Wall clock time and date at job start Mon Mar 30 2020 06:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86793 * 120.00037 * 2 1 4 4 H 1.48500 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47435 * 299.99928 * 3 2 1 6 6 H 1.48500 * 109.46859 * 60.00293 * 3 2 1 7 7 C 1.40325 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99363 * 179.97438 * 7 2 1 9 9 C 1.39997 * 120.00259 * 0.02562 * 7 2 1 10 10 N 1.30523 * 124.92171 * 0.02562 * 9 7 2 11 11 C 1.32805 * 118.01552 * 179.97438 * 10 9 7 12 12 C 1.41977 * 128.65232 * 179.97438 * 11 10 9 13 13 C 1.35716 * 120.55137 * 179.97438 * 12 11 10 14 14 C 1.39684 * 120.80446 * 0.04349 * 13 12 11 15 15 O 1.35774 * 120.00184 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99654 * 359.97438 * 15 14 13 17 17 F 1.39904 * 109.47236 * 299.99656 * 16 15 14 18 18 F 1.39901 * 109.47141 * 60.00011 * 16 15 14 19 19 C 1.38320 * 119.99880 * 359.97438 * 14 13 12 20 20 C 1.39107 * 120.04389 * 0.02562 * 19 14 13 21 21 S 1.75849 * 124.91706 * 180.02562 * 9 7 2 22 22 H 0.97001 * 120.00011 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.72150 * 0.02562 * 12 11 10 24 24 H 1.07999 * 119.59750 * 180.02562 * 13 12 11 25 25 H 1.09003 * 109.46912 * 180.02562 * 16 15 14 26 26 H 1.07998 * 119.97857 * 179.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7002 1.3463 0.0006 5 1 1.8815 2.3964 -1.2125 6 1 1.8814 2.3963 1.2126 7 6 2.0077 -1.2153 -0.0005 8 1 3.0878 -1.2153 -0.0010 9 6 1.3077 -2.4277 -0.0016 10 7 0.0073 -2.5396 -0.0027 11 6 -0.5137 -3.7612 -0.0042 12 6 -1.8814 -4.1420 -0.0050 13 6 -2.2326 -5.4530 -0.0070 14 6 -1.2587 -6.4543 -0.0074 15 8 -1.6283 -7.7608 -0.0090 16 6 -3.0302 -8.0384 -0.0095 17 9 -3.6160 -7.4833 1.1333 18 9 -3.6155 -7.4807 -1.1513 19 6 0.0822 -6.1150 -0.0063 20 6 0.4619 -4.7768 -0.0042 21 16 2.0531 -4.0204 -0.0018 22 1 -0.4850 0.8401 -0.0004 23 1 -2.6488 -3.3820 -0.0049 24 1 -3.2777 -5.7252 -0.0081 25 1 -3.1870 -9.1171 -0.0103 26 1 0.8349 -6.8895 -0.0062 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309335490.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:03 Heat of formation + Delta-G solvation = -122.345584 kcal Electronic energy + Delta-G solvation = -17698.872675 eV Core-core repulsion = 14310.573713 eV Total energy + Delta-G solvation = -3388.298962 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.022 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.19568 -48.20291 -40.92567 -39.34326 -36.89946 -35.07779 -31.97494 -30.87816 -28.40932 -26.59238 -24.55332 -23.58098 -22.23414 -20.19207 -19.43598 -18.76774 -18.62629 -18.32336 -17.18723 -16.78932 -15.90684 -15.78086 -15.62751 -14.99377 -14.75521 -14.62484 -14.60393 -14.45215 -14.41772 -13.99485 -13.22402 -13.08220 -13.07429 -12.96218 -12.51194 -12.05167 -11.95272 -11.47916 -11.11112 -10.80519 -9.71825 -9.34723 -8.76594 -8.67212 -6.79928 0.02850 0.33326 0.88355 1.31414 1.38489 1.42876 1.61728 1.89881 1.90357 2.14868 2.66921 2.75019 3.29497 3.60580 3.75140 3.81193 3.87941 4.22269 4.25000 4.64297 4.86986 4.93305 5.14371 5.29950 5.43916 5.47293 5.87325 6.10838 6.21240 6.43521 7.82383 8.11945 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.041003 B = 0.004757 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.706269 B = 5884.178024 C = 6392.378670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.021 3.979 3 Si 1.010 2.990 4 H -0.242 1.242 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.385 4.385 8 H 0.118 0.882 9 C 0.223 3.777 10 N -0.583 5.583 11 C 0.131 3.869 12 C -0.121 4.121 13 C -0.138 4.138 14 C 0.029 3.971 15 O -0.325 6.325 16 C 0.404 3.596 17 F -0.214 7.214 18 F -0.214 7.214 19 C -0.062 4.062 20 C -0.238 4.238 21 S -0.104 6.104 22 H 0.296 0.704 23 H 0.123 0.877 24 H 0.145 0.855 25 H 0.240 0.760 26 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.077 -8.337 -0.016 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.207 4.207 3 Si 0.827 3.173 4 H -0.165 1.165 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.426 4.426 8 H 0.136 0.864 9 C -0.028 4.028 10 N -0.305 5.305 11 C 0.001 3.999 12 C -0.143 4.143 13 C -0.159 4.159 14 C -0.017 4.017 15 O -0.243 6.243 16 C 0.315 3.685 17 F -0.196 7.196 18 F -0.196 7.196 19 C -0.085 4.085 20 C -0.358 4.358 21 S 0.151 5.849 22 H 0.107 0.893 23 H 0.141 0.859 24 H 0.162 0.838 25 H 0.255 0.745 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.368 -8.222 -0.014 8.556 hybrid contribution -1.000 0.621 -0.001 1.177 sum -3.367 -7.601 -0.015 8.313 Atomic orbital electron populations 1.70061 1.09715 1.31305 1.24148 1.27352 0.95903 1.04976 0.92453 0.84733 0.79500 0.73722 0.79311 1.16506 1.18547 1.18555 1.19879 0.96092 0.88316 1.38302 0.86422 1.24187 0.89164 0.94025 0.95443 1.66826 1.09686 1.19742 1.34209 1.20017 0.95319 0.87698 0.96884 1.20158 0.92459 0.96004 1.05652 1.20909 0.99221 0.92166 1.03576 1.18153 0.92870 0.82104 1.08580 1.86447 1.25047 1.23279 1.89537 1.24326 0.74765 0.98598 0.70803 1.93061 1.84649 1.88983 1.52867 1.93060 1.84666 1.88888 1.52939 1.19308 0.93638 0.92875 1.02728 1.23261 0.95516 0.97939 1.19124 1.84002 1.09084 1.07562 1.84273 0.89276 0.85921 0.83802 0.74460 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.23 11.84 21.89 0.26 -36.97 15 2 C 0.02 0.98 5.50 85.38 0.47 1.45 15 3 Si 1.01 33.52 29.56 68.60 2.03 35.54 15 4 H -0.24 -7.49 7.11 99.48 0.71 -6.79 15 5 H -0.26 -8.35 7.11 99.48 0.71 -7.64 15 6 H -0.26 -8.35 7.11 99.48 0.71 -7.65 15 7 C -0.39 -19.27 9.38 23.20 0.22 -19.05 15 8 H 0.12 5.26 7.85 -2.91 -0.02 5.23 15 9 C 0.22 12.17 7.03 85.31 0.60 12.77 15 10 N -0.58 -33.63 8.58 -186.39 -1.60 -35.23 15 11 C 0.13 6.99 6.94 40.55 0.28 7.27 15 12 C -0.12 -5.60 10.07 22.61 0.23 -5.38 15 13 C -0.14 -5.46 8.16 22.03 0.18 -5.28 15 14 C 0.03 1.11 6.49 22.64 0.15 1.26 15 15 O -0.32 -9.75 10.42 -91.02 -0.95 -10.70 15 16 C 0.40 8.62 5.98 113.37 0.68 9.30 15 17 F -0.21 -5.45 15.57 44.97 0.70 -4.75 15 18 F -0.21 -5.44 15.57 44.97 0.70 -4.74 15 19 C -0.06 -2.60 10.00 22.50 0.22 -2.38 15 20 C -0.24 -11.71 6.55 23.11 0.15 -11.55 15 21 S -0.10 -5.02 23.33 -56.49 -1.32 -6.33 15 22 H 0.30 13.25 8.29 -92.71 -0.77 12.48 15 23 H 0.12 5.49 8.06 -2.91 -0.02 5.46 15 24 H 0.14 4.98 5.07 -2.91 -0.01 4.97 15 25 H 0.24 1.85 8.14 -2.39 -0.02 1.83 15 26 H 0.14 5.08 8.06 -2.91 -0.02 5.06 15 Total: -1.00 -66.04 257.75 4.25 -61.80 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.25 Total: 12.96 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 3.18 Total: -11.58 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.34 Total: -72.20 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.95 Total: -10.70 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 1.40 Total: -9.49 kcal Atomic # 14 Polarization: 33.52 SS G_CDS: 2.03 Total: 35.54 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -1.32 Total: -6.33 kcal Total: -66.04 4.25 -61.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309335490.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.548 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds