Wall clock time and date at job start Mon Mar 30 2020 07:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00068 * 2 1 4 4 H 1.48492 * 109.47738 * 240.00201 * 3 2 1 5 5 H 1.48502 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46847 * 120.00173 * 3 2 1 7 7 C 1.37879 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.33635 * 122.75227 * 84.97386 * 10 9 7 12 12 S 1.76203 * 107.92299 * 179.97438 * 11 10 9 13 13 C 1.70968 * 90.28399 * 0.02562 * 12 11 10 14 14 C 1.50701 * 124.91793 * 179.97438 * 13 12 11 15 15 H 1.09002 * 112.51051 * 170.35513 * 14 13 12 16 16 C 1.52884 * 113.21937 * 300.23412 * 14 13 12 17 17 C 1.51428 * 84.73248 * 115.23170 * 16 14 13 18 18 C 1.38951 * 145.52688 * 180.02562 * 17 16 14 19 19 C 1.37968 * 120.32044 * 179.97438 * 18 17 16 20 20 C 1.38243 * 120.18046 * 359.97438 * 19 18 17 21 21 C 1.38177 * 119.74745 * 359.97438 * 20 19 18 22 22 C 1.38235 * 120.12209 * 0.02562 * 21 20 19 23 23 N 1.29034 * 110.16986 * 0.23954 * 13 12 11 24 24 H 0.96996 * 120.00092 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.46977 * 60.00343 * 9 7 2 26 26 H 1.09002 * 109.46641 * 300.00270 * 9 7 2 27 27 H 1.08003 * 126.03751 * 359.97359 * 11 10 9 28 28 H 1.08997 * 113.98823 * 229.18132 * 16 14 13 29 29 H 1.09000 * 113.98704 * 1.28700 * 16 14 13 30 30 H 1.08004 * 119.83683 * 359.97438 * 18 17 16 31 31 H 1.08004 * 119.91160 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.12882 * 180.02562 * 20 19 18 33 33 H 1.07991 * 119.93645 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.7751 -4.1301 1.1190 12 16 3.8514 -5.4509 0.6699 13 6 3.4626 -5.2184 -0.9787 14 6 4.0231 -6.0278 -2.1196 15 1 3.5174 -5.8244 -3.0636 16 6 5.5463 -5.9484 -2.2239 17 6 5.5059 -7.4275 -1.9022 18 6 6.2604 -8.5761 -1.6969 19 6 5.6408 -9.7732 -1.4027 20 6 4.2630 -9.8381 -1.3094 21 6 3.5078 -8.6987 -1.5115 22 6 4.1276 -7.4988 -1.8064 23 7 2.6240 -4.2459 -1.1052 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.5885 -3.7755 2.1220 28 1 5.9107 -5.7225 -3.2260 29 1 6.0122 -5.3390 -1.4495 30 1 7.3372 -8.5316 -1.7680 31 1 6.2337 -10.6619 -1.2439 32 1 3.7788 -10.7754 -1.0786 33 1 2.4313 -8.7460 -1.4398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302516777.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:27 Heat of formation + Delta-G solvation = 100.549145 kcal Electronic energy + Delta-G solvation = -17007.592396 eV Core-core repulsion = 14319.021500 eV Total energy + Delta-G solvation = -2688.570897 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.77020 -39.00327 -35.81894 -33.19560 -31.08091 -30.58636 -27.86659 -27.15881 -25.54662 -23.82940 -22.51177 -21.34556 -20.03800 -19.07580 -17.12470 -16.52908 -16.33805 -15.53916 -15.37580 -14.64335 -14.55013 -14.02290 -13.46488 -13.16899 -13.07586 -12.61892 -12.38209 -12.32129 -11.94725 -11.86067 -11.50026 -11.13306 -11.01368 -10.72932 -10.53057 -10.41764 -9.76407 -9.48630 -9.07399 -8.92882 -8.81021 -8.74781 -8.42811 -7.91451 -6.05198 -4.08429 1.17048 1.25234 1.32009 1.93325 2.35887 3.32324 3.35947 3.38350 3.57966 3.62207 4.00222 4.23835 4.44060 4.53732 4.65568 4.89947 4.99179 5.29487 5.33407 5.47268 5.49574 5.55093 5.68728 5.77256 5.95093 6.00195 6.05136 6.25314 6.33490 6.36128 6.62217 6.84856 7.02473 7.46897 7.55039 7.89895 8.27726 8.53694 8.93848 9.54412 11.05219 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.039621 B = 0.004024 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.532895 B = 6957.074472 C = 7147.737320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.084 3.916 10 C 0.110 3.890 11 C -0.261 4.261 12 S 0.067 5.933 13 C 0.046 3.954 14 C 0.038 3.962 15 H 0.120 0.880 16 C -0.067 4.067 17 C -0.120 4.120 18 C -0.100 4.100 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.080 4.080 22 C -0.122 4.122 23 N -0.452 5.452 24 H 0.263 0.737 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.172 0.828 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.896 -18.066 -2.165 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.045 3.955 10 C -0.020 4.020 11 C -0.399 4.399 12 S 0.320 5.680 13 C -0.232 4.232 14 C 0.016 3.984 15 H 0.138 0.862 16 C -0.104 4.104 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.135 4.135 20 C -0.137 4.137 21 C -0.098 4.098 22 C -0.123 4.123 23 N -0.166 5.166 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.190 0.810 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.189 -18.478 -2.122 21.705 hybrid contribution -0.197 1.602 0.107 1.618 sum 10.991 -16.876 -2.015 20.240 Atomic orbital electron populations 1.69936 1.06006 1.27033 1.50274 1.24971 0.94900 0.99205 0.95106 0.86559 0.79516 0.82677 0.78712 1.20143 1.21145 1.20180 1.20941 0.92917 0.89741 1.51337 0.92677 1.17998 0.91334 0.87276 0.98910 1.21226 0.98555 0.97156 0.85030 1.26790 1.05785 1.02781 1.04524 1.83552 1.45733 1.34297 1.04445 1.26381 1.00867 0.99198 0.96784 1.19577 0.95842 0.87137 0.95823 0.86216 1.21915 0.94051 0.90927 1.03550 1.22346 0.95071 0.95432 0.99180 1.20516 0.99633 0.91301 1.00352 1.20955 0.94822 0.97305 1.00393 1.21002 0.93978 0.97832 1.00892 1.20250 1.00119 0.90598 0.98836 1.21552 0.95937 0.94498 1.00286 1.66197 1.11201 1.06573 1.32668 0.92693 0.94295 0.94472 0.81031 0.87844 0.88302 0.86425 0.85815 0.85560 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.63 9.09 -34.44 -0.31 -14.94 16 8 H 0.05 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.08 2.26 5.39 -29.03 -0.16 2.10 16 10 C 0.11 2.55 5.93 -84.22 -0.50 2.05 16 11 C -0.26 -5.24 11.14 29.12 0.32 -4.92 16 12 S 0.07 1.12 22.70 -107.50 -2.44 -1.32 16 13 C 0.05 0.83 6.43 -13.45 -0.09 0.74 16 14 C 0.04 0.54 4.27 -96.59 -0.41 0.13 16 15 H 0.12 1.65 8.14 -51.93 -0.42 1.23 16 16 C -0.07 -0.78 7.97 -27.59 -0.22 -1.00 16 17 C -0.12 -1.42 7.32 -107.59 -0.79 -2.21 16 18 C -0.10 -1.03 10.05 -39.42 -0.40 -1.42 16 19 C -0.12 -1.09 10.03 -39.68 -0.40 -1.49 16 20 C -0.12 -1.17 10.06 -39.60 -0.40 -1.57 16 21 C -0.08 -0.94 10.04 -39.60 -0.40 -1.34 16 22 C -0.12 -1.59 6.65 -104.55 -0.69 -2.28 16 23 N -0.45 -9.94 10.53 -8.06 -0.08 -10.03 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.17 3.18 8.06 -52.48 -0.42 2.75 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.10 1.18 7.99 -51.93 -0.41 0.77 16 30 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 304.07 15.07 4.58 4.58 Total: -1.00 -31.53 304.07 -10.52 -42.05 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -3.76 Total: -1.64 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -4.53 Total: -24.53 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.65 Total: -35.87 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.44 Total: -1.32 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.53 -10.52 -42.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302516777.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.595 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds