Wall clock time and date at job start Mon Mar 30 2020 07:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36005 * 116.99751 * 2 1 4 4 C 1.38675 * 120.00763 * 359.72309 * 3 2 1 5 5 C 1.38135 * 120.01591 * 179.74241 * 4 3 2 6 6 C 1.38716 * 120.01848 * 0.51424 * 5 4 3 7 7 O 1.35983 * 119.99523 * 179.74547 * 6 5 4 8 8 C 1.42899 * 116.99892 * 0.02562 * 7 6 5 9 9 C 1.38672 * 120.00912 * 359.76120 * 6 5 4 10 10 C 1.50702 * 120.00885 * 180.02562 * 9 6 5 11 11 H 1.08995 * 109.47571 * 193.30947 * 10 9 6 12 12 N 1.46898 * 109.46891 * 313.31228 * 10 9 6 13 13 C 1.50701 * 109.46987 * 73.30706 * 10 9 6 14 14 H 1.07997 * 120.00166 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99818 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99903 * 179.97438 * 15 13 10 17 17 Si 1.86803 * 120.00021 * 0.02562 * 15 13 10 18 18 H 1.48496 * 109.47183 * 89.99806 * 17 15 13 19 19 H 1.48505 * 109.46627 * 209.99733 * 17 15 13 20 20 H 1.48499 * 109.46714 * 329.99242 * 17 15 13 21 21 C 1.38238 * 119.98862 * 359.97438 * 9 6 5 22 22 Cl 1.73603 * 120.01278 * 179.97438 * 21 9 6 23 23 H 1.08997 * 109.47771 * 299.99871 * 1 2 3 24 24 H 1.09008 * 109.46786 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47269 * 60.00560 * 1 2 3 26 26 H 1.08005 * 119.98955 * 359.97438 * 4 3 2 27 27 H 1.07994 * 119.99128 * 180.22988 * 5 4 3 28 28 H 1.09005 * 109.46891 * 180.02562 * 8 7 6 29 29 H 1.09002 * 109.47503 * 299.99939 * 8 7 6 30 30 H 1.09002 * 109.47472 * 60.00091 * 8 7 6 31 31 H 1.00903 * 111.00178 * 307.34544 * 12 10 9 32 32 H 1.00903 * 111.00616 * 71.29916 * 12 10 9 33 33 H 0.97005 * 120.00158 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2912 2.3749 -0.0058 5 6 1.9181 3.6059 -0.0004 6 6 3.3033 3.6792 0.0000 7 8 3.9199 4.8912 0.0001 8 6 3.0792 6.0467 0.0002 9 6 4.0594 2.5167 0.0000 10 6 5.5643 2.5964 0.0011 11 1 5.9802 1.6171 -0.2356 12 7 6.0036 3.5714 -1.0060 13 6 6.0434 3.0300 1.3625 14 1 5.3296 3.2276 2.1485 15 6 7.3930 3.1733 1.6050 16 7 7.8112 3.5521 2.7930 17 14 8.6277 2.8308 0.2456 18 1 8.8847 4.0794 -0.5158 19 1 9.8979 2.3442 0.8418 20 1 8.0821 1.7962 -0.6693 21 6 3.4324 1.2847 0.0002 22 17 4.3783 -0.1710 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5137 -0.8900 26 1 0.2127 2.3183 -0.0107 27 1 1.3296 4.5114 -0.0012 28 1 3.6965 6.9451 -0.0002 29 1 2.4498 6.0384 -0.8897 30 1 2.4500 6.0382 0.8903 31 1 5.5961 3.3696 -1.9067 32 1 5.7891 4.5135 -0.7151 33 1 8.7607 3.6534 2.9635 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:58 Heat of formation + Delta-G solvation = -70.516852 kcal Electronic energy + Delta-G solvation = -19244.089452 eV Core-core repulsion = 16102.914856 eV Total energy + Delta-G solvation = -3141.174596 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.56122 -39.94940 -38.04537 -36.99969 -36.19454 -33.90070 -31.49941 -30.40132 -28.56364 -27.90582 -27.69712 -24.44621 -23.15912 -21.79279 -19.10657 -19.01474 -18.47158 -17.84981 -16.80126 -16.62657 -16.35886 -16.02610 -15.87200 -15.46281 -15.21508 -14.98356 -14.26241 -14.13331 -13.72454 -13.59463 -13.23939 -12.71578 -12.66347 -12.51704 -12.42519 -12.27025 -11.99683 -11.86717 -11.56813 -11.26941 -11.19911 -10.69036 -9.74111 -9.29497 -8.65412 -8.20766 -6.30258 0.10436 0.40223 1.21457 1.50482 1.56889 1.72946 2.29570 2.54952 2.58542 2.61094 3.15712 3.72723 3.90769 4.08314 4.23454 4.34570 4.42300 4.45623 4.46766 4.48713 4.66125 4.72202 4.78378 4.81852 5.03719 5.16137 5.28754 5.46852 5.67046 6.18538 6.33067 6.51184 6.59294 6.82509 7.08170 7.42820 8.92759 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.008255 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.096471 B = 3391.147366 C = 4357.059164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.093 3.907 4 C -0.161 4.161 5 C -0.161 4.161 6 C 0.099 3.901 7 O -0.322 6.322 8 C 0.018 3.982 9 C -0.097 4.097 10 C 0.229 3.771 11 H 0.048 0.952 12 N -0.838 5.838 13 C -0.493 4.493 14 H 0.026 0.974 15 C 0.029 3.971 16 N -0.947 5.947 17 Si 0.988 3.012 18 H -0.274 1.274 19 H -0.322 1.322 20 H -0.263 1.263 21 C -0.054 4.054 22 Cl -0.064 7.064 23 H 0.066 0.934 24 H 0.118 0.882 25 H 0.071 0.929 26 H 0.175 0.825 27 H 0.168 0.832 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.326 0.674 32 H 0.348 0.652 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.184 -0.379 -9.359 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.047 3.953 4 C -0.180 4.180 5 C -0.179 4.179 6 C 0.053 3.947 7 O -0.236 6.236 8 C -0.077 4.077 9 C -0.100 4.100 10 C 0.119 3.881 11 H 0.066 0.934 12 N -0.371 5.371 13 C -0.532 4.532 14 H 0.045 0.955 15 C -0.169 4.169 16 N -0.588 5.588 17 Si 0.818 3.182 18 H -0.200 1.200 19 H -0.252 1.252 20 H -0.188 1.188 21 C -0.082 4.082 22 Cl -0.035 7.035 23 H 0.084 0.916 24 H 0.136 0.864 25 H 0.090 0.910 26 H 0.193 0.807 27 H 0.185 0.815 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.138 0.862 32 H 0.165 0.835 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.951 -0.865 -9.123 19.270 hybrid contribution -0.385 0.206 -0.003 0.437 sum -17.336 -0.658 -9.126 19.602 Atomic orbital electron populations 1.23398 0.76134 1.05692 1.02519 1.86138 1.23652 1.25448 1.88982 1.18601 0.89555 0.86406 1.00780 1.21218 1.01345 0.89822 1.05627 1.21419 0.92037 1.00032 1.04440 1.18653 0.91200 0.85143 0.99735 1.86149 1.36330 1.12453 1.88667 1.23333 0.96274 0.85958 1.02129 1.20177 0.99191 0.89578 1.01095 1.18340 0.84807 0.93819 0.91170 0.93383 1.59254 1.64999 1.07883 1.04920 1.20781 0.91834 1.45691 0.94882 0.95542 1.25711 1.00494 0.93424 0.97303 1.70070 1.15564 1.49319 1.23809 0.85026 0.75236 0.79385 0.78566 1.19970 1.25192 1.18810 1.19934 0.89373 0.87688 1.11204 1.98313 1.72785 1.35316 1.97056 0.91587 0.86389 0.91007 0.80750 0.81458 0.87299 0.90612 0.92237 0.86204 0.83495 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.28 9.95 -93.61 -0.93 -10.21 16 3 C 0.09 2.97 6.68 22.51 0.15 3.12 16 4 C -0.16 -4.07 9.03 22.35 0.20 -3.87 16 5 C -0.16 -4.34 9.03 22.36 0.20 -4.13 16 6 C 0.10 3.57 6.44 22.49 0.14 3.72 16 7 O -0.32 -11.46 7.40 -93.35 -0.69 -12.15 16 8 C 0.02 0.40 9.81 113.37 1.11 1.51 16 9 C -0.10 -4.12 4.79 -19.76 -0.09 -4.21 16 10 C 0.23 11.21 2.09 43.42 0.09 11.31 16 11 H 0.05 2.49 5.38 -2.39 -0.01 2.48 16 12 N -0.84 -37.04 6.58 -174.96 -1.15 -38.19 16 13 C -0.49 -29.22 8.91 25.60 0.23 -28.99 16 14 H 0.03 1.75 7.98 -2.91 -0.02 1.73 16 15 C 0.03 1.78 5.47 84.65 0.46 2.24 16 16 N -0.95 -61.29 13.96 21.45 0.30 -61.00 16 17 Si 0.99 51.53 26.03 68.60 1.79 53.31 16 18 H -0.27 -13.85 7.11 99.48 0.71 -13.15 16 19 H -0.32 -16.79 7.11 99.48 0.71 -16.08 16 20 H -0.26 -13.34 6.54 99.48 0.65 -12.69 16 21 C -0.05 -2.14 6.33 22.40 0.14 -2.00 16 22 Cl -0.06 -2.56 26.60 -2.72 -0.07 -2.64 16 23 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 24 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16 26 H 0.18 2.80 6.29 -2.91 -0.02 2.78 16 27 H 0.17 3.15 6.29 -2.91 -0.02 3.13 16 28 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.08 1.27 7.66 -2.39 -0.02 1.25 16 30 H 0.06 1.24 7.66 -2.39 -0.02 1.22 16 31 H 0.33 12.42 8.94 -89.69 -0.80 11.62 16 32 H 0.35 15.37 6.41 -89.69 -0.58 14.79 16 33 H 0.26 16.07 8.31 -92.70 -0.77 15.30 16 Total: -1.00 -75.89 286.21 2.72 -73.16 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -0.27 Total: 17.64 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 3.75 Total: -19.94 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -0.85 Total: -99.18 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -1.62 Total: -22.37 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 1.79 Total: 53.31 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.07 Total: -2.64 kcal Total: -75.89 2.72 -73.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.648 kcal (2) G-P(sol) polarization free energy of solvation -75.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds