Wall clock time and date at job start Mon Mar 30 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39109 * 120.04042 * 16.06866 * 3 2 1 5 5 C 1.40525 * 119.79061 * 179.75150 * 4 3 2 6 6 C 1.41269 * 120.05426 * 180.25066 * 5 4 3 7 7 H 1.08002 * 120.00094 * 204.92555 * 6 5 4 8 8 C 1.39826 * 120.00397 * 24.91923 * 6 5 4 9 9 N 1.30909 * 119.99600 * 17.84371 * 8 6 5 10 10 Si 1.86797 * 120.00175 * 197.84524 * 8 6 5 11 11 H 1.48499 * 109.47063 * 90.00100 * 10 8 6 12 12 H 1.48506 * 109.47026 * 209.99861 * 10 8 6 13 13 H 1.48495 * 109.47458 * 330.00066 * 10 8 6 14 14 C 1.40860 * 119.88958 * 0.54552 * 5 4 3 15 15 C 1.37939 * 120.08412 * 359.70378 * 14 5 4 16 16 S 1.76196 * 119.90004 * 180.02562 * 15 14 5 17 17 C 1.39980 * 120.20597 * 0.02562 * 15 14 5 18 18 O 1.35539 * 119.94698 * 180.02562 * 17 15 14 19 19 C 1.42899 * 117.00022 * 269.97475 * 18 17 15 20 20 F 1.39902 * 109.47067 * 300.00022 * 19 18 17 21 21 F 1.39905 * 109.46904 * 59.99743 * 19 18 17 22 22 H 1.08002 * 120.10359 * 359.97438 * 4 3 2 23 23 H 0.97006 * 120.00261 * 179.97438 * 9 8 6 24 24 H 1.08002 * 119.96334 * 179.72790 * 14 5 4 25 25 H 1.34504 * 103.00269 * 270.02286 * 16 15 14 26 26 H 1.09004 * 109.47608 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2649 -1.1562 -0.3333 5 6 4.6702 -1.1483 -0.3367 6 6 5.3835 -2.3185 -0.6795 7 1 6.3898 -2.4636 -0.3152 8 6 4.7867 -3.2889 -1.4902 9 7 3.7372 -2.9843 -2.2110 10 14 5.4869 -5.0198 -1.5446 11 1 4.8365 -5.8499 -0.4991 12 1 5.2303 -5.6158 -2.8804 13 1 6.9503 -4.9699 -1.2976 14 6 5.3663 0.0267 0.0083 15 6 4.6704 1.1697 0.3430 16 16 5.5460 2.6369 0.7731 17 6 3.2706 1.1676 0.3421 18 8 2.5920 2.2937 0.6714 19 6 2.2665 2.4751 2.0510 20 9 1.4655 1.4132 2.4846 21 9 3.4432 2.5104 2.8069 22 1 2.7277 -2.0567 -0.5922 23 1 3.3234 -3.6574 -2.7737 24 1 6.4463 0.0329 0.0103 25 1 5.6966 2.5202 2.1045 26 1 1.7260 3.4133 2.1766 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575641934.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:24 Heat of formation + Delta-G solvation = -99.311124 kcal Electronic energy + Delta-G solvation = -18223.868035 eV Core-core repulsion = 14836.567922 eV Total energy + Delta-G solvation = -3387.300113 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.022 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.66438 -46.80111 -38.95305 -36.71993 -35.69025 -33.81632 -30.55746 -29.80539 -26.33243 -24.64676 -22.87841 -21.67523 -19.03165 -18.28528 -17.71950 -17.41809 -16.66317 -16.42922 -15.56607 -15.10385 -14.79590 -13.95845 -13.63921 -13.39450 -13.28235 -13.07782 -12.75470 -12.56136 -12.37026 -12.02831 -11.97565 -11.76593 -11.63213 -11.42670 -11.06983 -10.79069 -10.45177 -10.25463 -9.77974 -9.50589 -8.05758 -7.88693 -7.53748 -7.23506 -4.82320 1.62862 1.81042 2.38945 2.79603 2.88542 2.91438 3.35422 3.45866 3.59815 3.63224 3.78937 4.08150 4.34439 4.75253 4.90465 5.13799 5.15271 6.10172 6.23534 6.41680 6.57544 6.68016 6.74689 7.18505 7.32573 7.50001 7.69639 7.98940 8.23804 8.29174 8.33792 9.69693 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.022063 B = 0.006990 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.776533 B = 4004.826633 C = 4878.165997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.282 3.718 3 C -0.010 4.010 4 C -0.091 4.091 5 C 0.105 3.895 6 C -0.431 4.431 7 H 0.093 0.907 8 C 0.071 3.929 9 N -0.773 5.773 10 Si 0.919 3.081 11 H -0.263 1.263 12 H -0.274 1.274 13 H -0.257 1.257 14 C -0.151 4.151 15 C -0.054 4.054 16 S -0.146 6.146 17 C -0.008 4.008 18 O -0.307 6.307 19 C 0.392 3.608 20 F -0.210 7.210 21 F -0.214 7.214 22 H 0.138 0.862 23 H 0.292 0.708 24 H 0.122 0.878 25 H 0.070 0.930 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 3.630 4.066 5.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.033 4.033 3 C -0.016 4.016 4 C -0.114 4.114 5 C 0.099 3.901 6 C -0.458 4.458 7 H 0.111 0.889 8 C -0.151 4.151 9 N -0.395 5.395 10 Si 0.742 3.258 11 H -0.188 1.188 12 H -0.198 1.198 13 H -0.181 1.181 14 C -0.173 4.173 15 C -0.167 4.167 16 S 0.012 5.988 17 C -0.058 4.058 18 O -0.225 6.225 19 C 0.302 3.698 20 F -0.192 7.192 21 F -0.197 7.197 22 H 0.156 0.844 23 H 0.103 0.897 24 H 0.140 0.860 25 H 0.034 0.966 26 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.625 4.498 3.794 5.917 hybrid contribution 0.244 -1.921 0.910 2.139 sum 0.869 2.577 4.704 5.434 Atomic orbital electron populations 1.81033 1.12307 1.09051 1.10558 1.25792 0.92829 0.92257 0.92375 1.16097 0.83558 0.94790 1.07141 1.21564 0.94450 0.95433 0.99930 1.17550 0.91138 0.91976 0.89398 1.19742 1.01512 1.00257 1.24289 0.88886 1.26089 0.94266 1.01624 0.93095 1.69780 1.17126 1.36110 1.16529 0.86100 0.80711 0.80165 0.78808 1.18813 1.19844 1.18077 1.21425 0.98935 0.90579 1.06398 1.20852 0.92817 0.95779 1.07235 1.85475 1.73985 1.29325 1.10046 1.17789 0.88494 0.85894 1.13623 1.86673 1.73706 1.40788 1.21353 1.23719 0.77766 0.89471 0.78876 1.93060 1.73975 1.62119 1.90044 1.93025 1.51769 1.97034 1.77831 0.84435 0.89672 0.86035 0.96570 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.10 18.54 41.84 0.78 -9.32 15 2 C 0.28 6.21 13.51 -22.47 -0.30 5.90 15 3 C -0.01 -0.22 5.61 -106.82 -0.60 -0.82 15 4 C -0.09 -2.08 8.38 -38.40 -0.32 -2.40 15 5 C 0.10 2.36 5.57 -106.89 -0.59 1.76 15 6 C -0.43 -9.47 9.03 -37.84 -0.34 -9.81 15 7 H 0.09 1.92 7.91 -52.49 -0.41 1.50 15 8 C 0.07 1.50 5.13 -17.35 -0.09 1.41 15 9 N -0.77 -17.20 10.97 55.54 0.61 -16.59 15 10 Si 0.92 15.96 29.59 -169.99 -5.03 10.93 15 11 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 12 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 13 H -0.26 -4.40 7.11 56.52 0.40 -4.00 15 14 C -0.15 -3.17 9.49 -38.70 -0.37 -3.53 15 15 C -0.05 -1.12 5.93 -39.04 -0.23 -1.35 15 16 S -0.15 -2.62 23.93 -107.50 -2.57 -5.19 15 17 C -0.01 -0.18 5.36 -38.10 -0.20 -0.38 15 18 O -0.31 -5.94 9.14 -18.31 -0.17 -6.11 15 19 C 0.39 6.39 6.35 101.05 0.64 7.03 15 20 F -0.21 -3.88 15.76 2.25 0.04 -3.84 15 21 F -0.21 -3.66 14.72 2.25 0.03 -3.62 15 22 H 0.14 3.21 6.17 -52.49 -0.32 2.88 15 23 H 0.29 5.91 8.30 -40.82 -0.34 5.57 15 24 H 0.12 2.34 8.06 -52.49 -0.42 1.92 15 25 H 0.07 1.21 8.14 97.61 0.79 2.00 15 26 H 0.16 1.80 8.14 -51.93 -0.42 1.37 15 LS Contribution 265.03 15.07 3.99 3.99 Total: -1.00 -24.54 265.03 -4.66 -29.19 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 0.08 Total: 2.74 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.41 Total: -2.18 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 1.38 Total: -25.92 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.17 Total: -6.11 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.07 Total: -7.47 kcal Atomic # 14 Polarization: 15.96 SS G_CDS: -5.03 Total: 10.93 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.57 Total: -5.19 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -24.54 -4.66 -29.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575641934.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.118 kcal (2) G-P(sol) polarization free energy of solvation -24.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds