Wall clock time and date at job start Mon Mar 30 2020 07:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46569 * 2 1 4 4 C 1.52992 * 109.46844 * 120.00089 * 2 1 3 5 5 C 1.50701 * 109.47009 * 185.00150 * 4 2 1 6 6 H 1.08007 * 119.99686 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00214 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99949 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00139 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47272 * 89.99546 * 9 7 5 11 11 H 1.48503 * 109.47366 * 209.99894 * 9 7 5 12 12 H 1.48505 * 109.46848 * 329.99951 * 9 7 5 13 13 S 1.81394 * 109.47072 * 240.00419 * 2 1 3 14 14 O 1.42102 * 109.46859 * 305.94005 * 13 2 1 15 15 C 1.76196 * 103.00548 * 54.99603 * 13 2 1 16 16 C 1.38277 * 119.91464 * 89.99563 * 15 13 2 17 17 C 1.38152 * 120.11015 * 179.72367 * 16 15 13 18 18 C 1.38834 * 119.94875 * 0.26187 * 17 16 15 19 19 N 1.39844 * 120.08042 * 179.97438 * 18 17 16 20 20 C 1.39072 * 119.83932 * 359.97438 * 18 17 16 21 21 F 1.35102 * 120.05554 * 180.02562 * 20 18 17 22 22 C 1.38278 * 119.89045 * 359.97438 * 20 18 17 23 23 H 1.08998 * 109.47088 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47479 * 299.99993 * 1 2 3 25 25 H 1.09005 * 109.46757 * 60.00154 * 1 2 3 26 26 H 1.09006 * 109.47441 * 304.99598 * 4 2 1 27 27 H 1.08992 * 109.47388 * 65.00347 * 4 2 1 28 28 H 0.97001 * 119.99775 * 179.97438 * 8 7 5 29 29 H 1.08002 * 119.94880 * 0.02562 * 16 15 13 30 30 H 1.07998 * 120.02618 * 180.27823 * 17 16 15 31 31 H 0.97006 * 120.00237 * 359.97438 * 19 18 17 32 32 H 0.97002 * 120.00156 * 180.02562 * 19 18 17 33 33 H 1.07996 * 119.97780 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2303 -1.1926 2.3583 8 7 5.5410 -1.1002 2.4134 9 14 3.3015 -2.1078 3.6958 10 1 3.1708 -3.5380 3.3179 11 1 4.0447 -2.0002 4.9770 12 1 1.9503 -1.5127 3.8559 13 16 2.1347 -0.8550 -1.4811 14 8 1.5512 -2.1487 -1.5526 15 6 1.3384 0.0119 -2.7922 16 6 1.9523 1.1102 -3.3656 17 6 1.3341 1.7895 -4.3977 18 6 0.0920 1.3719 -4.8563 19 7 -0.5364 2.0578 -5.9005 20 6 -0.5257 0.2700 -4.2748 21 9 -1.7341 -0.1405 -4.7181 22 6 0.0995 -0.4056 -3.2429 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.6054 -0.2617 2.1370 27 1 1.7517 -1.7714 1.2055 28 1 6.0253 -1.5063 3.1492 29 1 2.9188 1.4348 -3.0094 30 1 1.8169 2.6444 -4.8475 31 1 -0.1047 2.8265 -6.3050 32 1 -1.4044 1.7653 -6.2198 33 1 -0.3787 -1.2618 -2.7906 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695788283.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:32 Heat of formation + Delta-G solvation = -93.754150 kcal Electronic energy + Delta-G solvation = -18369.891386 eV Core-core repulsion = 15242.125641 eV Total energy + Delta-G solvation = -3127.765745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.88304 -40.01684 -36.76830 -36.28849 -35.62596 -34.06571 -31.56389 -30.16001 -29.37360 -24.94279 -24.07904 -23.41849 -22.16204 -19.37790 -18.84465 -18.41915 -18.09257 -17.56274 -16.79959 -16.63390 -16.42624 -16.08078 -15.94007 -14.92215 -14.84279 -14.60508 -14.35322 -14.00467 -13.79898 -13.68177 -13.35262 -13.29891 -13.07438 -12.66141 -12.42536 -12.13566 -11.86288 -11.77489 -11.57150 -11.28854 -10.83344 -10.69755 -9.84197 -9.17196 -8.59762 -8.22809 -6.23928 0.04780 0.23655 1.13666 1.34763 1.39192 1.46528 2.05420 2.39403 2.63188 2.75451 3.07764 3.13851 3.31342 3.75540 4.09344 4.19713 4.23527 4.35245 4.48286 4.67163 4.82275 4.83936 4.98306 5.05120 5.08104 5.15855 5.26871 5.38866 5.43878 5.66350 5.78797 6.32233 6.33740 6.80800 6.84136 7.41491 8.90993 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.037966 B = 0.004814 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.330320 B = 5814.451592 C = 6115.414424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.393 4.393 3 H 0.144 0.856 4 C 0.006 3.994 5 C -0.530 4.530 6 H 0.087 0.913 7 C 0.026 3.974 8 N -0.930 5.930 9 Si 0.912 3.088 10 H -0.281 1.281 11 H -0.278 1.278 12 H -0.258 1.258 13 S 1.375 4.625 14 O -0.921 6.921 15 C -0.499 4.499 16 C 0.007 3.993 17 C -0.183 4.183 18 C 0.221 3.779 19 N -0.855 5.855 20 C -0.030 4.030 21 F -0.156 7.156 22 C -0.059 4.059 23 H 0.029 0.971 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.025 0.975 27 H -0.007 1.007 28 H 0.266 0.734 29 H 0.183 0.817 30 H 0.177 0.823 31 H 0.420 0.580 32 H 0.405 0.595 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 11.192 -16.132 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.511 4.511 3 H 0.162 0.838 4 C -0.033 4.033 5 C -0.568 4.568 6 H 0.105 0.895 7 C -0.173 4.173 8 N -0.570 5.570 9 Si 0.738 3.262 10 H -0.207 1.207 11 H -0.203 1.203 12 H -0.182 1.182 13 S 1.576 4.424 14 O -0.917 6.917 15 C -0.599 4.599 16 C -0.013 4.013 17 C -0.206 4.206 18 C 0.112 3.888 19 N -0.395 5.395 20 C -0.054 4.054 21 F -0.135 7.135 22 C -0.080 4.080 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.012 0.988 28 H 0.076 0.924 29 H 0.200 0.800 30 H 0.194 0.806 31 H 0.252 0.748 32 H 0.235 0.765 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.112 10.345 -16.105 20.420 hybrid contribution -3.197 -1.024 0.848 3.462 sum -10.309 9.320 -15.258 20.638 Atomic orbital electron populations 1.21797 0.94502 1.00600 1.02844 1.27345 1.00662 1.10948 1.12116 0.83818 1.19284 0.95999 0.94202 0.93765 1.21551 0.90577 1.34641 1.10060 0.89453 1.25582 0.95292 0.96597 0.99819 1.69964 1.07468 1.46363 1.33223 0.86224 0.80133 0.79647 0.80151 1.20666 1.20346 1.18213 1.69389 1.10164 0.80532 0.82347 1.92886 1.78816 1.34860 1.85124 1.27545 1.03622 1.10935 1.17757 1.21217 0.99582 0.89114 0.91415 1.21084 0.93790 1.04543 1.01209 1.18043 0.92808 0.89314 0.88589 1.42457 1.24338 1.35398 1.37304 1.17396 0.84668 1.00752 1.02632 1.91386 1.42638 1.90479 1.89043 1.20805 0.95027 0.97534 0.94589 0.95201 0.91593 0.91536 0.95687 0.98823 0.92448 0.79995 0.80553 0.74810 0.76547 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 8.78 71.98 0.63 -4.26 16 2 C -0.39 -14.50 2.81 30.59 0.09 -14.41 16 3 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 4 C 0.01 0.28 3.51 29.85 0.10 0.38 16 5 C -0.53 -27.44 9.09 25.60 0.23 -27.21 16 6 H 0.09 4.38 7.85 -2.91 -0.02 4.36 16 7 C 0.03 1.45 5.47 84.65 0.46 1.92 16 8 N -0.93 -54.10 13.96 21.45 0.30 -53.81 16 9 Si 0.91 44.10 27.47 68.60 1.88 45.98 16 10 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.26 -12.00 6.54 99.48 0.65 -11.35 16 13 S 1.38 48.71 12.42 -56.49 -0.70 48.01 16 14 O -0.92 -43.77 16.77 -148.98 -2.50 -46.27 16 15 C -0.50 -14.30 4.81 22.29 0.11 -14.20 16 16 C 0.01 0.13 9.74 22.26 0.22 0.34 16 17 C -0.18 -2.94 9.90 22.39 0.22 -2.72 16 18 C 0.22 4.44 6.76 38.21 0.26 4.70 16 19 N -0.86 -10.81 9.10 -51.21 -0.47 -11.27 16 20 C -0.03 -0.83 7.31 22.48 0.16 -0.66 16 21 F -0.16 -4.54 16.64 44.97 0.75 -3.79 16 22 C -0.06 -1.91 8.18 22.29 0.18 -1.73 16 23 H 0.03 1.15 8.10 -2.39 -0.02 1.14 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.07 2.07 6.36 -2.38 -0.02 2.06 16 26 H 0.02 1.16 7.20 -2.38 -0.02 1.15 16 27 H -0.01 -0.34 7.57 -2.39 -0.02 -0.35 16 28 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 30 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.42 2.57 8.84 -92.70 -0.82 1.75 16 32 H 0.41 4.92 8.32 -92.71 -0.77 4.15 16 33 H 0.10 3.94 7.45 -2.91 -0.02 3.92 16 Total: -1.00 -75.02 295.87 1.44 -73.58 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -0.50 Total: 5.40 kcal Atomic # 6 Polarization: -60.51 SS G_CDS: 2.67 Total: -57.84 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.17 Total: -65.08 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -2.50 Total: -46.27 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.75 Total: -3.79 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Atomic # 16 Polarization: 48.71 SS G_CDS: -0.70 Total: 48.01 kcal Total: -75.02 1.44 -73.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788283.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.174 kcal (2) G-P(sol) polarization free energy of solvation -75.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds