Wall clock time and date at job start Mon Mar 30 2020 07:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46933 * 2 1 4 4 C 1.53002 * 109.46858 * 240.00440 * 2 1 3 5 5 C 1.50694 * 109.47476 * 175.00023 * 4 2 1 6 6 H 1.08004 * 119.99937 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00498 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99598 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00191 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47294 * 89.99661 * 9 7 5 11 11 H 1.48506 * 109.47207 * 209.99585 * 9 7 5 12 12 H 1.48502 * 109.47168 * 329.99737 * 9 7 5 13 13 S 1.81394 * 109.47481 * 120.00516 * 2 1 3 14 14 O 1.42095 * 109.47323 * 195.94182 * 13 2 1 15 15 C 1.76202 * 102.99889 * 304.99842 * 13 2 1 16 16 C 1.38272 * 119.92317 * 89.99555 * 15 13 2 17 17 C 1.38153 * 120.11422 * 179.97438 * 16 15 13 18 18 C 1.38832 * 119.94824 * 0.28555 * 17 16 15 19 19 N 1.39845 * 120.07911 * 179.72027 * 18 17 16 20 20 C 1.39073 * 119.83898 * 359.46482 * 18 17 16 21 21 F 1.35101 * 120.05693 * 180.25565 * 20 18 17 22 22 C 1.38286 * 119.88890 * 0.53105 * 20 18 17 23 23 H 1.09007 * 109.46839 * 299.99720 * 1 2 3 24 24 H 1.09004 * 109.47395 * 59.99312 * 1 2 3 25 25 H 1.09002 * 109.47649 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46804 * 294.99830 * 4 2 1 27 27 H 1.08997 * 109.47171 * 54.99550 * 4 2 1 28 28 H 0.96999 * 119.99753 * 180.02562 * 8 7 5 29 29 H 1.07998 * 119.94140 * 359.97438 * 16 15 13 30 30 H 1.08002 * 120.02223 * 180.02562 * 17 16 15 31 31 H 0.96998 * 119.99843 * 359.97438 * 19 18 17 32 32 H 0.96995 * 119.99750 * 180.02562 * 19 18 17 33 33 H 1.07996 * 119.97640 * 179.74423 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5398 7 6 4.2302 -1.1925 -2.3586 8 7 3.5761 -1.8367 -3.3003 9 14 6.0917 -1.0602 -2.4377 10 1 6.7007 -2.2128 -1.7264 11 1 6.5287 -1.0675 -3.8570 12 1 6.5259 0.2050 -1.7927 13 16 2.1347 -0.8552 1.4810 14 8 3.5071 -0.5451 1.6798 15 6 1.3385 0.0117 2.7922 16 6 0.1012 -0.4078 3.2451 17 6 -0.5264 0.2686 4.2732 18 6 0.0834 1.3751 4.8488 19 7 -0.5521 2.0654 5.8858 20 6 1.3302 1.7921 4.3952 21 9 1.9300 2.8651 4.9557 22 6 1.9525 1.1100 3.3657 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7515 -1.7715 -1.2057 27 1 1.6052 -0.2617 -2.1370 28 1 4.0604 -2.2434 -4.0357 29 1 -0.3753 -1.2658 2.7943 30 1 -1.4926 -0.0606 4.6261 31 1 -1.4201 1.7714 6.2035 32 1 -0.1251 2.8385 6.2868 33 1 2.9188 1.4352 3.0096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695788282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:29 Heat of formation + Delta-G solvation = -70.875170 kcal Electronic energy + Delta-G solvation = -18364.011551 eV Core-core repulsion = 15237.237913 eV Total energy + Delta-G solvation = -3126.773638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.75935 -39.02960 -34.97001 -34.73261 -34.40618 -31.96356 -30.53505 -28.82407 -27.27402 -23.30933 -22.97746 -22.42673 -20.61023 -18.19732 -17.39841 -17.07478 -16.34545 -16.11211 -15.59576 -15.18521 -15.01003 -14.67934 -14.42742 -13.88884 -13.52363 -13.20404 -12.75232 -12.51137 -12.23259 -11.96484 -11.59465 -11.53561 -11.29424 -11.00638 -10.82629 -10.63532 -10.49541 -10.39383 -9.68764 -9.17968 -8.87310 -8.82181 -8.34661 -7.91756 -7.42674 -5.98824 -4.00910 1.14364 1.25942 2.52832 3.37336 3.40280 3.44473 3.53369 3.53543 3.76763 4.26020 4.53514 4.63165 4.81452 5.15658 5.38626 5.39275 5.58083 5.74548 5.85358 5.87639 6.01309 6.02721 6.10466 6.41035 6.51340 6.64792 6.73193 6.85655 7.17810 7.40704 7.60015 7.63163 8.03057 8.37927 9.10751 9.66588 11.11906 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032259 B = 0.005001 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.776818 B = 5597.966011 C = 6108.300728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.399 4.399 3 H 0.078 0.922 4 C 0.047 3.953 5 C -0.537 4.537 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.274 1.274 13 S 1.334 4.666 14 O -0.842 6.842 15 C -0.485 4.485 16 C -0.006 4.006 17 C -0.194 4.194 18 C 0.208 3.792 19 N -0.874 5.874 20 C -0.002 4.002 21 F -0.148 7.148 22 C -0.039 4.039 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.402 0.598 32 H 0.401 0.599 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.115 1.809 15.765 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.517 4.517 3 H 0.097 0.903 4 C 0.008 3.992 5 C -0.575 4.575 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.199 1.199 13 S 1.530 4.470 14 O -0.837 6.837 15 C -0.580 4.580 16 C -0.026 4.026 17 C -0.218 4.218 18 C 0.102 3.898 19 N -0.413 5.413 20 C -0.027 4.027 21 F -0.127 7.127 22 C -0.060 4.060 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.159 0.841 30 H 0.150 0.850 31 H 0.231 0.769 32 H 0.229 0.771 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.411 1.007 15.707 20.044 hybrid contribution 1.439 2.909 0.312 3.261 sum -10.972 3.916 16.018 19.807 Atomic orbital electron populations 1.21530 0.93515 1.01899 1.01321 1.27485 1.00906 1.09168 1.14170 0.90309 1.18856 0.95770 0.95067 0.89475 1.21589 0.92015 1.34871 1.09024 0.91181 1.24941 0.98422 0.95015 0.95442 1.69959 1.35560 1.35932 1.12040 0.86604 0.85925 0.78898 0.76742 1.20403 1.21358 1.19889 1.69327 0.87046 1.08419 0.82193 1.93068 1.27543 1.81215 1.81896 1.28225 1.05115 1.07317 1.17367 1.20687 0.91922 0.97183 0.92795 1.20593 1.01963 0.97525 1.01670 1.17863 0.90453 0.92363 0.89078 1.42407 1.24079 1.35278 1.39539 1.17288 0.93584 0.90863 1.00966 1.91417 1.83346 1.53416 1.84562 1.21018 0.99334 0.93080 0.92521 0.93428 0.92597 0.91831 0.95414 0.95333 0.92985 0.84071 0.85041 0.76942 0.77064 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 8.84 37.16 0.33 -1.51 16 2 C -0.40 -7.81 2.81 -26.73 -0.08 -7.89 16 3 H 0.08 1.71 8.14 -51.92 -0.42 1.28 16 4 C 0.05 1.15 4.45 -27.88 -0.12 1.02 16 5 C -0.54 -15.45 8.39 -34.44 -0.29 -15.74 16 6 H 0.07 2.12 6.35 -52.48 -0.33 1.79 16 7 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 8 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.89 22.93 29.54 -169.99 -5.02 17.91 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.27 -7.16 7.11 56.52 0.40 -6.75 16 13 S 1.33 23.56 12.71 -107.50 -1.37 22.20 16 14 O -0.84 -20.22 15.24 -35.23 -0.54 -20.76 16 15 C -0.48 -7.30 4.81 -39.55 -0.19 -7.49 16 16 C -0.01 -0.07 8.52 -39.60 -0.34 -0.40 16 17 C -0.19 -2.00 9.90 -39.39 -0.39 -2.39 16 18 C 0.21 2.49 6.76 -83.67 -0.57 1.92 16 19 N -0.87 -7.39 9.10 32.46 0.30 -7.10 16 20 C 0.00 -0.04 7.31 -39.25 -0.29 -0.32 16 21 F -0.15 -2.28 16.64 2.25 0.04 -2.24 16 22 C -0.04 -0.66 9.41 -39.54 -0.37 -1.03 16 23 H 0.05 0.61 6.37 -51.92 -0.33 0.28 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.40 2.24 8.84 -40.82 -0.36 1.88 16 32 H 0.40 3.18 8.32 -40.82 -0.34 2.84 16 33 H 0.14 2.60 7.45 -52.49 -0.39 2.21 16 LS Contribution 296.96 15.07 4.48 4.48 Total: -1.00 -36.31 296.96 -7.63 -43.94 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -3.85 Total: -0.46 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: -2.40 Total: -32.09 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 1.03 Total: -32.97 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.54 Total: -20.76 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Atomic # 16 Polarization: 23.56 SS G_CDS: -1.37 Total: 22.20 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -36.31 -7.63 -43.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.933 kcal (2) G-P(sol) polarization free energy of solvation -36.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds