Wall clock time and date at job start Mon Mar 30 2020 07:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34777 * 117.00167 * 2 1 4 4 O 1.21533 * 119.99911 * 359.97438 * 3 2 1 5 5 C 1.47277 * 119.99842 * 180.27187 * 3 2 1 6 6 C 1.36174 * 126.45542 * 179.41176 * 5 3 2 7 7 O 1.34235 * 106.93817 * 179.84425 * 6 5 3 8 8 C 1.34060 * 108.23990 * 0.41910 * 7 6 5 9 9 C 1.50703 * 125.36901 * 179.77070 * 8 7 6 10 10 H 1.08999 * 109.47090 * 194.96587 * 9 8 7 11 11 C 1.52997 * 109.47139 * 74.95796 * 9 8 7 12 12 S 1.81404 * 109.46762 * 314.96257 * 9 8 7 13 13 C 1.81401 * 102.99683 * 185.00168 * 12 9 8 14 14 C 1.50707 * 109.47113 * 179.97438 * 13 12 9 15 15 H 1.08002 * 119.99701 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00200 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99667 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00035 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47091 * 89.99842 * 18 16 14 20 20 H 1.48501 * 109.47166 * 209.99714 * 18 16 14 21 21 H 1.48495 * 109.47368 * 330.00000 * 18 16 14 22 22 N 1.29921 * 109.26478 * 359.73457 * 8 7 6 23 23 H 1.09004 * 109.46605 * 60.00795 * 1 2 3 24 24 H 1.09001 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47461 * 300.00595 * 1 2 3 26 26 H 1.07998 * 126.52908 * 359.97438 * 6 5 3 27 27 H 1.09004 * 109.46999 * 60.00636 * 11 9 8 28 28 H 1.08998 * 109.47135 * 179.97438 * 11 9 8 29 29 H 1.08997 * 109.47311 * 300.00148 * 11 9 8 30 30 H 1.09001 * 109.47067 * 299.99729 * 13 12 9 31 31 H 1.09000 * 109.47324 * 59.99855 * 13 12 9 32 32 H 0.96998 * 119.99502 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5346 1.2779 -0.0061 6 6 4.2853 2.4139 -0.0180 7 8 5.5723 2.0322 -0.0162 8 6 5.6126 0.6922 -0.0127 9 6 6.8671 -0.1428 -0.0146 10 1 6.6186 -1.1713 -0.2764 11 6 7.5037 -0.1100 1.3762 12 16 8.0360 0.5251 -1.2305 13 6 9.3917 -0.6797 -1.1977 14 6 10.4614 -0.2591 -2.1724 15 1 10.3377 0.6427 -2.7538 16 6 11.5978 -1.0253 -2.3219 17 7 11.7481 -2.1237 -1.6142 18 14 12.9233 -0.5042 -3.5305 19 1 13.9048 0.3717 -2.8416 20 1 13.6168 -1.7084 -4.0543 21 1 12.3023 0.2383 -4.6566 22 7 4.3995 0.2270 -0.0066 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.9157 3.4286 -0.0253 27 1 6.8014 -0.5113 2.1068 28 1 8.4109 -0.7143 1.3749 29 1 7.7523 0.9185 1.6379 30 1 9.8127 -0.7257 -0.1932 31 1 9.0116 -1.6622 -1.4776 32 1 12.5478 -2.6625 -1.7191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601083644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:59 Heat of formation + Delta-G solvation = -68.387928 kcal Electronic energy + Delta-G solvation = -17616.782216 eV Core-core repulsion = 14477.743644 eV Total energy + Delta-G solvation = -3139.038572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.57649 -40.40890 -36.70790 -35.09908 -33.98609 -33.22116 -29.95762 -28.57888 -28.09636 -24.64043 -24.32286 -23.20567 -21.65927 -20.66177 -18.52945 -17.38372 -17.07404 -16.60272 -16.54067 -16.31280 -15.57127 -14.91874 -14.61031 -14.14917 -13.63215 -13.58917 -13.39640 -12.99304 -12.44403 -12.42135 -12.30421 -11.74938 -11.55223 -11.39829 -11.09518 -11.05215 -10.91018 -10.85673 -10.74821 -10.06046 -9.69953 -9.17455 -8.96690 -8.67485 -6.90097 -6.26053 -4.30764 0.77391 1.59088 2.20698 2.37230 2.54443 2.90489 3.23131 3.29247 3.33909 3.54350 3.82933 4.30697 4.50414 4.60584 4.84578 4.92764 5.03758 5.11590 5.20297 5.24349 5.40903 5.44740 5.71231 5.83555 5.93837 6.03966 6.26465 6.99311 7.00563 7.24729 7.57515 7.68218 7.91796 8.70723 9.32906 10.85072 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.042639 B = 0.003365 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.520449 B = 8319.528547 C = 8397.345278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.336 6.336 3 C 0.561 3.439 4 O -0.506 6.506 5 C -0.067 4.067 6 C 0.029 3.971 7 O -0.173 6.173 8 C 0.244 3.756 9 C 0.019 3.981 10 H 0.125 0.875 11 C -0.144 4.144 12 S -0.270 6.270 13 C 0.091 3.909 14 C -0.515 4.515 15 H 0.068 0.932 16 C 0.067 3.933 17 N -0.891 5.891 18 Si 0.907 3.093 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.271 1.271 22 N -0.444 5.444 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.064 0.936 26 H 0.234 0.766 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.620 4.803 5.743 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.251 6.251 3 C 0.405 3.595 4 O -0.395 6.395 5 C -0.185 4.185 6 C -0.047 4.047 7 O -0.057 6.057 8 C 0.034 3.966 9 C -0.110 4.110 10 H 0.143 0.857 11 C -0.204 4.204 12 S -0.044 6.044 13 C -0.056 4.056 14 C -0.554 4.554 15 H 0.086 0.914 16 C -0.137 4.137 17 N -0.529 5.529 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.195 1.195 22 N -0.174 5.174 23 H 0.083 0.917 24 H 0.123 0.877 25 H 0.083 0.917 26 H 0.250 0.750 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.990 5.192 5.166 18.501 hybrid contribution 0.672 -0.168 0.065 0.696 sum -16.318 5.023 5.230 17.857 Atomic orbital electron populations 1.23354 0.75797 1.04073 1.02625 1.86689 1.23395 1.31515 1.83505 1.19409 0.86109 0.81792 0.72189 1.90881 1.65693 1.36011 1.46909 1.20528 0.92372 0.90315 1.15325 1.25325 0.79935 1.00702 0.98732 1.84534 1.27830 1.25545 1.67822 1.25572 0.94850 0.78065 0.98144 1.21510 0.89396 0.99154 1.00980 0.85739 1.22116 1.01410 1.04110 0.92768 1.87015 1.22250 1.43070 1.52017 1.21193 0.90418 0.92777 1.01212 1.20626 1.01805 1.10116 1.22885 0.91394 1.24943 0.97989 0.94596 0.96163 1.69945 1.28308 1.14317 1.40319 0.86334 0.81108 0.78166 0.80969 1.20298 1.20929 1.19525 1.70913 0.98668 1.30287 1.17508 0.91671 0.87710 0.91712 0.74996 0.91878 0.89789 0.90970 0.93919 0.94190 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.34 -4.30 10.58 -40.70 -0.43 -4.73 16 3 C 0.56 7.70 7.96 34.40 0.27 7.98 16 4 O -0.51 -7.18 16.68 -19.29 -0.32 -7.50 16 5 C -0.07 -0.97 7.04 -83.04 -0.58 -1.55 16 6 C 0.03 0.35 11.95 29.99 0.36 0.71 16 7 O -0.17 -2.57 10.58 6.54 0.07 -2.50 16 8 C 0.24 3.93 6.89 -13.08 -0.09 3.84 16 9 C 0.02 0.31 3.32 -27.88 -0.09 0.22 16 10 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 11 C -0.14 -2.09 9.08 37.16 0.34 -1.75 16 12 S -0.27 -5.59 20.95 -107.50 -2.25 -7.84 16 13 C 0.09 2.21 5.39 36.01 0.19 2.40 16 14 C -0.51 -13.93 9.13 -34.44 -0.31 -14.25 16 15 H 0.07 1.85 7.71 -52.49 -0.40 1.44 16 16 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 17 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 18 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 N -0.44 -7.25 11.36 -7.67 -0.09 -7.34 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.23 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.28 6.92 -51.93 -0.36 0.92 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.04 1.06 7.14 -51.92 -0.37 0.68 16 31 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -30.77 306.20 -5.29 -36.06 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -3.65 Total: -2.97 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 1.05 Total: 0.68 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.65 Total: -31.57 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.68 Total: -14.74 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -2.25 Total: -7.84 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.77 -5.29 -36.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601083644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.332 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds