Wall clock time and date at job start Mon Mar 30 2020 07:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35695 * 117.00308 * 2 1 4 4 C 1.40004 * 120.05254 * 270.29099 * 3 2 1 5 5 C 1.43206 * 120.60490 * 359.97438 * 4 3 2 6 6 N 3.54182 * 95.63510 * 281.79236 * 2 1 3 7 7 C 1.46518 * 118.79033 * 180.24260 * 4 3 2 8 8 C 1.40776 * 120.58551 * 179.72204 * 7 4 3 9 9 H 1.07996 * 120.00377 * 23.88409 * 8 7 4 10 10 C 1.40248 * 119.99441 * 204.16030 * 8 7 4 11 11 N 1.30647 * 120.00421 * 17.72699 * 10 8 7 12 12 Si 1.86804 * 119.99747 * 197.73436 * 10 8 7 13 13 H 1.48496 * 109.47600 * 59.99645 * 12 10 8 14 14 H 1.48494 * 109.47292 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46658 * 299.99624 * 12 10 8 16 16 C 1.40793 * 118.82574 * 359.45096 * 7 4 3 17 17 C 1.37545 * 119.98313 * 0.27389 * 16 7 4 18 18 C 1.38502 * 121.27676 * 0.02562 * 17 16 7 19 19 C 1.50703 * 119.39007 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.46913 * 0.02562 * 19 18 17 21 21 F 1.39897 * 109.47567 * 119.99938 * 19 18 17 22 22 F 1.39896 * 109.47400 * 240.00231 * 19 18 17 23 23 H 1.08993 * 109.47320 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46975 * 299.99809 * 1 2 3 25 25 H 1.08996 * 109.47214 * 59.99418 * 1 2 3 26 26 H 0.97008 * 120.00398 * 180.02562 * 11 10 8 27 27 H 1.07999 * 120.01227 * 180.29159 * 16 7 4 28 28 H 1.07999 * 119.36473 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 2.3579 1.8365 -1.2118 5 6 2.0342 1.2139 -2.4601 6 7 1.7768 0.7203 -3.4503 7 6 3.0280 3.1391 -1.1796 8 6 3.3653 3.8009 -2.3754 9 1 2.8247 3.5825 -3.2845 10 6 4.4071 4.7397 -2.3874 11 7 5.2811 4.7582 -1.4164 12 14 4.5452 5.9638 -3.7917 13 1 3.3146 6.7929 -3.8485 14 1 5.7233 6.8402 -3.5704 15 1 4.7079 5.2309 -5.0729 16 6 3.3234 3.7198 0.0685 17 6 2.9884 3.0622 1.2292 18 6 2.3606 1.8279 1.2008 19 6 2.0132 1.1448 2.4984 20 9 2.4201 1.9461 3.5707 21 9 0.6301 0.9452 2.5647 22 9 2.6664 -0.0905 2.5646 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 6.0015 5.4078 -1.4245 27 1 3.8127 4.6815 0.1146 28 1 3.2201 3.5166 2.1811 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645218.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:00 Heat of formation + Delta-G solvation = -161.892676 kcal Electronic energy + Delta-G solvation = -20696.375698 eV Core-core repulsion = 16875.981764 eV Total energy + Delta-G solvation = -3820.393934 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.92585 -48.47342 -48.37096 -40.64934 -38.31489 -37.08194 -35.82478 -32.61117 -31.17716 -28.85391 -27.93973 -25.54311 -24.21737 -22.69348 -20.22217 -19.62172 -19.30105 -19.24610 -17.84661 -17.45262 -17.33802 -16.56848 -16.38369 -15.47396 -15.43204 -15.14383 -14.97604 -14.74266 -14.58719 -14.52213 -14.44305 -14.28060 -13.95774 -13.64934 -13.41016 -13.13523 -13.00905 -12.84546 -12.49922 -12.21572 -11.94639 -11.89592 -11.28894 -10.96335 -9.77524 -9.50673 -9.03038 -6.80865 0.18516 0.42656 1.37174 1.44573 1.50950 1.89009 2.03612 2.10013 2.16671 2.44474 2.76238 3.11909 3.27359 3.35605 3.59866 3.75251 4.31874 4.43042 4.46880 4.66670 4.71999 4.82242 4.86393 4.97486 5.30421 5.53737 5.68463 5.81125 6.17935 6.33978 6.46808 6.61764 6.86437 7.90110 Molecular weight = 271.06amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.006961 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.056345 B = 4021.272045 C = 4954.613695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.233 3.767 4 C -0.228 4.228 5 C 0.308 3.692 6 N -0.514 5.514 7 C 0.145 3.855 8 C -0.426 4.426 9 H 0.082 0.918 10 C 0.045 3.955 11 N -0.760 5.760 12 Si 0.986 3.014 13 H -0.252 1.252 14 H -0.252 1.252 15 H -0.267 1.267 16 C -0.176 4.176 17 C -0.027 4.027 18 C -0.347 4.347 19 C 0.529 3.471 20 F -0.181 7.181 21 F -0.185 7.185 22 F -0.188 7.188 23 H 0.116 0.884 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.311 0.689 27 H 0.136 0.864 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 2.255 5.699 6.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.186 3.814 4 C -0.234 4.234 5 C -0.001 4.001 6 N -0.193 5.193 7 C 0.139 3.861 8 C -0.452 4.452 9 H 0.100 0.900 10 C -0.180 4.180 11 N -0.380 5.380 12 Si 0.805 3.195 13 H -0.176 1.176 14 H -0.176 1.176 15 H -0.192 1.192 16 C -0.195 4.195 17 C -0.046 4.046 18 C -0.350 4.350 19 C 0.476 3.524 20 F -0.163 7.163 21 F -0.166 7.166 22 F -0.170 7.170 23 H 0.134 0.866 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.123 0.877 27 H 0.154 0.846 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.790 1.392 4.317 5.326 hybrid contribution 0.109 0.406 -0.012 0.420 sum -2.682 1.798 4.305 5.381 Atomic orbital electron populations 1.23360 0.76763 1.04834 1.01560 1.85835 1.21855 1.25429 1.94605 1.17949 0.90575 0.82591 0.90292 1.17185 1.23199 0.97930 0.85091 1.25516 0.91049 0.91199 0.92365 1.80988 1.14720 1.11855 1.11770 1.18683 0.86135 0.86709 0.94546 1.20114 1.12588 1.16278 0.96174 0.90000 1.26907 0.92951 0.97882 1.00289 1.69666 1.08392 1.29295 1.30675 0.85153 0.80108 0.77280 0.76998 1.17559 1.17550 1.19160 1.21242 1.06379 1.01747 0.90161 1.20584 0.93242 0.91487 0.99298 1.19344 1.23955 1.01947 0.89734 1.17940 0.73850 0.76116 0.84524 1.93090 1.90479 1.73654 1.59039 1.93063 1.31668 1.95286 1.96632 1.93155 1.81371 1.45630 1.96833 0.86615 0.91306 0.94350 0.87697 0.84599 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.74 113.37 1.22 2.11 15 2 O -0.36 -14.52 8.90 -90.14 -0.80 -15.32 15 3 C 0.23 9.98 5.60 22.82 0.13 10.11 15 4 C -0.23 -10.52 5.96 -19.44 -0.12 -10.64 15 5 C 0.31 14.64 13.85 88.33 1.22 15.86 15 6 N -0.51 -24.78 18.54 19.00 0.35 -24.42 15 7 C 0.15 6.72 5.74 -19.87 -0.11 6.61 15 8 C -0.43 -19.50 8.59 23.38 0.20 -19.30 15 9 H 0.08 3.82 7.37 -2.91 -0.02 3.80 15 10 C 0.04 1.81 5.15 85.36 0.44 2.25 15 11 N -0.76 -31.14 10.96 21.88 0.24 -30.90 15 12 Si 0.99 31.10 29.60 68.60 2.03 33.13 15 13 H -0.25 -7.79 7.11 99.48 0.71 -7.09 15 14 H -0.25 -7.19 7.11 99.48 0.71 -6.48 15 15 H -0.27 -8.79 7.11 99.48 0.71 -8.08 15 16 C -0.18 -7.48 8.70 22.73 0.20 -7.29 15 17 C -0.03 -1.04 9.35 22.17 0.21 -0.84 15 18 C -0.35 -13.84 5.40 -19.68 -0.11 -13.95 15 19 C 0.53 19.02 2.97 71.24 0.21 19.23 15 20 F -0.18 -6.00 15.89 44.97 0.71 -5.29 15 21 F -0.19 -6.22 14.18 44.97 0.64 -5.59 15 22 F -0.19 -7.05 16.90 44.97 0.76 -6.29 15 23 H 0.12 2.97 8.14 -2.39 -0.02 2.95 15 24 H 0.07 2.07 5.57 -2.38 -0.01 2.05 15 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 15 26 H 0.31 11.06 8.29 -92.70 -0.77 10.29 15 27 H 0.14 5.67 6.17 -2.91 -0.02 5.65 15 28 H 0.14 4.59 7.06 -2.91 -0.02 4.57 15 Total: -1.00 -50.29 269.07 8.66 -41.63 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.24 Total: 8.89 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 3.49 Total: 4.16 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.59 Total: -55.32 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.80 Total: -15.32 kcal Atomic # 9 Polarization: -19.28 SS G_CDS: 2.11 Total: -17.17 kcal Atomic # 14 Polarization: 31.10 SS G_CDS: 2.03 Total: 33.13 kcal Total: -50.29 8.66 -41.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645218.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.260 kcal (2) G-P(sol) polarization free energy of solvation -50.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds