Wall clock time and date at job start Mon Mar 30 2020 07:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47136 * 2 1 4 4 C 1.50704 * 109.47067 * 240.00321 * 2 1 3 5 5 H 1.08000 * 119.99703 * 240.00467 * 4 2 1 6 6 C 1.37871 * 120.00359 * 59.99979 * 4 2 1 7 7 N 1.31515 * 119.99950 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00316 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46858 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47214 * 120.00069 * 8 6 4 11 11 H 1.48504 * 109.46929 * 239.99965 * 8 6 4 12 12 C 1.50703 * 109.47036 * 120.00368 * 2 1 3 13 13 O 1.21299 * 119.99958 * 120.00222 * 12 2 1 14 14 N 1.34774 * 119.99787 * 299.99521 * 12 2 1 15 15 C 1.40222 * 119.99989 * 185.52618 * 14 12 2 16 16 C 1.38788 * 120.01425 * 24.81917 * 15 14 12 17 17 C 1.38164 * 120.04279 * 180.29085 * 16 15 14 18 18 C 1.38662 * 120.06787 * 359.45573 * 17 16 15 19 19 O 1.36021 * 119.98267 * 180.27078 * 18 17 16 20 20 C 1.38870 * 120.03412 * 0.54431 * 18 17 16 21 21 F 1.35099 * 120.02413 * 179.74840 * 20 18 17 22 22 C 1.38432 * 119.95821 * 359.72732 * 20 18 17 23 23 F 1.35096 * 120.03879 * 180.02562 * 22 20 18 24 24 H 1.08998 * 109.47533 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47616 * 299.99693 * 1 2 3 26 26 H 1.09004 * 109.47152 * 60.00255 * 1 2 3 27 27 H 0.96999 * 120.00149 * 180.02562 * 7 6 4 28 28 H 0.97003 * 120.00038 * 5.53844 * 14 12 2 29 29 H 1.07997 * 119.97905 * 0.02562 * 16 15 14 30 30 H 1.07994 * 119.96270 * 179.72140 * 17 16 15 31 31 H 0.96692 * 114.00476 * 270.27196 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2869 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 6 2.0323 -0.7105 1.2304 13 8 2.7297 -1.6967 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.2666 -0.8394 3.5971 16 6 3.4840 -1.5003 3.5116 17 6 4.0333 -2.0864 4.6357 18 6 3.3750 -2.0057 5.8534 19 8 3.9200 -2.5786 6.9601 20 6 2.1567 -1.3451 5.9424 21 9 1.5130 -1.2710 7.1279 22 6 1.6024 -0.7623 4.8157 23 9 0.4176 -0.1188 4.9006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7081 1.1609 -3.4844 28 1 1.0850 0.4890 2.5452 29 1 4.0002 -1.5602 2.5649 30 1 4.9785 -2.6042 4.5668 31 1 3.6554 -3.4984 7.0978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597750151.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:06 Heat of formation + Delta-G solvation = -142.471985 kcal Electronic energy + Delta-G solvation = -20382.855376 eV Core-core repulsion = 16686.763892 eV Total energy + Delta-G solvation = -3696.091485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.48711 -48.56803 -40.27208 -38.88319 -36.73369 -34.08801 -33.90302 -30.77272 -30.41957 -28.41742 -25.28811 -23.84984 -23.16920 -22.12907 -19.79564 -18.99103 -18.17704 -17.57593 -16.99577 -16.42745 -16.30291 -15.77206 -15.45966 -15.11251 -14.80344 -14.63739 -14.47899 -14.25250 -13.58268 -13.36663 -12.77357 -12.61023 -12.21759 -12.11132 -11.65390 -11.15417 -10.98512 -10.84968 -10.78146 -10.44811 -10.17508 -10.09608 -9.12840 -8.99030 -8.78667 -8.48564 -7.98734 -6.15752 -4.20535 0.81208 0.84813 2.99061 3.15925 3.25467 3.33796 3.41307 3.52762 3.63246 4.06832 4.30146 4.36671 4.64918 4.81265 5.17980 5.20534 5.48529 5.75043 5.91092 6.00496 6.13379 6.35594 6.46418 6.65136 6.73907 6.82204 7.27224 7.35056 7.56007 7.70612 7.91696 8.13937 8.72682 8.88626 9.45897 10.91814 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.036265 B = 0.004471 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.910646 B = 6261.040528 C = 6923.715535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.032 3.968 3 H 0.061 0.939 4 C -0.506 4.506 5 H 0.077 0.923 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.902 3.098 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.523 3.477 13 O -0.516 6.516 14 N -0.679 5.679 15 C 0.163 3.837 16 C -0.107 4.107 17 C -0.099 4.099 18 C 0.064 3.936 19 O -0.484 6.484 20 C 0.063 3.937 21 F -0.124 7.124 22 C 0.032 3.968 23 F -0.125 7.125 24 H 0.034 0.966 25 H 0.014 0.986 26 H 0.098 0.902 27 H 0.262 0.738 28 H 0.414 0.586 29 H 0.170 0.830 30 H 0.148 0.852 31 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 -3.234 14.336 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 H 0.078 0.922 4 C -0.545 4.545 5 H 0.095 0.905 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.315 3.685 13 O -0.389 6.389 14 N -0.323 5.323 15 C 0.064 3.936 16 C -0.127 4.127 17 C -0.118 4.118 18 C 0.017 3.983 19 O -0.293 6.293 20 C 0.042 3.958 21 F -0.102 7.102 22 C 0.008 3.992 23 F -0.104 7.104 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.251 0.749 29 H 0.188 0.812 30 H 0.165 0.835 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.903 -3.223 14.099 14.751 hybrid contribution -0.749 -0.309 -0.439 0.922 sum 2.154 -3.532 13.660 14.273 Atomic orbital electron populations 1.21803 0.96094 1.00223 1.01385 1.18968 0.94510 0.97053 0.88351 0.92169 1.21122 1.31569 1.13073 0.88720 0.90511 1.24949 0.94921 0.94995 0.99230 1.69867 1.36686 1.22951 1.23754 0.86357 0.78659 0.79746 0.82271 1.19498 1.20963 1.20951 1.22485 0.78382 0.83912 0.83749 1.90503 1.36869 1.25498 1.86043 1.44260 1.47339 1.36459 1.04280 1.17867 0.92755 0.97282 0.85678 1.21467 0.92992 0.97482 1.00769 1.21317 1.00721 0.99878 0.89865 1.18070 0.91276 1.01175 0.87771 1.84904 1.70825 1.31346 1.42273 1.17726 0.92678 1.04562 0.80834 1.91502 1.80821 1.94686 1.43240 1.17160 0.84949 1.03823 0.93218 1.91501 1.42841 1.79322 1.96747 0.94664 0.96744 0.88378 0.92788 0.74878 0.81238 0.83452 0.75411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.86 37.16 0.33 -2.64 16 2 C 0.03 0.74 2.65 -92.92 -0.25 0.50 16 3 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 4 C -0.51 -13.45 8.37 -34.44 -0.29 -13.74 16 5 H 0.08 2.13 6.75 -52.49 -0.35 1.78 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -23.98 11.32 55.43 0.63 -23.35 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 C 0.52 10.87 6.96 -10.99 -0.08 10.79 16 13 O -0.52 -11.76 12.63 5.54 0.07 -11.69 16 14 N -0.68 -11.50 5.24 -9.77 -0.05 -11.55 16 15 C 0.16 2.57 6.44 -83.53 -0.54 2.03 16 16 C -0.11 -1.58 8.72 -39.41 -0.34 -1.92 16 17 C -0.10 -1.19 9.98 -39.45 -0.39 -1.58 16 18 C 0.06 0.79 6.71 -39.19 -0.26 0.53 16 19 O -0.48 -5.08 13.37 -19.81 -0.26 -5.34 16 20 C 0.06 0.88 7.31 -39.28 -0.29 0.59 16 21 F -0.12 -1.77 17.02 2.25 0.04 -1.73 16 22 C 0.03 0.48 7.31 -39.23 -0.29 0.19 16 23 F -0.13 -1.90 16.72 2.25 0.04 -1.87 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.01 0.25 7.45 -51.93 -0.39 -0.14 16 26 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.41 6.20 7.72 -40.82 -0.32 5.89 16 29 H 0.17 2.79 5.78 -52.49 -0.30 2.49 16 30 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.39 2.19 9.06 45.56 0.41 2.60 16 LS Contribution 281.25 15.07 4.24 4.24 Total: -1.00 -29.45 281.25 -4.48 -33.93 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -1.67 Total: 5.32 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.49 Total: -3.75 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.58 Total: -34.90 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.19 Total: -17.04 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.60 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.45 -4.48 -33.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597750151.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.541 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds