Wall clock time and date at job start Mon Mar 30 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30597 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48502 * 109.47081 * 274.97852 * 3 2 1 5 5 H 1.48497 * 109.47182 * 34.98073 * 3 2 1 6 6 H 1.48496 * 109.47134 * 154.98325 * 3 2 1 7 7 C 1.40358 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99685 * 173.91141 * 7 2 1 9 9 C 1.40169 * 119.99627 * 354.19024 * 7 2 1 10 10 N 1.30494 * 124.94012 * 5.14404 * 9 7 2 11 11 C 1.32888 * 117.98119 * 179.76577 * 10 9 7 12 12 C 1.41948 * 128.68353 * 180.19624 * 11 10 9 13 13 C 1.35842 * 120.58172 * 180.33372 * 12 11 10 14 14 C 1.39059 * 120.93210 * 0.02562 * 13 12 11 15 15 C 1.38094 * 120.06658 * 359.97438 * 14 13 12 16 16 O 1.35965 * 120.00920 * 180.02562 * 15 14 13 17 17 C 1.42898 * 117.00142 * 0.02562 * 16 15 14 18 18 F 1.39903 * 109.47341 * 300.00054 * 17 16 15 19 19 F 1.39900 * 109.47215 * 60.00151 * 17 16 15 20 20 C 1.39802 * 119.97722 * 0.03741 * 15 14 13 21 21 S 1.75866 * 124.93130 * 185.44999 * 9 7 2 22 22 H 0.96993 * 119.99655 * 0.02562 * 1 2 3 23 23 H 1.08002 * 119.71346 * 0.35895 * 12 11 10 24 24 H 1.07995 * 119.53705 * 180.02562 * 13 12 11 25 25 H 1.07998 * 119.96746 * 179.97438 * 14 13 12 26 26 H 1.09006 * 109.46965 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.3823 2.1071 -1.3948 5 1 1.4941 2.6200 0.8026 6 1 3.5862 1.4120 0.5921 7 6 2.0077 -1.2155 0.0005 8 1 3.0832 -1.2182 -0.0987 9 6 1.3122 -2.4262 0.1240 10 7 0.0127 -2.5424 0.1480 11 6 -0.5022 -3.7619 0.2657 12 6 -1.8674 -4.1479 0.3115 13 6 -2.2119 -5.4553 0.4430 14 6 -1.2393 -6.4449 0.5363 15 6 0.0987 -6.1059 0.4953 16 8 1.0487 -7.0745 0.5861 17 6 0.5910 -8.4214 0.7215 18 9 -0.1772 -8.5382 1.8849 19 9 -0.1890 -8.7628 -0.3885 20 6 0.4763 -4.7666 0.3607 21 16 2.0643 -4.0086 0.2766 22 1 -0.4849 0.8400 -0.0004 23 1 -2.6391 -3.3956 0.2407 24 1 -3.2558 -5.7302 0.4756 25 1 -1.5308 -7.4795 0.6409 26 1 1.4482 -9.0918 0.7838 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393813570.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:05 Heat of formation + Delta-G solvation = -123.374289 kcal Electronic energy + Delta-G solvation = -17877.659935 eV Core-core repulsion = 14489.316365 eV Total energy + Delta-G solvation = -3388.343570 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.022 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.26803 -48.26360 -40.94599 -39.34387 -37.03876 -35.25420 -31.32563 -30.99555 -28.43626 -26.90402 -24.79679 -23.19050 -22.33841 -20.04574 -19.65352 -18.85608 -18.46314 -18.09606 -17.29117 -16.79598 -16.06513 -15.76914 -15.69410 -15.41347 -15.03964 -14.64823 -14.63170 -14.37833 -14.04143 -13.57712 -13.38623 -13.16048 -12.99626 -12.81801 -12.24499 -12.13547 -11.98545 -11.65758 -11.19635 -10.46545 -9.77403 -9.52762 -8.71210 -8.62301 -6.89414 0.03357 0.45726 0.96804 1.33653 1.40497 1.42629 1.60659 1.72554 1.93323 2.14167 2.55938 2.76887 3.30181 3.55131 3.73469 3.84575 4.06601 4.19620 4.34098 4.70280 4.78301 4.96274 5.19216 5.42530 5.55556 5.64278 5.86686 6.09578 6.19497 6.40713 7.78745 8.08643 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.040436 B = 0.005264 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.279039 B = 5317.921422 C = 5832.406767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.021 3.979 3 Si 1.012 2.988 4 H -0.254 1.254 5 H -0.262 1.262 6 H -0.245 1.245 7 C -0.380 4.380 8 H 0.119 0.881 9 C 0.222 3.778 10 N -0.583 5.583 11 C 0.175 3.825 12 C -0.179 4.179 13 C -0.044 4.044 14 C -0.266 4.266 15 C 0.171 3.829 16 O -0.338 6.338 17 C 0.407 3.593 18 F -0.208 7.208 19 F -0.208 7.208 20 C -0.289 4.289 21 S -0.106 6.106 22 H 0.298 0.702 23 H 0.122 0.878 24 H 0.160 0.840 25 H 0.145 0.855 26 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 -8.028 1.000 8.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.208 4.208 3 Si 0.828 3.172 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.168 1.168 7 C -0.420 4.420 8 H 0.137 0.863 9 C -0.028 4.028 10 N -0.305 5.305 11 C 0.043 3.957 12 C -0.201 4.201 13 C -0.065 4.065 14 C -0.288 4.288 15 C 0.123 3.877 16 O -0.256 6.256 17 C 0.318 3.682 18 F -0.190 7.190 19 F -0.190 7.190 20 C -0.410 4.410 21 S 0.148 5.852 22 H 0.109 0.891 23 H 0.140 0.860 24 H 0.178 0.822 25 H 0.163 0.837 26 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 2.030 -7.771 0.983 8.092 hybrid contribution -0.986 0.184 0.010 1.003 sum 1.044 -7.587 0.993 7.723 Atomic orbital electron populations 1.70034 1.09759 1.31590 1.23349 1.27399 0.95929 1.05012 0.92417 0.84750 0.79052 0.73316 0.80070 1.17851 1.18662 1.16768 1.19960 0.96515 0.88435 1.37102 0.86318 1.24252 0.89369 0.94135 0.95037 1.66965 1.09906 1.19293 1.34295 1.19968 0.95322 0.86858 0.93563 1.20390 0.91933 0.97182 1.10592 1.20530 1.00201 0.90658 0.95117 1.21143 0.90079 1.01159 1.16388 1.17930 0.88102 0.84876 0.96763 1.86601 1.35385 1.15938 1.87660 1.24243 0.88919 0.83841 0.71191 1.93060 1.79427 1.95630 1.50848 1.93060 1.78850 1.91913 1.55132 1.22904 0.96376 0.95661 1.26060 1.84024 1.09655 1.07668 1.83817 0.89053 0.86010 0.82236 0.83701 0.74845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.70 11.86 21.90 0.26 -36.44 15 2 C 0.02 0.97 5.49 85.39 0.47 1.44 15 3 Si 1.01 33.18 29.57 68.60 2.03 35.21 15 4 H -0.25 -7.95 7.11 99.48 0.71 -7.24 15 5 H -0.26 -8.25 7.11 99.48 0.71 -7.54 15 6 H -0.24 -7.58 7.11 99.48 0.71 -6.87 15 7 C -0.38 -19.07 9.39 23.26 0.22 -18.86 15 8 H 0.12 5.32 7.86 -2.91 -0.02 5.30 15 9 C 0.22 12.26 7.03 85.36 0.60 12.86 15 10 N -0.58 -33.82 8.61 -186.43 -1.61 -35.43 15 11 C 0.18 9.42 6.94 40.47 0.28 9.70 15 12 C -0.18 -8.14 10.07 22.63 0.23 -7.91 15 13 C -0.04 -1.67 9.93 21.91 0.22 -1.45 15 14 C -0.27 -10.24 8.27 22.43 0.19 -10.06 15 15 C 0.17 7.49 6.51 22.61 0.15 7.64 15 16 O -0.34 -12.41 10.44 -93.15 -0.97 -13.38 15 17 C 0.41 10.06 5.98 113.37 0.68 10.74 15 18 F -0.21 -5.64 15.58 44.97 0.70 -4.94 15 19 F -0.21 -5.64 15.58 44.97 0.70 -4.94 15 20 C -0.29 -14.78 6.50 23.22 0.15 -14.63 15 21 S -0.11 -5.32 23.33 -56.49 -1.32 -6.64 15 22 H 0.30 13.19 8.29 -92.71 -0.77 12.42 15 23 H 0.12 5.27 8.06 -2.91 -0.02 5.25 15 24 H 0.16 4.54 8.06 -2.91 -0.02 4.51 15 25 H 0.15 4.82 5.07 -2.91 -0.01 4.80 15 26 H 0.24 2.78 8.14 -2.38 -0.02 2.76 15 Total: -1.00 -67.90 257.86 4.22 -63.69 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.25 Total: 13.40 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 3.17 Total: -10.52 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.35 Total: -71.87 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.97 Total: -13.38 kcal Atomic # 9 Polarization: -11.28 SS G_CDS: 1.40 Total: -9.88 kcal Atomic # 14 Polarization: 33.18 SS G_CDS: 2.03 Total: 35.21 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -1.32 Total: -6.64 kcal Total: -67.90 4.22 -63.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393813570.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.688 kcal (2) G-P(sol) polarization free energy of solvation -67.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds