Wall clock time and date at job start Mon Mar 30 2020 07:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47136 * 2 1 4 4 C 1.50704 * 109.47067 * 240.00321 * 2 1 3 5 5 H 1.08000 * 119.99703 * 240.00467 * 4 2 1 6 6 C 1.37871 * 120.00359 * 59.99979 * 4 2 1 7 7 N 1.31515 * 119.99950 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00316 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46858 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47214 * 120.00069 * 8 6 4 11 11 H 1.48504 * 109.46929 * 239.99965 * 8 6 4 12 12 C 1.50703 * 109.47036 * 120.00368 * 2 1 3 13 13 O 1.21299 * 119.99958 * 120.00222 * 12 2 1 14 14 N 1.34774 * 119.99787 * 299.99521 * 12 2 1 15 15 C 1.40222 * 119.99989 * 185.52618 * 14 12 2 16 16 C 1.38788 * 120.01425 * 24.81917 * 15 14 12 17 17 C 1.38164 * 120.04279 * 180.29085 * 16 15 14 18 18 C 1.38662 * 120.06787 * 359.45573 * 17 16 15 19 19 O 1.36021 * 119.98267 * 180.27078 * 18 17 16 20 20 C 1.38870 * 120.03412 * 0.54431 * 18 17 16 21 21 F 1.35099 * 120.02413 * 179.74840 * 20 18 17 22 22 C 1.38432 * 119.95821 * 359.72732 * 20 18 17 23 23 F 1.35096 * 120.03879 * 180.02562 * 22 20 18 24 24 H 1.08998 * 109.47533 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47616 * 299.99693 * 1 2 3 26 26 H 1.09004 * 109.47152 * 60.00255 * 1 2 3 27 27 H 0.96999 * 120.00149 * 180.02562 * 7 6 4 28 28 H 0.97003 * 120.00038 * 5.53844 * 14 12 2 29 29 H 1.07997 * 119.97905 * 0.02562 * 16 15 14 30 30 H 1.07994 * 119.96270 * 179.72140 * 17 16 15 31 31 H 0.96692 * 114.00476 * 270.27196 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2869 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 6 2.0323 -0.7105 1.2304 13 8 2.7297 -1.6967 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.2666 -0.8394 3.5971 16 6 3.4840 -1.5003 3.5116 17 6 4.0333 -2.0864 4.6357 18 6 3.3750 -2.0057 5.8534 19 8 3.9200 -2.5786 6.9601 20 6 2.1567 -1.3451 5.9424 21 9 1.5130 -1.2710 7.1279 22 6 1.6024 -0.7623 4.8157 23 9 0.4176 -0.1188 4.9006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7081 1.1609 -3.4844 28 1 1.0850 0.4890 2.5452 29 1 4.0002 -1.5602 2.5649 30 1 4.9785 -2.6042 4.5668 31 1 3.6554 -3.4984 7.0978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597750151.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:06 Heat of formation + Delta-G solvation = -162.686270 kcal Electronic energy + Delta-G solvation = -20383.731934 eV Core-core repulsion = 16686.763892 eV Total energy + Delta-G solvation = -3696.968042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.62135 -49.70462 -41.62768 -40.08260 -37.86259 -35.86402 -35.37680 -32.60868 -31.51874 -29.65289 -27.23379 -25.29192 -24.31458 -23.54557 -21.31647 -20.02454 -19.43601 -18.77738 -18.26807 -18.16722 -17.53093 -17.14811 -16.80836 -16.43034 -16.26637 -15.96547 -15.78812 -15.43596 -15.08435 -14.72666 -14.48984 -13.74330 -13.61171 -13.41817 -13.15592 -12.97138 -12.68414 -12.60565 -12.25879 -12.04645 -11.88721 -11.46653 -11.06408 -10.66299 -10.40326 -9.94301 -9.19819 -8.16378 -6.27241 -0.28510 -0.25312 1.41868 1.44950 1.56654 1.59798 1.83859 2.25904 2.44352 2.52639 3.08971 3.14637 3.18978 3.61795 3.68990 3.94129 4.35322 4.44825 4.69253 4.82734 4.87525 4.87745 4.97353 5.02509 5.19985 5.43651 5.61139 5.72328 5.87753 6.12215 6.40043 6.65521 6.81467 7.14654 7.42124 8.89802 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.036265 B = 0.004471 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.910646 B = 6261.040528 C = 6923.715535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.027 3.973 3 H 0.051 0.949 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.530 3.470 13 O -0.542 6.542 14 N -0.668 5.668 15 C 0.139 3.861 16 C -0.112 4.112 17 C -0.084 4.084 18 C 0.089 3.911 19 O -0.486 6.486 20 C 0.054 3.946 21 F -0.126 7.126 22 C 0.033 3.967 23 F -0.130 7.130 24 H 0.026 0.974 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.265 0.735 28 H 0.423 0.577 29 H 0.153 0.847 30 H 0.179 0.821 31 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 -3.939 15.692 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.006 3.994 3 H 0.069 0.931 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.783 3.217 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.321 3.679 13 O -0.418 6.418 14 N -0.313 5.313 15 C 0.042 3.958 16 C -0.133 4.133 17 C -0.103 4.103 18 C 0.041 3.959 19 O -0.299 6.299 20 C 0.033 3.967 21 F -0.105 7.105 22 C 0.009 3.991 23 F -0.108 7.108 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.261 0.739 29 H 0.170 0.830 30 H 0.196 0.804 31 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 3.470 -3.930 15.505 16.367 hybrid contribution -0.877 -0.127 -0.694 1.126 sum 2.593 -4.057 14.811 15.574 Atomic orbital electron populations 1.21630 0.95033 0.99810 1.01944 1.18869 0.95388 0.96367 0.88799 0.93121 1.21287 1.31797 1.12913 0.90568 0.92463 1.25589 0.95114 0.95671 1.01517 1.69951 1.37098 1.23622 1.24369 0.85514 0.78238 0.78637 0.79335 1.19992 1.20327 1.20219 1.21849 0.78208 0.83470 0.84377 1.90490 1.38120 1.26561 1.86653 1.43810 1.47222 1.36540 1.03697 1.17923 0.93650 0.98927 0.85333 1.21397 0.92852 0.97902 1.01117 1.21529 1.01418 0.98682 0.88638 1.18039 0.89990 0.99661 0.88174 1.84851 1.70541 1.33361 1.41188 1.17868 0.93361 1.05036 0.80449 1.91498 1.81003 1.94758 1.43230 1.17154 0.84809 1.03886 0.93217 1.91487 1.43110 1.79458 1.96768 0.95431 0.93206 0.90700 0.92580 0.73900 0.82995 0.80366 0.72379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.86 71.98 0.64 -4.84 16 2 C 0.03 1.26 2.65 -12.29 -0.03 1.23 16 3 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 4 C -0.53 -28.58 8.37 25.60 0.21 -28.36 16 5 H 0.06 3.27 6.75 -2.91 -0.02 3.25 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -49.24 11.32 21.45 0.24 -49.00 16 8 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.53 22.26 6.96 87.66 0.61 22.87 16 13 O -0.54 -25.18 12.63 -3.09 -0.04 -25.22 16 14 N -0.67 -22.42 5.24 -303.22 -1.59 -24.01 16 15 C 0.14 4.26 6.44 38.11 0.25 4.51 16 16 C -0.11 -3.20 8.72 22.38 0.20 -3.00 16 17 C -0.08 -1.78 9.98 22.35 0.22 -1.56 16 18 C 0.09 1.90 6.71 22.52 0.15 2.05 16 19 O -0.49 -8.27 13.37 -93.79 -1.25 -9.52 16 20 C 0.05 1.39 7.31 22.47 0.16 1.55 16 21 F -0.13 -3.34 17.02 44.97 0.77 -2.58 16 22 C 0.03 0.93 7.31 22.50 0.16 1.09 16 23 F -0.13 -3.79 16.72 44.97 0.75 -3.03 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.75 7.45 -2.39 -0.02 1.73 16 26 H 0.07 3.63 6.07 -2.38 -0.01 3.61 16 27 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 28 H 0.42 12.40 7.72 -92.71 -0.72 11.68 16 29 H 0.15 4.99 5.78 -2.91 -0.02 4.97 16 30 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.42 2.87 9.06 -74.06 -0.67 2.20 16 Total: -1.00 -63.00 281.25 3.76 -59.25 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -0.17 Total: 12.07 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 3.02 Total: -2.92 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.35 Total: -73.01 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.29 Total: -34.74 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 1.52 Total: -5.61 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.00 3.76 -59.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597750151.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.439 kcal (2) G-P(sol) polarization free energy of solvation -63.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds