 5.584 17 Si 0.763 3.237 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.179 1.179 21 C -0.129 4.129 22 H 0.149 0.851 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.174 0.826 26 H 0.154 0.846 27 H 0.161 0.839 28 H 0.149 0.851 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.930 -8.537 5.417 23.244 hybrid contribution -0.113 1.988 -1.696 2.616 sum -21.043 -6.548 3.721 22.350 Atomic orbital electron populations 1.23839 0.91402 1.08844 1.06699 1.85654 1.10057 1.00796 1.92352 1.21686 0.95613 0.97813 1.03693 1.21156 0.99917 0.90379 1.04223 1.20768 0.89307 0.90199 1.04283 1.98359 1.50781 1.57083 1.96902 1.20927 0.90396 1.00732 1.01322 1.19837 0.95180 0.92799 0.96159 1.20123 0.90427 0.94495 0.91641 0.90646 1.59222 1.14490 1.09546 1.52676 1.20233 0.95107 0.96379 0.95262 1.21292 0.93831 1.45297 0.95769 0.93537 1.25821 0.95657 0.94434 1.02416 1.70035 1.11943 1.47871 1.28503 0.85835 0.79242 0.79490 0.79158 1.19286 1.21079 1.17883 1.20823 0.95280 0.95522 1.01299 0.85150 0.88599 0.88825 0.82615 0.84625 0.83925 0.85051 0.96631 0.96390 0.92507 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.15 113.37 1.04 -0.61 16 2 S -0.13 -2.76 22.56 -56.49 -1.27 -4.03 16 3 C -0.08 -1.97 6.11 22.62 0.14 -1.83 16 4 C -0.13 -3.14 9.15 22.43 0.21 -2.93 16 5 C -0.02 -0.45 6.32 22.31 0.14 -0.31 16 6 Cl -0.06 -1.36 28.95 -2.72 -0.08 -1.44 16 7 C -0.11 -3.38 9.08 22.32 0.20 -3.18 16 8 C -0.04 -1.23 4.95 -19.89 -0.10 -1.33 16 9 C 0.15 5.53 2.99 44.17 0.13 5.66 16 10 H 0.08 3.02 8.00 -2.38 -0.02 3.00 16 11 N -0.83 -29.51 9.02 -171.79 -1.55 -31.06 16 12 C -0.03 -1.38 3.67 29.85 0.11 -1.28 16 13 C -0.52 -28.47 9.10 25.60 0.23 -28.24 16 14 H 0.05 2.74 7.39 -2.91 -0.02 2.71 16 15 C 0.01 0.83 5.47 84.65 0.46 1.29 16 16 N -0.94 -57.46 13.96 21.45 0.30 -57.16 16 17 Si 0.94 43.82 27.47 68.60 1.88 45.70 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 21 C -0.11 -3.23 9.41 22.41 0.21 -3.02 16 22 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.10 0.97 7.75 -2.39 -0.02 0.95 16 24 H 0.09 1.00 7.74 -2.39 -0.02 0.98 16 25 H 0.16 2.77 5.88 -2.91 -0.02 2.76 16 26 H 0.14 3.92 6.65 -2.91 -0.02 3.90 16 27 H 0.35 13.28 7.90 -89.69 -0.71 12.58 16 28 H 0.34 11.01 7.34 -89.69 -0.66 10.35 16 29 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 30 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 31 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.13 3.99 8.04 -2.91 -0.02 3.96 16 Total: -1.00 -61.96 296.03 1.79 -60.17 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.27 Total: 23.60 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: 2.77 Total: -35.79 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -1.25 Total: -88.21 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -1.27 Total: -4.03 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -61.96 1.79 -60.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.533 kcal (2) G-P(sol) polarization free energy of solvation -61.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds