Wall clock time and date at job start Mon Mar 30 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39109 * 120.04042 * 16.06866 * 3 2 1 5 5 C 1.40525 * 119.79061 * 179.75150 * 4 3 2 6 6 C 1.41269 * 120.05426 * 180.25066 * 5 4 3 7 7 H 1.08002 * 120.00094 * 204.92555 * 6 5 4 8 8 C 1.39826 * 120.00397 * 24.91923 * 6 5 4 9 9 N 1.30909 * 119.99600 * 17.84371 * 8 6 5 10 10 Si 1.86797 * 120.00175 * 197.84524 * 8 6 5 11 11 H 1.48499 * 109.47063 * 90.00100 * 10 8 6 12 12 H 1.48506 * 109.47026 * 209.99861 * 10 8 6 13 13 H 1.48495 * 109.47458 * 330.00066 * 10 8 6 14 14 C 1.40860 * 119.88958 * 0.54552 * 5 4 3 15 15 C 1.37939 * 120.08412 * 359.70378 * 14 5 4 16 16 S 1.76196 * 119.90004 * 180.02562 * 15 14 5 17 17 C 1.39980 * 120.20597 * 0.02562 * 15 14 5 18 18 O 1.35539 * 119.94698 * 180.02562 * 17 15 14 19 19 C 1.42899 * 117.00022 * 269.97475 * 18 17 15 20 20 F 1.39902 * 109.47067 * 300.00022 * 19 18 17 21 21 F 1.39905 * 109.46904 * 59.99743 * 19 18 17 22 22 H 1.08002 * 120.10359 * 359.97438 * 4 3 2 23 23 H 0.97006 * 120.00261 * 179.97438 * 9 8 6 24 24 H 1.08002 * 119.96334 * 179.72790 * 14 5 4 25 25 H 1.34504 * 103.00269 * 270.02286 * 16 15 14 26 26 H 1.09004 * 109.47608 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2649 -1.1562 -0.3333 5 6 4.6702 -1.1483 -0.3367 6 6 5.3835 -2.3185 -0.6795 7 1 6.3898 -2.4636 -0.3152 8 6 4.7867 -3.2889 -1.4902 9 7 3.7372 -2.9843 -2.2110 10 14 5.4869 -5.0198 -1.5446 11 1 4.8365 -5.8499 -0.4991 12 1 5.2303 -5.6158 -2.8804 13 1 6.9503 -4.9699 -1.2976 14 6 5.3663 0.0267 0.0083 15 6 4.6704 1.1697 0.3430 16 16 5.5460 2.6369 0.7731 17 6 3.2706 1.1676 0.3421 18 8 2.5920 2.2937 0.6714 19 6 2.2665 2.4751 2.0510 20 9 1.4655 1.4132 2.4846 21 9 3.4432 2.5104 2.8069 22 1 2.7277 -2.0567 -0.5922 23 1 3.3234 -3.6574 -2.7737 24 1 6.4463 0.0329 0.0103 25 1 5.6966 2.5202 2.1045 26 1 1.7260 3.4133 2.1766 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575641934.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:24 Heat of formation + Delta-G solvation = -111.487818 kcal Electronic energy + Delta-G solvation = -18224.396056 eV Core-core repulsion = 14836.567922 eV Total energy + Delta-G solvation = -3387.828134 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.022 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.02269 -48.17022 -40.56571 -38.29911 -37.43841 -35.43027 -32.24031 -31.44093 -27.84708 -26.14047 -24.55775 -23.28753 -20.64901 -19.78172 -19.06650 -18.81093 -18.29761 -17.92759 -17.13543 -16.61933 -16.37271 -15.51049 -15.07255 -14.93100 -14.82361 -14.52631 -14.29586 -14.19726 -14.04684 -13.65933 -13.55760 -13.31013 -13.08208 -12.86347 -12.56421 -12.36774 -11.95137 -11.79290 -11.37700 -11.08446 -9.72836 -9.54065 -8.96978 -8.81443 -6.50022 -0.02516 0.20176 0.84003 1.39153 1.46304 1.58490 1.65896 1.88991 2.13764 2.18453 2.23062 2.69387 2.76032 3.02928 3.41318 3.76832 3.81021 4.48178 4.57553 4.74653 4.93790 5.01861 5.14058 5.50269 5.66757 5.80148 6.10149 6.31601 6.50965 6.64230 6.68250 8.13409 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.022063 B = 0.006990 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.776533 B = 4004.826633 C = 4878.165997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.286 3.714 3 C -0.022 4.022 4 C -0.106 4.106 5 C 0.084 3.916 6 C -0.454 4.454 7 H 0.102 0.898 8 C 0.038 3.962 9 N -0.806 5.806 10 Si 0.985 3.015 11 H -0.264 1.264 12 H -0.271 1.271 13 H -0.250 1.250 14 C -0.149 4.149 15 C -0.071 4.071 16 S -0.117 6.117 17 C -0.005 4.005 18 O -0.316 6.316 19 C 0.386 3.614 20 F -0.224 7.224 21 F -0.218 7.218 22 H 0.124 0.876 23 H 0.297 0.703 24 H 0.137 0.863 25 H 0.077 0.923 26 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 4.194 4.627 6.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.028 4.028 3 C -0.027 4.027 4 C -0.129 4.129 5 C 0.079 3.921 6 C -0.481 4.481 7 H 0.120 0.880 8 C -0.181 4.181 9 N -0.430 5.430 10 Si 0.806 3.194 11 H -0.189 1.189 12 H -0.196 1.196 13 H -0.173 1.173 14 C -0.171 4.171 15 C -0.183 4.183 16 S 0.040 5.960 17 C -0.055 4.055 18 O -0.235 6.235 19 C 0.298 3.702 20 F -0.206 7.206 21 F -0.200 7.200 22 H 0.142 0.858 23 H 0.109 0.891 24 H 0.154 0.846 25 H 0.041 0.959 26 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.363 5.075 4.361 6.829 hybrid contribution -0.005 -1.949 0.790 2.103 sum 1.358 3.126 5.151 6.177 Atomic orbital electron populations 1.81016 1.12408 1.09384 1.10980 1.25840 0.92854 0.91980 0.92097 1.16199 0.83523 0.95260 1.07753 1.21465 0.94811 0.95322 1.01255 1.17814 0.91246 0.92983 0.90048 1.20026 1.02179 1.00866 1.25032 0.87982 1.26859 0.94260 1.04785 0.92208 1.69828 1.18369 1.37443 1.17324 0.85109 0.80230 0.75478 0.78607 1.18871 1.19588 1.17271 1.21628 0.99667 0.90313 1.05521 1.21081 0.93024 0.97090 1.07141 1.85326 1.73158 1.27103 1.10394 1.17902 0.88947 0.85883 1.12776 1.86604 1.73526 1.39812 1.23585 1.24533 0.77790 0.90910 0.77010 1.93037 1.74293 1.63240 1.90030 1.93013 1.52248 1.97051 1.77727 0.85789 0.89149 0.84566 0.95894 0.76680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.47 18.54 19.00 0.35 -20.12 15 2 C 0.29 12.65 13.51 88.33 1.19 13.84 15 3 C -0.02 -0.96 5.61 -21.29 -0.12 -1.08 15 4 C -0.11 -4.93 8.38 23.04 0.19 -4.74 15 5 C 0.08 3.83 5.57 -21.33 -0.12 3.71 15 6 C -0.45 -20.02 9.03 23.40 0.21 -19.81 15 7 H 0.10 4.16 7.91 -2.91 -0.02 4.14 15 8 C 0.04 1.59 5.13 85.21 0.44 2.02 15 9 N -0.81 -36.49 10.97 21.81 0.24 -36.25 15 10 Si 0.99 32.27 29.59 68.60 2.03 34.30 15 11 H -0.26 -8.60 7.11 99.48 0.71 -7.90 15 12 H -0.27 -8.69 7.11 99.48 0.71 -7.98 15 13 H -0.25 -7.79 7.11 99.48 0.71 -7.08 15 14 C -0.15 -6.17 9.49 22.84 0.22 -5.95 15 15 C -0.07 -2.85 5.93 22.62 0.13 -2.72 15 16 S -0.12 -3.94 23.93 -56.49 -1.35 -5.29 15 17 C -0.01 -0.23 5.36 23.23 0.12 -0.10 15 18 O -0.32 -11.70 9.14 -88.44 -0.81 -12.51 15 19 C 0.39 11.63 6.35 113.37 0.72 12.35 15 20 F -0.22 -7.92 15.76 44.97 0.71 -7.21 15 21 F -0.22 -6.91 14.72 44.97 0.66 -6.24 15 22 H 0.12 6.01 6.17 -2.91 -0.02 6.00 15 23 H 0.30 12.22 8.30 -92.70 -0.77 11.46 15 24 H 0.14 5.11 8.06 -2.91 -0.02 5.08 15 25 H 0.08 2.45 8.14 73.35 0.60 3.05 15 26 H 0.22 3.99 8.14 -2.39 -0.02 3.97 15 Total: -1.00 -51.75 265.03 6.69 -45.06 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.86 Total: 10.73 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 2.99 Total: -2.47 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.59 Total: -56.37 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.81 Total: -12.51 kcal Atomic # 9 Polarization: -14.83 SS G_CDS: 1.37 Total: -13.46 kcal Atomic # 14 Polarization: 32.27 SS G_CDS: 2.03 Total: 34.30 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -1.35 Total: -5.29 kcal Total: -51.75 6.69 -45.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575641934.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.425 kcal (2) G-P(sol) polarization free energy of solvation -51.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds