Wall clock time and date at job start Mon Mar 30 2020 07:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35695 * 117.00308 * 2 1 4 4 C 1.40004 * 120.05254 * 270.29099 * 3 2 1 5 5 C 1.43206 * 120.60490 * 359.97438 * 4 3 2 6 6 N 3.54182 * 95.63510 * 281.79236 * 2 1 3 7 7 C 1.46518 * 118.79033 * 180.24260 * 4 3 2 8 8 C 1.40776 * 120.58551 * 179.72204 * 7 4 3 9 9 H 1.07996 * 120.00377 * 23.88409 * 8 7 4 10 10 C 1.40248 * 119.99441 * 204.16030 * 8 7 4 11 11 N 1.30647 * 120.00421 * 17.72699 * 10 8 7 12 12 Si 1.86804 * 119.99747 * 197.73436 * 10 8 7 13 13 H 1.48496 * 109.47600 * 59.99645 * 12 10 8 14 14 H 1.48494 * 109.47292 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46658 * 299.99624 * 12 10 8 16 16 C 1.40793 * 118.82574 * 359.45096 * 7 4 3 17 17 C 1.37545 * 119.98313 * 0.27389 * 16 7 4 18 18 C 1.38502 * 121.27676 * 0.02562 * 17 16 7 19 19 C 1.50703 * 119.39007 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.46913 * 0.02562 * 19 18 17 21 21 F 1.39897 * 109.47567 * 119.99938 * 19 18 17 22 22 F 1.39896 * 109.47400 * 240.00231 * 19 18 17 23 23 H 1.08993 * 109.47320 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46975 * 299.99809 * 1 2 3 25 25 H 1.08996 * 109.47214 * 59.99418 * 1 2 3 26 26 H 0.97008 * 120.00398 * 180.02562 * 11 10 8 27 27 H 1.07999 * 120.01227 * 180.29159 * 16 7 4 28 28 H 1.07999 * 119.36473 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 2.3579 1.8365 -1.2118 5 6 2.0342 1.2139 -2.4601 6 7 1.7768 0.7203 -3.4503 7 6 3.0280 3.1391 -1.1796 8 6 3.3653 3.8009 -2.3754 9 1 2.8247 3.5825 -3.2845 10 6 4.4071 4.7397 -2.3874 11 7 5.2811 4.7582 -1.4164 12 14 4.5452 5.9638 -3.7917 13 1 3.3146 6.7929 -3.8485 14 1 5.7233 6.8402 -3.5704 15 1 4.7079 5.2309 -5.0729 16 6 3.3234 3.7198 0.0685 17 6 2.9884 3.0622 1.2292 18 6 2.3606 1.8279 1.2008 19 6 2.0132 1.1448 2.4984 20 9 2.4201 1.9461 3.5707 21 9 0.6301 0.9452 2.5647 22 9 2.6664 -0.0905 2.5646 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 6.0015 5.4078 -1.4245 27 1 3.8127 4.6815 0.1146 28 1 3.2201 3.5166 2.1811 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575645218.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:00 Heat of formation + Delta-G solvation = -150.753659 kcal Electronic energy + Delta-G solvation = -20695.892674 eV Core-core repulsion = 16875.981764 eV Total energy + Delta-G solvation = -3819.910910 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.056 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.43029 -47.00933 -46.85290 -39.03166 -36.70099 -35.26443 -34.21673 -30.95306 -29.55152 -27.22096 -26.51073 -23.96767 -22.54739 -21.07814 -18.59962 -18.01476 -17.79777 -17.72155 -16.22496 -15.84898 -15.78054 -15.05327 -14.83593 -13.96720 -13.95153 -13.66501 -13.49383 -13.22274 -13.09797 -12.96362 -12.72698 -12.58493 -12.37974 -11.94656 -11.75217 -11.61571 -11.49442 -11.32639 -10.96257 -10.76930 -10.38650 -10.29860 -9.74748 -9.41270 -8.09469 -7.83714 -7.45587 -5.10525 1.87282 2.04045 2.77003 2.79296 2.82891 3.48766 3.49844 3.78281 3.80497 4.13945 4.35026 4.72061 4.85997 4.98247 5.24396 5.34117 5.68562 5.73574 5.95756 6.01385 6.34932 6.47078 6.48604 6.58558 6.96659 7.17937 7.35655 7.46959 7.82766 7.99855 8.12713 8.26510 8.67304 9.43581 Molecular weight = 271.06amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.006961 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.056345 B = 4021.272045 C = 4954.613695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.345 6.345 3 C 0.232 3.768 4 C -0.200 4.200 5 C 0.304 3.696 6 N -0.495 5.495 7 C 0.163 3.837 8 C -0.404 4.404 9 H 0.093 0.907 10 C 0.073 3.927 11 N -0.743 5.743 12 Si 0.923 3.077 13 H -0.255 1.255 14 H -0.270 1.270 15 H -0.258 1.258 16 C -0.168 4.168 17 C -0.034 4.034 18 C -0.340 4.340 19 C 0.523 3.477 20 F -0.190 7.190 21 F -0.193 7.193 22 F -0.185 7.185 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.042 0.958 26 H 0.298 0.702 27 H 0.135 0.865 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 1.509 5.039 5.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.262 6.262 3 C 0.185 3.815 4 C -0.207 4.207 5 C -0.006 4.006 6 N -0.173 5.173 7 C 0.157 3.843 8 C -0.429 4.429 9 H 0.111 0.889 10 C -0.154 4.154 11 N -0.363 5.363 12 Si 0.745 3.255 13 H -0.178 1.178 14 H -0.194 1.194 15 H -0.182 1.182 16 C -0.187 4.187 17 C -0.053 4.053 18 C -0.344 4.344 19 C 0.469 3.531 20 F -0.172 7.172 21 F -0.174 7.174 22 F -0.167 7.167 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.153 0.847 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.905 0.657 3.631 4.696 hybrid contribution 0.158 0.677 0.126 0.706 sum -2.747 1.334 3.757 4.842 Atomic orbital electron populations 1.23122 0.78845 1.02783 1.01397 1.85871 1.19868 1.25898 1.94552 1.17835 0.90883 0.82466 0.90310 1.17013 1.21506 0.97259 0.84876 1.25314 0.91464 0.91547 0.92293 1.81017 1.13713 1.11155 1.11443 1.18412 0.85708 0.86485 0.93683 1.19953 1.11586 1.14860 0.96517 0.88888 1.26250 0.93914 0.97102 0.98094 1.69693 1.08158 1.28766 1.29702 0.86065 0.79526 0.79419 0.80506 1.17848 1.19426 1.18166 1.21215 1.05773 1.01496 0.90174 1.20350 0.94450 0.91830 0.98688 1.19133 1.24274 1.01733 0.89225 1.18224 0.73560 0.76328 0.84986 1.93071 1.90532 1.73939 1.59652 1.93051 1.32346 1.95349 1.96681 1.93160 1.81216 1.45440 1.96841 0.89512 0.92116 0.93919 0.89034 0.84706 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.74 101.05 1.08 1.63 15 2 O -0.34 -7.11 8.90 -18.79 -0.17 -7.27 15 3 C 0.23 5.02 5.60 -38.74 -0.22 4.80 15 4 C -0.20 -4.59 5.96 -103.97 -0.62 -5.20 15 5 C 0.30 7.11 13.85 -22.47 -0.31 6.80 15 6 N -0.49 -11.77 18.54 41.83 0.78 -10.99 15 7 C 0.16 3.74 5.74 -104.64 -0.60 3.14 15 8 C -0.40 -9.13 8.59 -37.87 -0.33 -9.46 15 9 H 0.09 2.11 7.37 -52.49 -0.39 1.73 15 10 C 0.07 1.50 5.15 -17.30 -0.09 1.41 15 11 N -0.74 -15.57 10.96 55.56 0.61 -14.96 15 12 Si 0.92 15.64 29.60 -169.99 -5.03 10.60 15 13 H -0.25 -4.28 7.11 56.52 0.40 -3.88 15 14 H -0.27 -4.37 7.11 56.52 0.40 -3.97 15 15 H -0.26 -4.50 7.11 56.52 0.40 -4.09 15 16 C -0.17 -3.59 8.70 -38.87 -0.34 -3.93 15 17 C -0.03 -0.68 9.35 -39.74 -0.37 -1.05 15 18 C -0.34 -7.01 5.40 -104.34 -0.56 -7.58 15 19 C 0.52 9.91 2.97 36.01 0.11 10.01 15 20 F -0.19 -3.39 15.89 2.25 0.04 -3.36 15 21 F -0.19 -3.45 14.18 2.25 0.03 -3.42 15 22 F -0.19 -3.63 16.90 2.25 0.04 -3.59 15 23 H 0.09 1.21 8.14 -51.93 -0.42 0.78 15 24 H 0.06 0.96 5.57 -51.92 -0.29 0.67 15 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 15 26 H 0.30 5.53 8.29 -40.82 -0.34 5.19 15 27 H 0.14 2.85 6.17 -52.49 -0.32 2.53 15 28 H 0.11 2.02 7.06 -52.49 -0.37 1.65 15 LS Contribution 269.07 15.07 4.05 4.05 Total: -1.00 -24.21 269.07 -3.25 -27.45 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -1.35 Total: 0.90 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -2.24 Total: 0.58 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 1.38 Total: -25.95 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.17 Total: -7.27 kcal Atomic # 9 Polarization: -10.47 SS G_CDS: 0.11 Total: -10.37 kcal Atomic # 14 Polarization: 15.64 SS G_CDS: -5.03 Total: 10.60 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -24.21 -3.25 -27.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645218.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.300 kcal (2) G-P(sol) polarization free energy of solvation -24.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds