Wall clock time and date at job start Mon Mar 30 2020 07:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34777 * 117.00167 * 2 1 4 4 O 1.21533 * 119.99911 * 359.97438 * 3 2 1 5 5 C 1.47277 * 119.99842 * 180.27187 * 3 2 1 6 6 C 1.36174 * 126.45542 * 179.41176 * 5 3 2 7 7 O 1.34235 * 106.93817 * 179.84425 * 6 5 3 8 8 C 1.34060 * 108.23990 * 0.41910 * 7 6 5 9 9 C 1.50703 * 125.36901 * 179.77070 * 8 7 6 10 10 H 1.08999 * 109.47090 * 194.96587 * 9 8 7 11 11 C 1.52997 * 109.47139 * 74.95796 * 9 8 7 12 12 S 1.81404 * 109.46762 * 314.96257 * 9 8 7 13 13 C 1.81401 * 102.99683 * 185.00168 * 12 9 8 14 14 C 1.50707 * 109.47113 * 179.97438 * 13 12 9 15 15 H 1.08002 * 119.99701 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00200 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99667 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00035 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47091 * 89.99842 * 18 16 14 20 20 H 1.48501 * 109.47166 * 209.99714 * 18 16 14 21 21 H 1.48495 * 109.47368 * 330.00000 * 18 16 14 22 22 N 1.29921 * 109.26478 * 359.73457 * 8 7 6 23 23 H 1.09004 * 109.46605 * 60.00795 * 1 2 3 24 24 H 1.09001 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47461 * 300.00595 * 1 2 3 26 26 H 1.07998 * 126.52908 * 359.97438 * 6 5 3 27 27 H 1.09004 * 109.46999 * 60.00636 * 11 9 8 28 28 H 1.08998 * 109.47135 * 179.97438 * 11 9 8 29 29 H 1.08997 * 109.47311 * 300.00148 * 11 9 8 30 30 H 1.09001 * 109.47067 * 299.99729 * 13 12 9 31 31 H 1.09000 * 109.47324 * 59.99855 * 13 12 9 32 32 H 0.96998 * 119.99502 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5346 1.2779 -0.0061 6 6 4.2853 2.4139 -0.0180 7 8 5.5723 2.0322 -0.0162 8 6 5.6126 0.6922 -0.0127 9 6 6.8671 -0.1428 -0.0146 10 1 6.6186 -1.1713 -0.2764 11 6 7.5037 -0.1100 1.3762 12 16 8.0360 0.5251 -1.2305 13 6 9.3917 -0.6797 -1.1977 14 6 10.4614 -0.2591 -2.1724 15 1 10.3377 0.6427 -2.7538 16 6 11.5978 -1.0253 -2.3219 17 7 11.7481 -2.1237 -1.6142 18 14 12.9233 -0.5042 -3.5305 19 1 13.9048 0.3717 -2.8416 20 1 13.6168 -1.7084 -4.0543 21 1 12.3023 0.2383 -4.6566 22 7 4.3995 0.2270 -0.0066 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.9157 3.4286 -0.0253 27 1 6.8014 -0.5113 2.1068 28 1 8.4109 -0.7143 1.3749 29 1 7.7523 0.9185 1.6379 30 1 9.8127 -0.7257 -0.1932 31 1 9.0116 -1.6622 -1.4776 32 1 12.5478 -2.6625 -1.7191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601083644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:59 Heat of formation + Delta-G solvation = -88.921403 kcal Electronic energy + Delta-G solvation = -17617.672614 eV Core-core repulsion = 14477.743644 eV Total energy + Delta-G solvation = -3139.928971 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.71905 -41.38608 -37.67410 -36.28145 -35.32076 -35.17050 -31.16394 -30.49048 -28.88226 -25.76520 -25.40730 -25.20864 -22.81308 -21.80041 -19.63164 -18.70855 -18.26993 -18.16073 -17.56902 -17.33133 -17.17683 -16.44552 -16.07707 -15.29508 -14.89072 -14.59416 -14.58487 -14.42714 -14.31543 -14.03496 -13.30328 -13.08409 -12.87198 -12.67577 -12.58157 -12.55190 -12.15679 -11.99397 -11.89265 -11.83950 -11.59995 -10.75489 -10.72086 -10.25782 -8.59014 -8.31674 -6.44040 -0.25502 0.28194 0.93591 1.29277 1.43273 1.43510 1.49929 1.55459 1.81088 1.85717 2.38586 2.61463 3.03888 3.50449 3.58580 3.78277 4.00073 4.23510 4.29628 4.31705 4.44694 4.55989 4.66202 4.69767 4.73942 4.96049 4.97467 5.09761 5.14048 5.58976 5.89867 6.15574 6.53600 6.62623 7.23883 8.79951 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.042639 B = 0.003365 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.520449 B = 8319.528547 C = 8397.345278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.563 3.437 4 O -0.515 6.515 5 C -0.094 4.094 6 C 0.058 3.942 7 O -0.181 6.181 8 C 0.228 3.772 9 C 0.031 3.969 10 H 0.125 0.875 11 C -0.138 4.138 12 S -0.279 6.279 13 C 0.095 3.905 14 C -0.537 4.537 15 H 0.061 0.939 16 C 0.019 3.981 17 N -0.922 5.922 18 Si 0.972 3.028 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.267 1.267 22 N -0.456 5.456 23 H 0.069 0.931 24 H 0.131 0.869 25 H 0.072 0.928 26 H 0.277 0.723 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.020 0.980 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.505 5.813 5.817 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.408 3.592 4 O -0.405 6.405 5 C -0.212 4.212 6 C -0.016 4.016 7 O -0.066 6.066 8 C 0.017 3.983 9 C -0.098 4.098 10 H 0.143 0.857 11 C -0.198 4.198 12 S -0.052 6.052 13 C -0.052 4.052 14 C -0.576 4.576 15 H 0.080 0.920 16 C -0.182 4.182 17 N -0.560 5.560 18 Si 0.796 3.204 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.192 1.192 22 N -0.186 5.186 23 H 0.088 0.912 24 H 0.149 0.851 25 H 0.090 0.910 26 H 0.292 0.708 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.885 6.202 5.242 19.642 hybrid contribution 0.749 -0.468 0.093 0.888 sum -17.136 5.734 5.335 18.842 Atomic orbital electron populations 1.23701 0.73449 1.06117 1.03242 1.86667 1.25798 1.31142 1.83160 1.19315 0.85875 0.82014 0.72005 1.90869 1.65781 1.36220 1.47638 1.20815 0.92856 0.90538 1.16962 1.26185 0.78525 1.01863 0.95063 1.84541 1.29208 1.24930 1.67881 1.25225 0.94422 0.78589 1.00047 1.21447 0.88694 0.99062 1.00578 0.85705 1.22066 1.01324 1.04365 0.92000 1.86787 1.21982 1.41982 1.54420 1.20861 0.91520 0.92885 0.99934 1.20948 1.03039 1.10110 1.23531 0.92036 1.25813 1.00138 0.94497 0.97763 1.70038 1.29120 1.15243 1.41604 0.85330 0.78310 0.78029 0.78722 1.19401 1.20208 1.19178 1.70839 0.98979 1.31473 1.17283 0.91201 0.85067 0.90951 0.70773 0.89412 0.90916 0.90553 0.95011 0.96190 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.35 -8.56 10.58 -56.88 -0.60 -9.16 16 3 C 0.56 14.62 7.96 70.20 0.56 15.17 16 4 O -0.52 -13.65 16.68 19.73 0.33 -13.32 16 5 C -0.09 -2.55 7.04 40.38 0.28 -2.26 16 6 C 0.06 1.28 11.95 67.34 0.80 2.09 16 7 O -0.18 -5.07 10.58 0.50 0.01 -5.07 16 8 C 0.23 7.09 6.89 88.39 0.61 7.70 16 9 C 0.03 1.03 3.32 29.85 0.10 1.13 16 10 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 11 C -0.14 -3.89 9.08 71.98 0.65 -3.24 16 12 S -0.28 -11.60 20.95 -56.49 -1.18 -12.78 16 13 C 0.10 4.77 5.39 71.24 0.38 5.15 16 14 C -0.54 -29.55 9.13 25.60 0.23 -29.32 16 15 H 0.06 3.39 7.71 -2.91 -0.02 3.36 16 16 C 0.02 1.05 5.46 84.65 0.46 1.51 16 17 N -0.92 -52.26 13.29 21.45 0.28 -51.97 16 18 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 N -0.46 -14.38 11.36 -293.08 -3.33 -17.71 16 23 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.28 3.29 8.06 -2.91 -0.02 3.27 16 27 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.07 2.22 6.92 -2.39 -0.02 2.20 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.03 1.62 7.14 -2.39 -0.02 1.61 16 31 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -66.03 306.20 3.95 -62.08 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.13 Total: 3.84 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.29 Total: -0.46 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -3.05 Total: -69.68 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.27 Total: -27.55 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: -11.60 SS G_CDS: -1.18 Total: -12.78 kcal Total: -66.03 3.95 -62.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601083644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.845 kcal (2) G-P(sol) polarization free energy of solvation -66.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds