Wall clock time and date at job start Mon Mar 30 2020 07:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38299 * 119.84767 * 2 1 4 4 C 1.38094 * 120.16767 * 180.02562 * 3 2 1 5 5 Cl 1.73605 * 120.07089 * 179.97438 * 4 3 2 6 6 C 1.39795 * 119.85789 * 0.27573 * 4 3 2 7 7 C 1.47657 * 120.14593 * 179.70273 * 6 4 3 8 8 O 1.21596 * 120.00197 * 317.49034 * 7 6 4 9 9 N 1.34780 * 120.00146 * 137.49425 * 7 6 4 10 10 C 1.46500 * 120.00309 * 185.46062 * 9 7 6 11 11 C 1.36881 * 119.99525 * 5.45928 * 9 7 6 12 12 H 1.07994 * 120.00486 * 319.32004 * 11 9 7 13 13 C 1.39043 * 119.99711 * 139.32272 * 11 9 7 14 14 N 1.31366 * 120.00217 * 162.41445 * 13 11 9 15 15 Si 1.86803 * 120.00021 * 342.40710 * 13 11 9 16 16 H 1.48497 * 109.46732 * 92.64380 * 15 13 11 17 17 H 1.48499 * 109.47281 * 212.64167 * 15 13 11 18 18 H 1.48497 * 109.47053 * 332.64617 * 15 13 11 19 19 C 1.39633 * 119.70017 * 359.44295 * 6 4 3 20 20 C 1.38143 * 119.83313 * 0.56016 * 19 6 4 21 21 F 1.35105 * 119.93341 * 179.69629 * 20 19 6 22 22 H 1.09006 * 109.46458 * 90.00289 * 1 2 3 23 23 H 1.08995 * 109.47304 * 210.00264 * 1 2 3 24 24 H 1.09004 * 109.47563 * 330.01192 * 1 2 3 25 25 H 1.08000 * 119.91633 * 0.03568 * 3 2 1 26 26 H 1.09001 * 109.46964 * 84.56094 * 10 9 7 27 27 H 1.09000 * 109.47026 * 204.55950 * 10 9 7 28 28 H 1.08998 * 109.46635 * 324.56353 * 10 9 7 29 29 H 0.96996 * 120.00484 * 179.97438 * 14 13 11 30 30 H 1.08000 * 120.08232 * 180.29474 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1953 1.1995 0.0000 4 6 3.5762 1.2073 -0.0005 5 17 4.4376 2.7145 -0.0012 6 6 4.2789 -0.0012 -0.0069 7 6 5.7555 -0.0004 -0.0141 8 8 6.3595 0.7780 -0.7268 9 7 6.4337 -0.8624 0.7691 10 6 7.8941 -0.7823 0.8531 11 6 5.7580 -1.8126 1.4861 12 1 4.8290 -1.5605 1.9756 13 6 6.2677 -3.1025 1.5841 14 7 5.8342 -3.9104 2.5249 15 14 7.5688 -3.6868 0.3778 16 1 8.9179 -3.4376 0.9458 17 1 7.3969 -5.1409 0.1302 18 1 7.4258 -2.9465 -0.9015 19 6 3.5782 -1.2090 -0.0009 20 6 2.1968 -1.2021 -0.0004 21 9 1.5168 -2.3695 -0.0008 22 1 -0.3632 -0.0001 -1.0278 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8901 0.5137 25 1 1.6514 2.1326 0.0006 26 1 8.1749 -0.0372 1.5975 27 1 8.2952 -1.7538 1.1422 28 1 8.2987 -0.4964 -0.1178 29 1 6.1895 -4.8103 2.5931 30 1 4.1149 -2.1462 -0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260323165.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:49 Heat of formation + Delta-G solvation = -64.864616 kcal Electronic energy + Delta-G solvation = -18750.221111 eV Core-core repulsion = 15485.831310 eV Total energy + Delta-G solvation = -3264.389802 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.052 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.94088 -41.25060 -39.43348 -37.45650 -36.85149 -34.02859 -33.95016 -31.42294 -29.38747 -27.77658 -26.66042 -24.00639 -23.17659 -21.23595 -19.80971 -18.43974 -17.94521 -17.42308 -16.96635 -16.88448 -16.65865 -16.14689 -15.67055 -14.93496 -14.65185 -14.53415 -14.43388 -14.32494 -14.05495 -13.68157 -13.57564 -13.27472 -12.94829 -12.80844 -12.49038 -12.29587 -11.96942 -11.93352 -11.89765 -11.19586 -10.62354 -9.97598 -9.79217 -9.51914 -8.55536 -6.22300 -0.30466 0.02619 1.08554 1.17193 1.30444 1.41156 1.74062 2.13162 2.35601 2.55012 2.88588 3.19265 3.61254 3.74843 3.94165 4.11381 4.27394 4.38908 4.51962 4.66784 4.73777 4.80156 4.84701 4.88555 5.06841 5.13869 5.23626 5.33565 5.70225 5.97235 6.14667 6.84184 7.24813 7.61563 8.56783 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.008915 C = 0.006355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.709400 B = 3139.861818 C = 4405.108070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.015 4.015 5 Cl -0.051 7.051 6 C -0.098 4.098 7 C 0.514 3.486 8 O -0.590 6.590 9 N -0.470 5.470 10 C 0.069 3.931 11 C -0.347 4.347 12 H 0.083 0.917 13 C 0.033 3.967 14 N -0.890 5.890 15 Si 0.928 3.072 16 H -0.252 1.252 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.091 4.091 20 C 0.074 3.926 21 F -0.137 7.137 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.182 0.818 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.283 0.717 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 6.822 -4.057 11.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.107 4.107 4 C -0.044 4.044 5 Cl -0.021 7.021 6 C -0.102 4.102 7 C 0.304 3.696 8 O -0.475 6.475 9 N -0.191 5.191 10 C -0.073 4.073 11 C -0.474 4.474 12 H 0.101 0.899 13 C -0.172 4.172 14 N -0.526 5.526 15 Si 0.753 3.247 16 H -0.177 1.177 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.111 4.111 20 C 0.054 3.946 21 F -0.116 7.116 22 H 0.114 0.886 23 H 0.090 0.910 24 H 0.120 0.880 25 H 0.199 0.801 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.021 7.084 -4.273 11.523 hybrid contribution 0.963 -0.961 -0.096 1.364 sum -7.059 6.123 -4.369 10.315 Atomic orbital electron populations 1.20881 0.86385 1.04885 1.04514 1.20327 0.99180 0.89880 0.99123 1.20995 0.89935 0.99544 1.00217 1.21133 0.93196 0.86394 1.03630 1.98362 1.77604 1.29581 1.96585 1.19517 0.93786 0.92547 1.04328 1.18355 0.87354 0.83300 0.80626 1.90655 1.70174 1.43610 1.43068 1.43628 1.05997 1.29879 1.39549 1.21946 0.81251 1.01853 1.02209 1.18914 1.09108 0.89646 1.29747 0.89924 1.25870 0.99134 0.95624 0.96586 1.69754 1.43983 1.08867 1.29950 0.86135 0.80343 0.77626 0.80583 1.17707 1.20930 1.19407 1.21538 0.92839 0.99249 0.97433 1.17595 0.89177 0.82092 1.05717 1.91468 1.79564 1.46478 1.94082 0.88617 0.91013 0.87974 0.80061 0.91542 0.91674 0.91250 0.90730 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.82 71.23 0.70 -1.25 16 2 C -0.08 -2.25 5.89 -19.77 -0.12 -2.37 16 3 C -0.09 -2.37 9.46 22.25 0.21 -2.16 16 4 C -0.02 -0.55 6.34 22.61 0.14 -0.40 16 5 Cl -0.05 -1.74 26.92 -2.72 -0.07 -1.81 16 6 C -0.10 -4.15 5.28 -20.08 -0.11 -4.26 16 7 C 0.51 24.52 6.92 86.73 0.60 25.12 16 8 O -0.59 -29.38 15.09 -4.02 -0.06 -29.44 16 9 N -0.47 -22.81 2.53 -662.40 -1.68 -24.49 16 10 C 0.07 2.97 8.97 127.77 1.15 4.12 16 11 C -0.35 -17.90 6.90 84.10 0.58 -17.32 16 12 H 0.08 4.61 6.71 -2.91 -0.02 4.59 16 13 C 0.03 1.71 5.33 84.96 0.45 2.17 16 14 N -0.89 -48.11 13.95 21.68 0.30 -47.81 16 15 Si 0.93 40.76 24.96 68.60 1.71 42.47 16 16 H -0.25 -10.19 6.63 99.48 0.66 -9.53 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 C -0.09 -3.75 7.79 22.58 0.18 -3.57 16 20 C 0.07 2.55 7.23 22.33 0.16 2.71 16 21 F -0.14 -4.76 16.46 44.97 0.74 -4.02 16 22 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.07 1.33 7.63 -2.39 -0.02 1.32 16 24 H 0.10 1.26 8.08 -2.38 -0.02 1.24 16 25 H 0.18 3.34 8.06 -2.91 -0.02 3.31 16 26 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.07 2.74 3.55 -2.39 -0.01 2.73 16 28 H 0.07 2.86 7.52 -2.39 -0.02 2.84 16 29 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.14 6.52 6.29 -2.91 -0.02 6.50 16 Total: -1.00 -60.93 273.12 6.03 -54.90 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.14 Total: 7.41 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 3.95 Total: 2.78 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.38 Total: -72.30 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.06 Total: -29.44 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.74 Total: -4.02 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.71 Total: 42.47 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Total: -60.93 6.03 -54.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323165.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.960 kcal (2) G-P(sol) polarization free energy of solvation -60.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds