Wall clock time and date at job start Mon Mar 30 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40583 * 119.87407 * 121.56975 * 3 2 1 5 5 C 1.35800 * 120.52974 * 180.02562 * 4 3 2 6 6 C 1.41127 * 120.25280 * 359.97438 * 5 4 3 7 7 C 1.40593 * 120.12553 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00006 * 153.97589 * 7 6 5 9 9 C 1.40131 * 119.99958 * 334.24777 * 7 6 5 10 10 N 1.30749 * 120.00174 * 342.14205 * 9 7 6 11 11 Si 1.86801 * 119.99941 * 162.14259 * 9 7 6 12 12 H 1.48498 * 109.47390 * 94.50738 * 11 9 7 13 13 H 1.48504 * 109.47330 * 214.50993 * 11 9 7 14 14 H 1.48505 * 109.47034 * 334.50490 * 11 9 7 15 15 C 1.41578 * 119.74273 * 0.23498 * 6 5 4 16 16 S 1.76207 * 120.25647 * 179.72100 * 15 6 5 17 17 C 1.39187 * 119.48814 * 359.48929 * 15 6 5 18 18 O 1.35831 * 120.13152 * 180.22651 * 17 15 6 19 19 C 1.42900 * 117.00076 * 270.32442 * 18 17 15 20 20 F 1.39902 * 109.47499 * 300.00444 * 19 18 17 21 21 F 1.39898 * 109.46974 * 60.00097 * 19 18 17 22 22 H 1.08003 * 119.73860 * 359.97438 * 4 3 2 23 23 H 1.07999 * 119.87156 * 179.97438 * 5 4 3 24 24 H 0.97005 * 119.99829 * 179.97438 * 10 9 7 25 25 H 1.41004 * 99.99779 * 89.99749 * 16 15 6 26 26 H 1.08994 * 109.46947 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 0.6392 -1.0386 5 6 4.6258 0.6475 -1.0521 6 6 5.3510 0.0138 -0.0205 7 6 6.7568 0.0236 -0.0374 8 1 7.3086 -0.0626 0.8870 9 6 7.4420 0.1509 -1.2531 10 7 6.8235 -0.0873 -2.3802 11 14 9.2390 0.6609 -1.2635 12 1 10.0972 -0.5505 -1.3018 13 1 9.5094 1.4971 -2.4606 14 1 9.5391 1.4415 -0.0364 15 6 4.6574 -0.6364 1.0286 16 16 5.5493 -1.4381 2.3196 17 6 3.2656 -0.6333 1.0349 18 8 2.5869 -1.2492 2.0374 19 6 2.2635 -2.6285 1.8503 20 9 1.4624 -2.7695 0.7120 21 9 3.4413 -3.3653 1.6857 22 1 2.7214 1.1263 -1.8326 23 1 5.1527 1.1408 -1.8554 24 1 7.2978 0.0012 -3.2218 25 1 5.6743 -0.3694 3.2310 26 1 1.7231 -2.9965 2.7223 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575639423.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:38 Heat of formation + Delta-G solvation = -112.310678 kcal Electronic energy + Delta-G solvation = -18323.114742 eV Core-core repulsion = 14935.250927 eV Total energy + Delta-G solvation = -3387.863816 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.022 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.93856 -48.06137 -40.55205 -38.31971 -37.27318 -35.53109 -32.27996 -30.95355 -28.04854 -26.77722 -23.73868 -23.24115 -20.38591 -19.83351 -19.09130 -18.64565 -18.42478 -17.51389 -17.28225 -16.49851 -16.08935 -15.26402 -15.02310 -14.86840 -14.68414 -14.45891 -14.26221 -14.11650 -13.83137 -13.66073 -13.57276 -13.17302 -12.94530 -12.68751 -12.45094 -12.26310 -12.13101 -11.78406 -11.30154 -11.09714 -9.60210 -9.53797 -8.93509 -8.58643 -6.63505 0.11745 0.39693 1.25722 1.42694 1.47010 1.60219 1.86320 2.01264 2.10085 2.18930 2.26780 2.74347 2.78531 3.37538 3.47440 3.77123 3.87083 4.37794 4.70252 4.75247 4.89513 5.05627 5.32381 5.60274 5.76421 5.78589 6.11878 6.37714 6.58165 6.61018 6.79606 8.01156 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.007497 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.796100 B = 3733.689527 C = 4493.340635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.298 3.702 3 C -0.205 4.205 4 C -0.036 4.036 5 C -0.165 4.165 6 C 0.125 3.875 7 C -0.410 4.410 8 H 0.105 0.895 9 C 0.040 3.960 10 N -0.772 5.772 11 Si 0.987 3.013 12 H -0.260 1.260 13 H -0.261 1.261 14 H -0.254 1.254 15 C -0.253 4.253 16 S -0.126 6.126 17 C 0.197 3.803 18 O -0.345 6.345 19 C 0.404 3.596 20 F -0.221 7.221 21 F -0.200 7.200 22 H 0.129 0.871 23 H 0.129 0.871 24 H 0.305 0.695 25 H 0.065 0.935 26 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 -1.317 3.483 4.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.013 4.013 3 C -0.213 4.213 4 C -0.057 4.057 5 C -0.186 4.186 6 C 0.118 3.882 7 C -0.436 4.436 8 H 0.122 0.878 9 C -0.183 4.183 10 N -0.393 5.393 11 Si 0.807 3.193 12 H -0.185 1.185 13 H -0.185 1.185 14 H -0.177 1.177 15 C -0.368 4.368 16 S 0.031 5.969 17 C 0.149 3.851 18 O -0.264 6.264 19 C 0.316 3.684 20 F -0.203 7.203 21 F -0.182 7.182 22 H 0.147 0.853 23 H 0.147 0.853 24 H 0.117 0.883 25 H 0.030 0.970 26 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.098 -1.930 3.907 4.494 hybrid contribution 0.508 1.170 -0.689 1.450 sum 1.606 -0.759 3.219 3.676 Atomic orbital electron populations 1.81031 1.12585 1.13563 1.10803 1.25680 0.92513 0.91317 0.91745 1.15674 0.83564 1.19762 1.02320 1.20500 0.94247 0.95944 0.95006 1.21022 0.92618 1.03690 1.01243 1.18047 0.94227 0.86559 0.89333 1.20329 0.91514 1.36041 0.95688 0.87758 1.27022 1.06185 0.91296 0.93785 1.69770 1.41355 1.27712 1.00511 0.85070 0.74841 0.79537 0.79895 1.18465 1.18474 1.17716 1.21359 0.92299 1.17629 1.05500 1.86090 1.74870 1.18084 1.17838 1.18444 0.89098 0.91763 0.85791 1.86430 1.73921 1.24291 1.41796 1.24192 0.78117 0.77886 0.88243 1.93056 1.74230 1.95152 1.57856 1.93102 1.51310 1.77253 1.96527 0.85290 0.85305 0.88277 0.97000 0.76042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -21.84 18.54 19.00 0.35 -21.49 15 2 C 0.30 12.75 13.50 88.33 1.19 13.94 15 3 C -0.21 -8.85 5.64 -21.04 -0.12 -8.96 15 4 C -0.04 -1.50 9.66 22.28 0.22 -1.29 15 5 C -0.17 -7.27 8.59 22.41 0.19 -7.08 15 6 C 0.13 5.78 5.57 -21.17 -0.12 5.66 15 7 C -0.41 -18.13 8.42 23.30 0.20 -17.93 15 8 H 0.10 4.47 7.03 -2.91 -0.02 4.45 15 9 C 0.04 1.63 5.12 85.31 0.44 2.06 15 10 N -0.77 -32.45 11.02 21.86 0.24 -32.21 15 11 Si 0.99 30.55 29.60 68.60 2.03 32.58 15 12 H -0.26 -7.96 7.11 99.48 0.71 -7.25 15 13 H -0.26 -7.62 7.11 99.48 0.71 -6.91 15 14 H -0.25 -7.79 7.11 99.48 0.71 -7.08 15 15 C -0.25 -11.34 6.02 23.32 0.14 -11.20 15 16 S -0.13 -5.01 22.15 -56.49 -1.25 -6.26 15 17 C 0.20 8.55 5.34 22.92 0.12 8.67 15 18 O -0.34 -13.22 9.18 -91.65 -0.84 -14.06 15 19 C 0.40 12.91 6.35 113.37 0.72 13.63 15 20 F -0.22 -8.15 15.77 44.97 0.71 -7.44 15 21 F -0.20 -7.15 15.36 44.97 0.69 -6.46 15 22 H 0.13 4.64 8.06 -2.91 -0.02 4.62 15 23 H 0.13 5.62 6.22 -2.91 -0.02 5.60 15 24 H 0.31 11.28 8.29 -92.70 -0.77 10.51 15 25 H 0.07 2.42 9.55 73.80 0.70 3.13 15 26 H 0.22 4.31 8.14 -2.39 -0.02 4.29 15 Total: -1.00 -53.38 264.44 6.89 -46.49 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.98 Total: 11.34 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 2.98 Total: -2.49 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.59 Total: -53.70 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.84 Total: -14.06 kcal Atomic # 9 Polarization: -15.30 SS G_CDS: 1.40 Total: -13.90 kcal Atomic # 14 Polarization: 30.55 SS G_CDS: 2.03 Total: 32.58 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -1.25 Total: -6.26 kcal Total: -53.38 6.89 -46.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639423.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.817 kcal (2) G-P(sol) polarization free energy of solvation -53.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds