Wall clock time and date at job start Mon Mar 30 2020 06:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86793 * 120.00037 * 2 1 4 4 H 1.48500 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47435 * 299.99928 * 3 2 1 6 6 H 1.48500 * 109.46859 * 60.00293 * 3 2 1 7 7 C 1.40325 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99363 * 179.97438 * 7 2 1 9 9 C 1.39997 * 120.00259 * 0.02562 * 7 2 1 10 10 N 1.30523 * 124.92171 * 0.02562 * 9 7 2 11 11 C 1.32805 * 118.01552 * 179.97438 * 10 9 7 12 12 C 1.41977 * 128.65232 * 179.97438 * 11 10 9 13 13 C 1.35716 * 120.55137 * 179.97438 * 12 11 10 14 14 C 1.39684 * 120.80446 * 0.04349 * 13 12 11 15 15 O 1.35774 * 120.00184 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99654 * 359.97438 * 15 14 13 17 17 F 1.39904 * 109.47236 * 299.99656 * 16 15 14 18 18 F 1.39901 * 109.47141 * 60.00011 * 16 15 14 19 19 C 1.38320 * 119.99880 * 359.97438 * 14 13 12 20 20 C 1.39107 * 120.04389 * 0.02562 * 19 14 13 21 21 S 1.75849 * 124.91706 * 180.02562 * 9 7 2 22 22 H 0.97001 * 120.00011 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.72150 * 0.02562 * 12 11 10 24 24 H 1.07999 * 119.59750 * 180.02562 * 13 12 11 25 25 H 1.09003 * 109.46912 * 180.02562 * 16 15 14 26 26 H 1.07998 * 119.97857 * 179.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7002 1.3463 0.0006 5 1 1.8815 2.3964 -1.2125 6 1 1.8814 2.3963 1.2126 7 6 2.0077 -1.2153 -0.0005 8 1 3.0878 -1.2153 -0.0010 9 6 1.3077 -2.4277 -0.0016 10 7 0.0073 -2.5396 -0.0027 11 6 -0.5137 -3.7612 -0.0042 12 6 -1.8814 -4.1420 -0.0050 13 6 -2.2326 -5.4530 -0.0070 14 6 -1.2587 -6.4543 -0.0074 15 8 -1.6283 -7.7608 -0.0090 16 6 -3.0302 -8.0384 -0.0095 17 9 -3.6160 -7.4833 1.1333 18 9 -3.6155 -7.4807 -1.1513 19 6 0.0822 -6.1150 -0.0063 20 6 0.4619 -4.7768 -0.0042 21 16 2.0531 -4.0204 -0.0018 22 1 -0.4850 0.8401 -0.0004 23 1 -2.6488 -3.3820 -0.0049 24 1 -3.2777 -5.7252 -0.0081 25 1 -3.1870 -9.1171 -0.0103 26 1 0.8349 -6.8895 -0.0062 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309335490.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:03 Heat of formation + Delta-G solvation = -104.045825 kcal Electronic energy + Delta-G solvation = -17698.079138 eV Core-core repulsion = 14310.573713 eV Total energy + Delta-G solvation = -3387.505425 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.022 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.10536 -47.10696 -39.28507 -37.73071 -35.19097 -33.32248 -30.25155 -29.09964 -26.82015 -25.22341 -22.85721 -21.85202 -20.52253 -18.72508 -18.06532 -17.65993 -16.96704 -16.69679 -15.69097 -15.12224 -14.31743 -14.23876 -14.21178 -13.66541 -13.44467 -13.11908 -13.05465 -12.89254 -12.85500 -12.54161 -11.70558 -11.56224 -11.55718 -11.27460 -10.85898 -10.53583 -10.41820 -9.69192 -9.42619 -9.00347 -7.84219 -7.53550 -6.96951 -6.92462 -4.93997 1.80830 2.09552 2.61387 2.82146 2.87561 2.93239 3.13568 3.25621 3.59955 3.65806 3.73296 4.49241 4.51183 4.86283 5.17475 5.42907 5.52111 5.86219 5.96701 6.35223 6.60591 6.63155 6.85949 7.05093 7.12118 7.26477 7.62506 7.82206 7.94881 8.26953 9.66472 9.82237 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.041003 B = 0.004757 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.706269 B = 5884.178024 C = 6392.378670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.063 3.937 3 Si 0.927 3.073 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.364 4.364 8 H 0.102 0.898 9 C 0.258 3.742 10 N -0.546 5.546 11 C 0.171 3.829 12 C -0.107 4.107 13 C -0.145 4.145 14 C 0.009 3.991 15 O -0.324 6.324 16 C 0.412 3.588 17 F -0.204 7.204 18 F -0.204 7.204 19 C -0.050 4.050 20 C -0.220 4.220 21 S -0.119 6.119 22 H 0.287 0.713 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.171 0.829 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -7.361 -0.013 7.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.307 5.307 2 C -0.169 4.169 3 Si 0.749 3.251 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.405 4.405 8 H 0.120 0.880 9 C 0.007 3.993 10 N -0.266 5.266 11 C 0.039 3.961 12 C -0.130 4.130 13 C -0.166 4.166 14 C -0.036 4.036 15 O -0.243 6.243 16 C 0.321 3.679 17 F -0.186 7.186 18 F -0.186 7.186 19 C -0.074 4.074 20 C -0.341 4.341 21 S 0.135 5.865 22 H 0.099 0.901 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.188 0.812 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.309 -7.189 -0.011 7.550 hybrid contribution -0.866 0.526 -0.002 1.014 sum -3.175 -6.662 -0.013 7.380 Atomic orbital electron populations 1.69976 1.07674 1.29656 1.23366 1.26219 0.95215 1.01518 0.93929 0.85930 0.80698 0.79305 0.79168 1.17753 1.19169 1.19175 1.19346 0.95139 0.87876 1.38144 0.87991 1.23725 0.88760 0.92512 0.94318 1.66855 1.08703 1.18369 1.32652 1.19631 0.93907 0.87549 0.95033 1.19980 0.93286 0.94719 1.04977 1.20670 0.97901 0.93073 1.04991 1.18086 0.93389 0.80481 1.11681 1.86417 1.21967 1.25853 1.90024 1.23161 0.77064 0.95832 0.71815 1.93076 1.84719 1.88538 1.52281 1.93075 1.84736 1.88440 1.52355 1.19040 0.92220 0.93463 1.02688 1.23000 0.95642 0.96960 1.18482 1.84361 1.09252 1.08740 1.84125 0.90149 0.86078 0.86093 0.81249 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.99 11.84 55.57 0.66 -16.33 15 2 C 0.06 1.46 5.50 -17.28 -0.10 1.36 15 3 Si 0.93 16.56 29.56 -169.99 -5.03 11.54 15 4 H -0.25 -4.40 7.11 56.52 0.40 -4.00 15 5 H -0.27 -4.70 7.11 56.52 0.40 -4.30 15 6 H -0.27 -4.70 7.11 56.52 0.40 -4.30 15 7 C -0.36 -8.93 9.38 -38.14 -0.36 -9.29 15 8 H 0.10 2.26 7.85 -52.48 -0.41 1.85 15 9 C 0.26 6.82 7.03 -17.45 -0.12 6.69 15 10 N -0.55 -15.12 8.58 -10.26 -0.09 -15.20 15 11 C 0.17 4.42 6.94 -85.04 -0.59 3.83 15 12 C -0.11 -2.46 10.07 -39.05 -0.39 -2.85 15 13 C -0.14 -2.96 8.16 -39.94 -0.33 -3.28 15 14 C 0.01 0.17 6.49 -39.01 -0.25 -0.08 15 15 O -0.32 -5.41 10.42 -19.03 -0.20 -5.60 15 16 C 0.41 5.23 5.98 101.05 0.60 5.83 15 17 F -0.20 -2.93 15.57 2.25 0.04 -2.90 15 18 F -0.20 -2.93 15.57 2.25 0.04 -2.89 15 19 C -0.05 -1.08 10.00 -39.23 -0.39 -1.47 15 20 C -0.22 -5.34 6.55 -38.28 -0.25 -5.60 15 21 S -0.12 -2.83 23.33 -107.50 -2.51 -5.34 15 22 H 0.29 6.27 8.29 -40.82 -0.34 5.93 15 23 H 0.12 2.62 8.06 -52.49 -0.42 2.20 15 24 H 0.12 2.22 5.07 -52.49 -0.27 1.95 15 25 H 0.17 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.12 2.24 8.06 -52.49 -0.42 1.82 15 LS Contribution 257.75 15.07 3.88 3.88 Total: -1.00 -29.35 257.75 -6.47 -35.81 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -1.08 Total: 1.88 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.18 Total: -4.85 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.57 Total: -31.54 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.20 Total: -5.60 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.07 Total: -5.79 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.54 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -2.51 Total: -5.34 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.35 -6.47 -35.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309335490.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.233 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds