Wall clock time and date at job start Mon Mar 30 2020 07:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76205 * 103.00018 * 2 1 4 4 C 1.38975 * 120.06962 * 0.02562 * 3 2 1 5 5 C 1.38182 * 119.90488 * 180.02562 * 4 3 2 6 6 Cl 1.73596 * 119.97466 * 179.97438 * 5 4 3 7 7 C 1.38445 * 120.05153 * 359.97438 * 5 4 3 8 8 C 1.38259 * 120.15121 * 359.97438 * 7 5 4 9 9 C 1.50699 * 119.95555 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.46836 * 200.02220 * 9 8 7 11 11 N 1.46898 * 109.47011 * 320.02062 * 9 8 7 12 12 C 1.53001 * 109.47186 * 80.02208 * 9 8 7 13 13 C 1.50694 * 109.47114 * 174.99745 * 12 9 8 14 14 H 1.07999 * 120.00076 * 0.02562 * 13 12 9 15 15 C 1.37874 * 120.00050 * 179.97438 * 13 12 9 16 16 N 1.31515 * 120.00152 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00007 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47096 * 89.99805 * 17 15 13 19 19 H 1.48503 * 109.47168 * 209.99837 * 17 15 13 20 20 H 1.48496 * 109.47076 * 329.99971 * 17 15 13 21 21 C 1.38113 * 120.08955 * 0.02562 * 8 7 5 22 22 H 1.09002 * 109.47050 * 59.99960 * 1 2 3 23 23 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47383 * 300.00249 * 1 2 3 25 25 H 1.08000 * 120.04890 * 359.74181 * 4 3 2 26 26 H 1.07996 * 119.92497 * 180.02562 * 7 5 4 27 27 H 1.00908 * 110.99651 * 60.00396 * 11 9 8 28 28 H 1.00901 * 111.00241 * 183.95118 * 11 9 8 29 29 H 1.08997 * 109.47390 * 295.00173 * 12 9 8 30 30 H 1.09002 * 109.46851 * 54.99899 * 12 9 8 31 31 H 0.96999 * 119.99987 * 180.02562 * 16 15 13 32 32 H 1.08007 * 120.02663 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1951 2.6659 0.0005 5 6 1.5098 4.0114 0.0000 6 17 0.2431 5.1984 0.0000 7 6 2.8346 4.4136 -0.0005 8 6 3.8464 3.4713 0.0000 9 6 5.2869 3.9140 -0.0012 10 1 5.9176 3.0973 -0.3525 11 7 5.4427 5.0713 -0.8924 12 6 5.7017 4.3043 1.4189 13 6 7.1730 4.6291 1.4411 14 1 7.7541 4.5642 0.5330 15 6 7.7771 5.0103 2.6203 16 7 9.0611 5.2943 2.6396 17 14 6.7719 5.1233 4.1907 18 1 6.7976 3.8136 4.8903 19 1 7.3498 6.1678 5.0742 20 1 5.3694 5.4784 3.8562 21 6 3.5387 2.1249 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.1617 2.3523 -0.0033 26 1 3.0782 5.4657 -0.0005 27 1 4.8676 5.8424 -0.5876 28 1 6.4108 5.3474 -0.9607 29 1 5.1319 5.1774 1.7368 30 1 5.5026 3.4741 2.0966 31 1 9.4862 5.5621 3.4693 32 1 4.3299 1.3897 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260234822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:27 Heat of formation + Delta-G solvation = 4.470144 kcal Electronic energy + Delta-G solvation = -15976.308992 eV Core-core repulsion = 13281.138947 eV Total energy + Delta-G solvation = -2695.170045 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.049 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.43411 -36.63325 -35.53185 -32.54872 -30.77382 -30.70240 -28.94638 -28.63491 -24.74383 -22.86147 -22.02530 -20.01174 -17.70513 -16.81649 -16.36513 -15.82945 -14.99438 -14.69673 -14.43159 -14.08633 -13.94552 -13.62987 -13.40782 -13.11593 -12.81255 -12.42542 -12.12299 -11.75688 -11.71959 -11.51787 -11.17580 -10.98131 -10.62159 -10.43945 -10.28075 -9.85996 -9.51314 -9.33022 -8.71087 -8.64302 -7.92243 -7.48673 -6.16823 -4.17193 1.16823 1.25721 1.36906 2.00176 2.37656 3.23372 3.31561 3.34817 3.62722 4.34803 4.73427 4.80834 4.81801 5.02260 5.14471 5.16686 5.36653 5.40852 5.45615 5.63752 5.71864 6.03556 6.17921 6.21330 6.38118 6.66773 6.77127 6.96104 7.15085 7.61094 7.82174 8.11388 8.36390 8.85168 9.45056 10.95632 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.005371 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.763437 B = 5212.339673 C = 5820.773095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.111 6.111 3 C -0.074 4.074 4 C -0.140 4.140 5 C -0.014 4.014 6 Cl -0.077 7.077 7 C -0.102 4.102 8 C -0.020 4.020 9 C 0.135 3.865 10 H 0.088 0.912 11 N -0.838 5.838 12 C -0.038 4.038 13 C -0.527 4.527 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.092 4.092 22 H 0.084 0.916 23 H 0.107 0.893 24 H 0.084 0.916 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.329 0.671 28 H 0.355 0.645 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.265 0.735 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.083 -6.460 -5.284 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.131 5.869 3 C -0.187 4.187 4 C -0.165 4.165 5 C -0.042 4.042 6 Cl -0.048 7.048 7 C -0.123 4.123 8 C -0.023 4.023 9 C 0.024 3.976 10 H 0.106 0.894 11 N -0.367 5.367 12 C -0.077 4.077 13 C -0.565 4.565 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.115 4.115 22 H 0.103 0.897 23 H 0.126 0.874 24 H 0.103 0.897 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.140 0.860 28 H 0.169 0.831 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.685 -7.843 -5.747 20.182 hybrid contribution -1.029 1.818 1.901 2.824 sum -18.714 -6.026 -3.846 20.033 Atomic orbital electron populations 1.23679 0.95179 1.06978 1.05719 1.85526 1.05919 1.02658 1.92796 1.21514 0.96167 0.96161 1.04832 1.20836 0.98759 0.90978 1.05895 1.20697 0.89387 0.89333 1.04800 1.98353 1.51804 1.57611 1.97013 1.20897 0.89812 1.00884 1.00692 1.20102 0.96474 0.91899 0.93829 1.20372 0.88741 0.94610 0.93919 0.89406 1.59246 1.14977 1.09433 1.53081 1.20323 0.98022 0.96647 0.92670 1.20997 0.91833 1.46641 0.96983 0.90636 1.24977 0.94701 0.94394 0.98909 1.69900 1.10035 1.45984 1.27562 0.86825 0.80980 0.78180 0.83599 1.20166 1.21285 1.19091 1.20750 0.94169 0.95951 1.00673 0.89737 0.87433 0.89740 0.85320 0.84777 0.85957 0.83062 0.96370 0.96455 0.92556 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.15 101.05 0.92 -0.23 16 2 S -0.11 -1.29 22.56 -107.50 -2.43 -3.72 16 3 C -0.07 -1.04 6.11 -39.04 -0.24 -1.28 16 4 C -0.14 -1.86 9.15 -39.33 -0.36 -2.22 16 5 C -0.01 -0.20 6.32 -39.53 -0.25 -0.45 16 6 Cl -0.08 -0.97 28.95 -51.86 -1.50 -2.47 16 7 C -0.10 -1.60 9.07 -39.50 -0.36 -1.96 16 8 C -0.02 -0.34 4.95 -104.66 -0.52 -0.86 16 9 C 0.14 2.55 2.99 -68.87 -0.21 2.34 16 10 H 0.09 1.70 8.00 -51.93 -0.42 1.28 16 11 N -0.84 -14.78 9.02 -5.65 -0.05 -14.83 16 12 C -0.04 -0.85 3.67 -27.89 -0.10 -0.95 16 13 C -0.53 -14.01 9.10 -34.44 -0.31 -14.32 16 14 H 0.08 2.13 7.39 -52.49 -0.39 1.74 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -26.67 13.96 55.43 0.77 -25.89 16 17 Si 0.88 21.29 27.47 -169.99 -4.67 16.63 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 21 C -0.09 -1.43 9.41 -39.36 -0.37 -1.80 16 22 H 0.08 0.61 7.75 -51.92 -0.40 0.21 16 23 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 24 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 25 H 0.13 1.41 5.88 -52.49 -0.31 1.10 16 26 H 0.13 2.03 6.66 -52.49 -0.35 1.68 16 27 H 0.33 5.44 7.34 -39.29 -0.29 5.15 16 28 H 0.35 6.60 7.90 -39.29 -0.31 6.29 16 29 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 30 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.13 2.00 8.03 -52.48 -0.42 1.58 16 LS Contribution 296.03 15.07 4.46 4.46 Total: -1.00 -28.77 296.03 -8.94 -37.72 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -3.64 Total: 7.91 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.89 Total: -19.79 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.72 Total: -40.73 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.43 Total: -3.72 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.77 -8.94 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.185 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds