Wall clock time and date at job start Mon Mar 30 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40583 * 119.87407 * 121.56975 * 3 2 1 5 5 C 1.35800 * 120.52974 * 180.02562 * 4 3 2 6 6 C 1.41127 * 120.25280 * 359.97438 * 5 4 3 7 7 C 1.40593 * 120.12553 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00006 * 153.97589 * 7 6 5 9 9 C 1.40131 * 119.99958 * 334.24777 * 7 6 5 10 10 N 1.30749 * 120.00174 * 342.14205 * 9 7 6 11 11 Si 1.86801 * 119.99941 * 162.14259 * 9 7 6 12 12 H 1.48498 * 109.47390 * 94.50738 * 11 9 7 13 13 H 1.48504 * 109.47330 * 214.50993 * 11 9 7 14 14 H 1.48505 * 109.47034 * 334.50490 * 11 9 7 15 15 C 1.41578 * 119.74273 * 0.23498 * 6 5 4 16 16 S 1.76207 * 120.25647 * 179.72100 * 15 6 5 17 17 C 1.39187 * 119.48814 * 359.48929 * 15 6 5 18 18 O 1.35831 * 120.13152 * 180.22651 * 17 15 6 19 19 C 1.42900 * 117.00076 * 270.32442 * 18 17 15 20 20 F 1.39902 * 109.47499 * 300.00444 * 19 18 17 21 21 F 1.39898 * 109.46974 * 60.00097 * 19 18 17 22 22 H 1.08003 * 119.73860 * 359.97438 * 4 3 2 23 23 H 1.07999 * 119.87156 * 179.97438 * 5 4 3 24 24 H 0.97005 * 119.99829 * 179.97438 * 10 9 7 25 25 H 1.41004 * 99.99779 * 89.99749 * 16 15 6 26 26 H 1.08994 * 109.46947 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 0.6392 -1.0386 5 6 4.6258 0.6475 -1.0521 6 6 5.3510 0.0138 -0.0205 7 6 6.7568 0.0236 -0.0374 8 1 7.3086 -0.0626 0.8870 9 6 7.4420 0.1509 -1.2531 10 7 6.8235 -0.0873 -2.3802 11 14 9.2390 0.6609 -1.2635 12 1 10.0972 -0.5505 -1.3018 13 1 9.5094 1.4971 -2.4606 14 1 9.5391 1.4415 -0.0364 15 6 4.6574 -0.6364 1.0286 16 16 5.5493 -1.4381 2.3196 17 6 3.2656 -0.6333 1.0349 18 8 2.5869 -1.2492 2.0374 19 6 2.2635 -2.6285 1.8503 20 9 1.4624 -2.7695 0.7120 21 9 3.4413 -3.3653 1.6857 22 1 2.7214 1.1263 -1.8326 23 1 5.1527 1.1408 -1.8554 24 1 7.2978 0.0012 -3.2218 25 1 5.6743 -0.3694 3.2310 26 1 1.7231 -2.9965 2.7223 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575639423.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:38 Heat of formation + Delta-G solvation = -99.130844 kcal Electronic energy + Delta-G solvation = -18322.543222 eV Core-core repulsion = 14935.250927 eV Total energy + Delta-G solvation = -3387.292295 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.022 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.52582 -46.63656 -38.95187 -36.73625 -35.56129 -33.90792 -30.61654 -29.33170 -26.37956 -25.37280 -22.09686 -21.62350 -18.82496 -18.17198 -17.70243 -17.20098 -16.86796 -15.93665 -15.71386 -14.89242 -14.56795 -13.70949 -13.51438 -13.30101 -13.11712 -12.99146 -12.70529 -12.52803 -12.16831 -12.04278 -11.97629 -11.76756 -11.47761 -11.15729 -10.89767 -10.68564 -10.61074 -10.22837 -9.72877 -9.49579 -7.93643 -7.87048 -7.36108 -6.98640 -4.94818 1.74330 2.02511 2.79283 2.83304 2.87729 2.90122 3.50040 3.55655 3.62486 3.67946 3.83604 4.13350 4.40296 4.93221 5.07795 5.19726 5.24645 5.95803 6.31822 6.40218 6.52572 6.66079 6.99212 7.24073 7.42081 7.45446 7.74801 8.04202 8.23975 8.28588 8.50113 9.55119 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.007497 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.796100 B = 3733.689527 C = 4493.340635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.290 3.710 3 C -0.189 4.189 4 C -0.040 4.040 5 C -0.152 4.152 6 C 0.149 3.851 7 C -0.394 4.394 8 H 0.104 0.896 9 C 0.071 3.929 10 N -0.750 5.750 11 Si 0.921 3.079 12 H -0.262 1.262 13 H -0.270 1.270 14 H -0.254 1.254 15 C -0.229 4.229 16 S -0.134 6.134 17 C 0.198 3.802 18 O -0.337 6.337 19 C 0.412 3.588 20 F -0.207 7.207 21 F -0.189 7.189 22 H 0.108 0.892 23 H 0.131 0.869 24 H 0.294 0.706 25 H 0.055 0.945 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 -1.287 3.215 3.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.021 4.021 3 C -0.196 4.196 4 C -0.061 4.061 5 C -0.172 4.172 6 C 0.142 3.858 7 C -0.420 4.420 8 H 0.122 0.878 9 C -0.154 4.154 10 N -0.371 5.371 11 Si 0.743 3.257 12 H -0.186 1.186 13 H -0.195 1.195 14 H -0.177 1.177 15 C -0.343 4.343 16 S 0.023 5.977 17 C 0.150 3.850 18 O -0.257 6.257 19 C 0.322 3.678 20 F -0.189 7.189 21 F -0.171 7.171 22 H 0.126 0.874 23 H 0.149 0.851 24 H 0.106 0.894 25 H 0.020 0.980 26 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.382 -1.893 3.643 4.123 hybrid contribution 0.737 1.208 -0.620 1.545 sum 1.119 -0.686 3.023 3.296 Atomic orbital electron populations 1.81035 1.12400 1.12969 1.10346 1.25709 0.92619 0.91700 0.92103 1.15550 0.83566 1.18857 1.01677 1.20305 0.94450 0.96552 0.94799 1.21014 0.92184 1.02952 1.01100 1.17723 0.93470 0.85990 0.88661 1.20091 0.91467 1.35616 0.94854 0.87798 1.26279 1.02518 0.91955 0.94649 1.69767 1.39564 1.28021 0.99700 0.86051 0.79946 0.79962 0.79731 1.18641 1.19487 1.17730 1.21146 0.91693 1.16900 1.04596 1.86273 1.75065 1.18005 1.18360 1.18346 0.89013 0.92006 0.85681 1.86460 1.74223 1.22732 1.42310 1.23210 0.78291 0.79323 0.86934 1.93085 1.73971 1.95219 1.56612 1.93127 1.50381 1.77205 1.96397 0.87375 0.85116 0.89410 0.97967 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.88 18.54 41.84 0.78 -10.10 15 2 C 0.29 6.30 13.50 -22.48 -0.30 6.00 15 3 C -0.19 -4.10 5.64 -106.43 -0.60 -4.70 15 4 C -0.04 -0.84 9.66 -39.57 -0.38 -1.22 15 5 C -0.15 -3.33 8.59 -39.36 -0.34 -3.67 15 6 C 0.15 3.42 5.57 -106.64 -0.59 2.82 15 7 C -0.39 -8.76 8.42 -37.98 -0.32 -9.08 15 8 H 0.10 2.25 7.03 -52.49 -0.37 1.88 15 9 C 0.07 1.47 5.12 -17.30 -0.09 1.38 15 10 N -0.75 -15.98 11.02 55.56 0.61 -15.37 15 11 Si 0.92 15.50 29.60 -169.99 -5.03 10.47 15 12 H -0.26 -4.43 7.11 56.52 0.40 -4.03 15 13 H -0.27 -4.44 7.11 56.52 0.40 -4.03 15 14 H -0.25 -4.28 7.11 56.52 0.40 -3.87 15 15 C -0.23 -5.14 6.02 -37.96 -0.23 -5.37 15 16 S -0.13 -2.73 22.15 -107.50 -2.38 -5.11 15 17 C 0.20 4.32 5.34 -38.58 -0.21 4.11 15 18 O -0.34 -6.68 9.18 -19.21 -0.18 -6.85 15 19 C 0.41 6.96 6.35 101.05 0.64 7.60 15 20 F -0.21 -3.94 15.77 2.25 0.04 -3.90 15 21 F -0.19 -3.50 15.36 2.25 0.03 -3.47 15 22 H 0.11 1.99 8.06 -52.48 -0.42 1.56 15 23 H 0.13 2.83 6.22 -52.49 -0.33 2.51 15 24 H 0.29 5.58 8.29 -40.82 -0.34 5.24 15 25 H 0.06 1.06 9.55 96.90 0.93 1.98 15 26 H 0.16 1.85 8.14 -51.93 -0.42 1.43 15 LS Contribution 264.44 15.07 3.99 3.99 Total: -1.00 -25.48 264.44 -4.31 -29.80 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: 0.25 Total: 2.67 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.42 Total: -2.12 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 1.39 Total: -25.47 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.18 Total: -6.85 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.07 Total: -7.37 kcal Atomic # 14 Polarization: 15.50 SS G_CDS: -5.03 Total: 10.47 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.38 Total: -5.11 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -25.48 -4.31 -29.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639423.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.335 kcal (2) G-P(sol) polarization free energy of solvation -25.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds