Wall clock time and date at job start Mon Mar 30 2020 07:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00068 * 2 1 4 4 H 1.48492 * 109.47738 * 240.00201 * 3 2 1 5 5 H 1.48502 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46847 * 120.00173 * 3 2 1 7 7 C 1.37879 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.33635 * 122.75227 * 84.97386 * 10 9 7 12 12 S 1.76203 * 107.92299 * 179.97438 * 11 10 9 13 13 C 1.70968 * 90.28399 * 0.02562 * 12 11 10 14 14 C 1.50701 * 124.91793 * 179.97438 * 13 12 11 15 15 H 1.09002 * 112.51051 * 170.35513 * 14 13 12 16 16 C 1.52884 * 113.21937 * 300.23412 * 14 13 12 17 17 C 1.51428 * 84.73248 * 115.23170 * 16 14 13 18 18 C 1.38951 * 145.52688 * 180.02562 * 17 16 14 19 19 C 1.37968 * 120.32044 * 179.97438 * 18 17 16 20 20 C 1.38243 * 120.18046 * 359.97438 * 19 18 17 21 21 C 1.38177 * 119.74745 * 359.97438 * 20 19 18 22 22 C 1.38235 * 120.12209 * 0.02562 * 21 20 19 23 23 N 1.29034 * 110.16986 * 0.23954 * 13 12 11 24 24 H 0.96996 * 120.00092 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.46977 * 60.00343 * 9 7 2 26 26 H 1.09002 * 109.46641 * 300.00270 * 9 7 2 27 27 H 1.08003 * 126.03751 * 359.97359 * 11 10 9 28 28 H 1.08997 * 113.98823 * 229.18132 * 16 14 13 29 29 H 1.09000 * 113.98704 * 1.28700 * 16 14 13 30 30 H 1.08004 * 119.83683 * 359.97438 * 18 17 16 31 31 H 1.08004 * 119.91160 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.12882 * 180.02562 * 20 19 18 33 33 H 1.07991 * 119.93645 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.7751 -4.1301 1.1190 12 16 3.8514 -5.4509 0.6699 13 6 3.4626 -5.2184 -0.9787 14 6 4.0231 -6.0278 -2.1196 15 1 3.5174 -5.8244 -3.0636 16 6 5.5463 -5.9484 -2.2239 17 6 5.5059 -7.4275 -1.9022 18 6 6.2604 -8.5761 -1.6969 19 6 5.6408 -9.7732 -1.4027 20 6 4.2630 -9.8381 -1.3094 21 6 3.5078 -8.6987 -1.5115 22 6 4.1276 -7.4988 -1.8064 23 7 2.6240 -4.2459 -1.1052 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.5885 -3.7755 2.1220 28 1 5.9107 -5.7225 -3.2260 29 1 6.0122 -5.3390 -1.4495 30 1 7.3372 -8.5316 -1.7680 31 1 6.2337 -10.6619 -1.2439 32 1 3.7788 -10.7754 -1.0786 33 1 2.4313 -8.7460 -1.4398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302516777.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:27 Heat of formation + Delta-G solvation = 83.458048 kcal Electronic energy + Delta-G solvation = -17008.333522 eV Core-core repulsion = 14319.021500 eV Total energy + Delta-G solvation = -2689.312023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.73949 -40.52130 -36.74237 -35.29735 -32.59884 -31.65144 -29.49576 -28.39995 -26.74974 -25.62158 -23.82615 -22.33438 -21.03855 -20.64853 -18.61212 -18.43722 -17.45788 -16.85992 -16.57383 -16.28228 -15.55936 -15.37847 -14.95128 -14.37118 -14.13876 -13.94995 -13.90980 -13.69194 -13.25661 -13.04242 -12.96212 -12.93820 -12.63451 -12.37721 -11.90766 -11.67560 -11.61534 -11.34248 -10.64780 -10.56843 -10.31756 -9.79805 -9.64705 -9.42814 -8.24054 -6.37325 -0.19901 0.35117 0.44910 0.48789 0.82119 1.37913 1.41824 1.49877 1.92949 2.40526 2.77514 3.01116 3.07833 3.22088 3.48235 3.64541 4.12415 4.21893 4.24904 4.35953 4.43242 4.62063 4.68242 4.72974 4.82152 4.92492 4.97507 5.13680 5.17153 5.33245 5.42029 5.49597 5.59489 5.67250 5.76898 6.07647 6.09495 6.71114 6.95261 7.30485 8.86287 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.039621 B = 0.004024 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.532895 B = 6957.074472 C = 7147.737320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.094 3.906 10 C 0.080 3.920 11 C -0.275 4.275 12 S 0.154 5.846 13 C 0.048 3.952 14 C 0.025 3.975 15 H 0.115 0.885 16 C -0.059 4.059 17 C -0.124 4.124 18 C -0.104 4.104 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.097 4.097 22 C -0.149 4.149 23 N -0.498 5.498 24 H 0.268 0.732 25 H 0.003 0.997 26 H 0.020 0.980 27 H 0.182 0.818 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.751 -19.745 -1.823 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.054 3.946 10 C -0.050 4.050 11 C -0.413 4.413 12 S 0.408 5.592 13 C -0.230 4.230 14 C 0.003 3.997 15 H 0.133 0.867 16 C -0.096 4.096 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.115 4.115 22 C -0.150 4.150 23 N -0.213 5.213 24 H 0.077 0.923 25 H 0.021 0.979 26 H 0.038 0.962 27 H 0.199 0.801 28 H 0.143 0.857 29 H 0.115 0.885 30 H 0.159 0.841 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.054 -20.180 -1.773 24.656 hybrid contribution -1.055 1.923 -0.013 2.194 sum 13.000 -18.257 -1.786 22.483 Atomic orbital electron populations 1.70062 1.07668 1.28252 1.50779 1.25919 0.95827 1.03112 0.94277 0.85434 0.78293 0.77777 0.79155 1.19609 1.20184 1.18874 1.21212 0.92851 0.91024 1.51763 0.93090 1.17643 0.91682 0.89013 0.96267 1.20724 0.99773 0.97687 0.86840 1.26963 1.06179 1.03923 1.04201 1.83145 1.42904 1.30962 1.02155 1.27090 0.99044 0.97766 0.99066 1.19833 0.97547 0.87975 0.94320 0.86740 1.21911 0.91627 0.91271 1.04821 1.22357 0.94622 0.95797 0.99676 1.20861 1.00908 0.90882 0.99544 1.21389 0.94853 0.98100 0.98518 1.21350 0.94443 0.98028 0.99777 1.20479 1.00515 0.91047 0.99479 1.21496 0.96959 0.93891 1.02655 1.66127 1.13588 1.08686 1.32901 0.92337 0.97905 0.96175 0.80080 0.85679 0.88545 0.84099 0.82627 0.83011 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.53 -31.52 9.09 25.60 0.23 -31.29 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.09 5.34 5.39 29.10 0.16 5.49 16 10 C 0.08 3.86 5.93 41.52 0.25 4.10 16 11 C -0.27 -11.16 11.14 66.78 0.74 -10.41 16 12 S 0.15 4.95 22.70 -56.49 -1.28 3.67 16 13 C 0.05 1.74 6.43 88.52 0.57 2.31 16 14 C 0.03 0.71 4.27 -14.66 -0.06 0.64 16 15 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 16 C -0.06 -1.27 7.97 30.04 0.24 -1.03 16 17 C -0.12 -2.65 7.32 -21.79 -0.16 -2.81 16 18 C -0.10 -1.75 10.05 22.38 0.22 -1.53 16 19 C -0.11 -1.61 10.03 22.21 0.22 -1.39 16 20 C -0.12 -1.95 10.06 22.26 0.22 -1.72 16 21 C -0.10 -2.14 10.04 22.25 0.22 -1.91 16 22 C -0.15 -3.70 6.65 -19.82 -0.13 -3.83 16 23 N -0.50 -22.76 10.53 -179.40 -1.89 -24.65 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.18 6.77 8.06 -2.91 -0.02 6.75 16 28 H 0.13 2.11 8.14 -2.39 -0.02 2.10 16 29 H 0.10 2.12 7.99 -2.39 -0.02 2.10 16 30 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.12 2.52 8.06 -2.92 -0.02 2.50 16 Total: -1.00 -70.65 304.07 3.44 -67.20 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.11 Total: 5.81 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 3.19 Total: -42.49 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.60 Total: -81.26 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.28 Total: 3.67 kcal Total: -70.65 3.44 -67.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302516777.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.660 kcal (2) G-P(sol) polarization free energy of solvation -70.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds