Wall clock time and date at job start Mon Mar 30 2020 07:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46569 * 2 1 4 4 C 1.52992 * 109.46844 * 120.00089 * 2 1 3 5 5 C 1.50701 * 109.47009 * 185.00150 * 4 2 1 6 6 H 1.08007 * 119.99686 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00214 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99949 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00139 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47272 * 89.99546 * 9 7 5 11 11 H 1.48503 * 109.47366 * 209.99894 * 9 7 5 12 12 H 1.48505 * 109.46848 * 329.99951 * 9 7 5 13 13 S 1.81394 * 109.47072 * 240.00419 * 2 1 3 14 14 O 1.42102 * 109.46859 * 305.94005 * 13 2 1 15 15 C 1.76196 * 103.00548 * 54.99603 * 13 2 1 16 16 C 1.38277 * 119.91464 * 89.99563 * 15 13 2 17 17 C 1.38152 * 120.11015 * 179.72367 * 16 15 13 18 18 C 1.38834 * 119.94875 * 0.26187 * 17 16 15 19 19 N 1.39844 * 120.08042 * 179.97438 * 18 17 16 20 20 C 1.39072 * 119.83932 * 359.97438 * 18 17 16 21 21 F 1.35102 * 120.05554 * 180.02562 * 20 18 17 22 22 C 1.38278 * 119.89045 * 359.97438 * 20 18 17 23 23 H 1.08998 * 109.47088 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47479 * 299.99993 * 1 2 3 25 25 H 1.09005 * 109.46757 * 60.00154 * 1 2 3 26 26 H 1.09006 * 109.47441 * 304.99598 * 4 2 1 27 27 H 1.08992 * 109.47388 * 65.00347 * 4 2 1 28 28 H 0.97001 * 119.99775 * 179.97438 * 8 7 5 29 29 H 1.08002 * 119.94880 * 0.02562 * 16 15 13 30 30 H 1.07998 * 120.02618 * 180.27823 * 17 16 15 31 31 H 0.97006 * 120.00237 * 359.97438 * 19 18 17 32 32 H 0.97002 * 120.00156 * 180.02562 * 19 18 17 33 33 H 1.07996 * 119.97780 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2303 -1.1926 2.3583 8 7 5.5410 -1.1002 2.4134 9 14 3.3015 -2.1078 3.6958 10 1 3.1708 -3.5380 3.3179 11 1 4.0447 -2.0002 4.9770 12 1 1.9503 -1.5127 3.8559 13 16 2.1347 -0.8550 -1.4811 14 8 1.5512 -2.1487 -1.5526 15 6 1.3384 0.0119 -2.7922 16 6 1.9523 1.1102 -3.3656 17 6 1.3341 1.7895 -4.3977 18 6 0.0920 1.3719 -4.8563 19 7 -0.5364 2.0578 -5.9005 20 6 -0.5257 0.2700 -4.2748 21 9 -1.7341 -0.1405 -4.7181 22 6 0.0995 -0.4056 -3.2429 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.6054 -0.2617 2.1370 27 1 1.7517 -1.7714 1.2055 28 1 6.0253 -1.5063 3.1492 29 1 2.9188 1.4348 -3.0094 30 1 1.8169 2.6444 -4.8475 31 1 -0.1047 2.8265 -6.3050 32 1 -1.4044 1.7653 -6.2198 33 1 -0.3787 -1.2618 -2.7906 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695788283.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:32 Heat of formation + Delta-G solvation = -69.413609 kcal Electronic energy + Delta-G solvation = -18368.835901 eV Core-core repulsion = 15242.125641 eV Total energy + Delta-G solvation = -3126.710260 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.79032 -39.04209 -35.20647 -34.70608 -34.52173 -32.12239 -30.55906 -28.88863 -27.86999 -23.24534 -22.95769 -22.40113 -20.48315 -18.22292 -17.47007 -17.12163 -16.78094 -16.28019 -15.64979 -15.37475 -15.14251 -14.72030 -14.32496 -13.88813 -13.49633 -13.12152 -12.80882 -12.59127 -12.29711 -12.16057 -12.06626 -11.70411 -11.51384 -11.31316 -10.91056 -10.81169 -10.38142 -10.00326 -9.72888 -9.37512 -9.27863 -8.83143 -8.60108 -7.93823 -7.44559 -6.11860 -4.11938 1.12171 1.24609 2.46865 3.30668 3.33256 3.38516 3.43051 3.52440 3.72433 4.23396 4.42198 4.53486 4.78505 5.15018 5.24718 5.37140 5.57170 5.62101 5.70387 5.82935 5.91917 6.01644 6.09511 6.35096 6.39777 6.53244 6.63307 6.71832 7.14798 7.16588 7.23322 7.39778 7.67207 8.40471 8.89336 9.51453 11.00047 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.037966 B = 0.004814 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.330320 B = 5814.451592 C = 6115.414424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.390 4.390 3 H 0.116 0.884 4 C 0.006 3.994 5 C -0.537 4.537 6 H 0.086 0.914 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.871 3.129 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.266 1.266 13 S 1.354 4.646 14 O -0.860 6.860 15 C -0.487 4.487 16 C -0.004 4.004 17 C -0.193 4.193 18 C 0.210 3.790 19 N -0.873 5.873 20 C -0.004 4.004 21 F -0.149 7.149 22 C -0.038 4.038 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.027 0.973 27 H 0.016 0.984 28 H 0.265 0.735 29 H 0.145 0.855 30 H 0.133 0.867 31 H 0.402 0.598 32 H 0.401 0.599 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.681 8.416 -14.491 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.508 4.508 3 H 0.134 0.866 4 C -0.033 4.033 5 C -0.575 4.575 6 H 0.104 0.896 7 C -0.126 4.126 8 N -0.532 5.532 9 Si 0.698 3.302 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.190 1.190 13 S 1.551 4.449 14 O -0.855 6.855 15 C -0.583 4.583 16 C -0.024 4.024 17 C -0.216 4.216 18 C 0.104 3.896 19 N -0.413 5.413 20 C -0.029 4.029 21 F -0.128 7.128 22 C -0.058 4.058 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.162 0.838 30 H 0.151 0.849 31 H 0.231 0.769 32 H 0.229 0.771 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.959 7.560 -14.472 17.749 hybrid contribution -3.174 -0.298 0.556 3.236 sum -10.132 7.262 -13.917 18.683 Atomic orbital electron populations 1.21855 0.95218 1.01680 1.01482 1.27355 0.99980 1.09947 1.13525 0.86592 1.19368 0.97495 0.94929 0.91464 1.21177 0.89244 1.36271 1.10800 0.89648 1.24932 0.94663 0.95358 0.97665 1.69885 1.06393 1.44656 1.32217 0.86898 0.80600 0.80964 0.81697 1.20020 1.21196 1.19038 1.70217 1.10436 0.81930 0.82346 1.92973 1.77375 1.31273 1.83906 1.28158 1.03378 1.08971 1.17778 1.20739 0.98555 0.91039 0.92025 1.20618 0.94738 1.04031 1.02258 1.17875 0.92564 0.90524 0.88676 1.42417 1.24353 1.35650 1.38839 1.17273 0.84415 0.99311 1.01906 1.91415 1.42194 1.90178 1.88994 1.20972 0.94071 0.97622 0.93182 0.92844 0.92598 0.93328 0.95509 0.96547 0.92509 0.83755 0.84934 0.76889 0.77073 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.78 37.16 0.33 -2.23 16 2 C -0.39 -7.35 2.81 -26.73 -0.08 -7.43 16 3 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 4 C 0.01 0.14 3.51 -27.89 -0.10 0.04 16 5 C -0.54 -13.95 9.09 -34.44 -0.31 -14.26 16 6 H 0.09 2.17 7.85 -52.48 -0.41 1.76 16 7 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -25.84 13.96 55.43 0.77 -25.06 16 9 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 S 1.35 23.96 12.42 -107.50 -1.33 22.62 16 14 O -0.86 -19.55 16.77 -35.23 -0.59 -20.14 16 15 C -0.49 -7.30 4.81 -39.55 -0.19 -7.49 16 16 C 0.00 -0.04 9.74 -39.60 -0.39 -0.43 16 17 C -0.19 -2.04 9.90 -39.39 -0.39 -2.43 16 18 C 0.21 2.48 6.76 -83.67 -0.57 1.91 16 19 N -0.87 -7.30 9.10 32.46 0.30 -7.00 16 20 C 0.00 -0.06 7.31 -39.26 -0.29 -0.35 16 21 F -0.15 -2.19 16.64 2.25 0.04 -2.15 16 22 C -0.04 -0.62 8.18 -39.55 -0.32 -0.94 16 23 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.77 6.36 -51.93 -0.33 0.44 16 26 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 27 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.40 2.25 8.84 -40.82 -0.36 1.89 16 32 H 0.40 3.10 8.32 -40.82 -0.34 2.76 16 33 H 0.14 2.40 7.45 -52.49 -0.39 2.01 16 LS Contribution 295.87 15.07 4.46 4.46 Total: -1.00 -33.67 295.87 -7.31 -40.98 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.88 Total: 1.16 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: -2.40 Total: -31.58 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 1.07 Total: -32.07 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.59 Total: -20.14 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 23.96 SS G_CDS: -1.33 Total: 22.62 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.67 -7.31 -40.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788283.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.433 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds