Wall clock time and date at job start Mon Mar 30 2020 07:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46933 * 2 1 4 4 C 1.53002 * 109.46858 * 240.00440 * 2 1 3 5 5 C 1.50694 * 109.47476 * 175.00023 * 4 2 1 6 6 H 1.08004 * 119.99937 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00498 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99598 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00191 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47294 * 89.99661 * 9 7 5 11 11 H 1.48506 * 109.47207 * 209.99585 * 9 7 5 12 12 H 1.48502 * 109.47168 * 329.99737 * 9 7 5 13 13 S 1.81394 * 109.47481 * 120.00516 * 2 1 3 14 14 O 1.42095 * 109.47323 * 195.94182 * 13 2 1 15 15 C 1.76202 * 102.99889 * 304.99842 * 13 2 1 16 16 C 1.38272 * 119.92317 * 89.99555 * 15 13 2 17 17 C 1.38153 * 120.11422 * 179.97438 * 16 15 13 18 18 C 1.38832 * 119.94824 * 0.28555 * 17 16 15 19 19 N 1.39845 * 120.07911 * 179.72027 * 18 17 16 20 20 C 1.39073 * 119.83898 * 359.46482 * 18 17 16 21 21 F 1.35101 * 120.05693 * 180.25565 * 20 18 17 22 22 C 1.38286 * 119.88890 * 0.53105 * 20 18 17 23 23 H 1.09007 * 109.46839 * 299.99720 * 1 2 3 24 24 H 1.09004 * 109.47395 * 59.99312 * 1 2 3 25 25 H 1.09002 * 109.47649 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46804 * 294.99830 * 4 2 1 27 27 H 1.08997 * 109.47171 * 54.99550 * 4 2 1 28 28 H 0.96999 * 119.99753 * 180.02562 * 8 7 5 29 29 H 1.07998 * 119.94140 * 359.97438 * 16 15 13 30 30 H 1.08002 * 120.02223 * 180.02562 * 17 16 15 31 31 H 0.96998 * 119.99843 * 359.97438 * 19 18 17 32 32 H 0.96995 * 119.99750 * 180.02562 * 19 18 17 33 33 H 1.07996 * 119.97640 * 179.74423 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5398 7 6 4.2302 -1.1925 -2.3586 8 7 3.5761 -1.8367 -3.3003 9 14 6.0917 -1.0602 -2.4377 10 1 6.7007 -2.2128 -1.7264 11 1 6.5287 -1.0675 -3.8570 12 1 6.5259 0.2050 -1.7927 13 16 2.1347 -0.8552 1.4810 14 8 3.5071 -0.5451 1.6798 15 6 1.3385 0.0117 2.7922 16 6 0.1012 -0.4078 3.2451 17 6 -0.5264 0.2686 4.2732 18 6 0.0834 1.3751 4.8488 19 7 -0.5521 2.0654 5.8858 20 6 1.3302 1.7921 4.3952 21 9 1.9300 2.8651 4.9557 22 6 1.9525 1.1100 3.3657 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7515 -1.7715 -1.2057 27 1 1.6052 -0.2617 -2.1370 28 1 4.0604 -2.2434 -4.0357 29 1 -0.3753 -1.2658 2.7943 30 1 -1.4926 -0.0606 4.6261 31 1 -1.4201 1.7714 6.2035 32 1 -0.1251 2.8385 6.2868 33 1 2.9188 1.4352 3.0096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695788282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:29 Heat of formation + Delta-G solvation = -98.020400 kcal Electronic energy + Delta-G solvation = -18365.188656 eV Core-core repulsion = 15237.237913 eV Total energy + Delta-G solvation = -3127.950743 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.90223 -40.01815 -36.61081 -36.30285 -35.63660 -33.94787 -31.55269 -29.94041 -28.99151 -25.16878 -24.05228 -23.48463 -22.25509 -19.35915 -18.53671 -18.33464 -18.08083 -17.46278 -16.75555 -16.62512 -16.35611 -16.13071 -15.98974 -15.14741 -14.83669 -14.47668 -14.08812 -13.99537 -13.67971 -13.40781 -13.22243 -13.18828 -12.69656 -12.61274 -12.44081 -12.23333 -12.19443 -11.84414 -11.50913 -11.11573 -10.71465 -10.48579 -9.84656 -9.22943 -8.60968 -8.23281 -6.30389 0.04966 0.23032 1.17891 1.31278 1.32771 1.44654 2.10260 2.38441 2.64573 2.75438 3.08229 3.16086 3.34576 3.74886 4.21902 4.24913 4.34483 4.47608 4.67254 4.75309 4.84790 5.06434 5.16163 5.17841 5.21983 5.38244 5.43675 5.53583 5.65145 5.79079 5.82425 6.23206 6.31805 6.81464 6.86195 7.39214 8.87197 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032259 B = 0.005001 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.776818 B = 5597.966011 C = 6108.300728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.401 4.401 3 H 0.042 0.958 4 C 0.049 3.951 5 C -0.555 4.555 6 H 0.044 0.956 7 C 0.019 3.981 8 N -0.917 5.917 9 Si 0.939 3.061 10 H -0.270 1.270 11 H -0.270 1.270 12 H -0.287 1.287 13 S 1.383 4.617 14 O -0.918 6.918 15 C -0.498 4.498 16 C 0.011 3.989 17 C -0.180 4.180 18 C 0.221 3.779 19 N -0.855 5.855 20 C -0.031 4.031 21 F -0.159 7.159 22 C -0.069 4.069 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.100 0.900 26 H 0.035 0.965 27 H 0.004 0.996 28 H 0.266 0.734 29 H 0.192 0.808 30 H 0.182 0.818 31 H 0.421 0.579 32 H 0.405 0.595 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.471 0.740 17.574 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.519 4.519 3 H 0.061 0.939 4 C 0.011 3.989 5 C -0.593 4.593 6 H 0.063 0.937 7 C -0.180 4.180 8 N -0.557 5.557 9 Si 0.765 3.235 10 H -0.195 1.195 11 H -0.194 1.194 12 H -0.213 1.213 13 S 1.583 4.417 14 O -0.914 6.914 15 C -0.598 4.598 16 C -0.009 4.009 17 C -0.204 4.204 18 C 0.112 3.888 19 N -0.395 5.395 20 C -0.056 4.056 21 F -0.138 7.138 22 C -0.089 4.089 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.119 0.881 26 H 0.054 0.946 27 H 0.022 0.978 28 H 0.075 0.925 29 H 0.210 0.790 30 H 0.200 0.800 31 H 0.253 0.747 32 H 0.233 0.767 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.776 -0.066 17.499 23.560 hybrid contribution 2.351 3.333 -0.072 4.080 sum -13.424 3.267 17.427 22.239 Atomic orbital electron populations 1.21566 0.89183 1.04687 1.02315 1.27453 1.04688 1.06425 1.13317 0.93866 1.18731 0.93276 0.95812 0.91061 1.21850 0.94512 1.34526 1.08428 0.93750 1.25592 1.02131 0.94968 0.95348 1.70006 1.36873 1.36414 1.12409 0.85855 0.81760 0.78364 0.77524 1.19494 1.19433 1.21263 1.68159 0.84645 1.07451 0.81465 1.92946 1.32182 1.82867 1.83405 1.27607 1.07264 1.07771 1.17139 1.21277 0.89615 0.97823 0.92193 1.21144 1.03259 0.95772 1.00179 1.18057 0.89012 0.92580 0.89109 1.42450 1.24504 1.34623 1.37912 1.17433 0.95253 0.91293 1.01655 1.91378 1.83851 1.53905 1.84656 1.20833 0.98504 0.95041 0.94569 0.90805 0.93270 0.88104 0.94641 0.97796 0.92462 0.79046 0.80027 0.74699 0.76656 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 8.84 71.98 0.64 -2.62 16 2 C -0.40 -16.08 2.81 30.59 0.09 -16.00 16 3 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 4 C 0.05 2.50 4.45 29.85 0.13 2.64 16 5 C -0.55 -33.36 8.39 25.60 0.21 -33.15 16 6 H 0.04 2.86 6.35 -2.91 -0.02 2.84 16 7 C 0.02 1.13 5.46 84.65 0.46 1.59 16 8 N -0.92 -55.13 13.29 21.45 0.28 -54.84 16 9 Si 0.94 48.10 29.54 68.60 2.03 50.13 16 10 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.29 -15.17 7.11 99.48 0.71 -14.47 16 13 S 1.38 49.75 12.71 -56.49 -0.72 49.03 16 14 O -0.92 -47.20 15.24 -148.98 -2.27 -49.47 16 15 C -0.50 -14.52 4.81 22.29 0.11 -14.41 16 16 C 0.01 0.19 8.52 22.26 0.19 0.38 16 17 C -0.18 -2.66 9.90 22.39 0.22 -2.44 16 18 C 0.22 4.48 6.76 38.21 0.26 4.74 16 19 N -0.86 -10.90 9.10 -51.21 -0.47 -11.36 16 20 C -0.03 -0.94 7.31 22.48 0.16 -0.77 16 21 F -0.16 -4.98 16.64 44.97 0.75 -4.24 16 22 C -0.07 -2.41 9.41 22.29 0.21 -2.20 16 23 H 0.07 1.63 6.37 -2.38 -0.02 1.61 16 24 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 31 H 0.42 2.39 8.84 -92.71 -0.82 1.57 16 32 H 0.40 5.15 8.32 -92.71 -0.77 4.38 16 33 H 0.09 4.00 7.45 -2.91 -0.02 3.97 16 Total: -1.00 -85.95 296.96 1.85 -84.10 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -0.44 Total: -1.11 kcal Atomic # 6 Polarization: -64.92 SS G_CDS: 2.68 Total: -62.24 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -0.18 Total: -66.21 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -2.27 Total: -49.47 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.75 Total: -4.24 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Atomic # 16 Polarization: 49.75 SS G_CDS: -0.72 Total: 49.03 kcal Total: -85.95 1.85 -84.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.923 kcal (2) G-P(sol) polarization free energy of solvation -85.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds