Wall clock time and date at job start Mon Mar 30 2020 07:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46910 * 2 1 4 4 C 1.52994 * 109.47435 * 239.99267 * 2 1 3 5 5 C 1.50695 * 109.47506 * 175.00310 * 4 2 1 6 6 H 1.08005 * 119.99721 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00453 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00172 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00000 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47391 * 89.99685 * 9 7 5 11 11 H 1.48493 * 109.47413 * 209.99837 * 9 7 5 12 12 H 1.48505 * 109.46976 * 330.00178 * 9 7 5 13 13 S 1.81405 * 109.46635 * 119.99437 * 2 1 3 14 14 O 1.42098 * 109.47314 * 54.05838 * 13 2 1 15 15 C 1.76200 * 103.00040 * 304.99720 * 13 2 1 16 16 C 1.38133 * 119.95272 * 269.97956 * 15 13 2 17 17 C 1.38907 * 119.97430 * 180.02562 * 16 15 13 18 18 N 1.39668 * 120.05970 * 179.97438 * 17 16 15 19 19 C 1.38896 * 119.87844 * 359.97438 * 17 16 15 20 20 C 1.38303 * 119.89906 * 0.03295 * 19 17 16 21 21 F 1.35099 * 119.98591 * 179.97438 * 20 19 17 22 22 C 1.38235 * 119.94560 * 90.00284 * 15 13 2 23 23 H 1.08997 * 109.47429 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47732 * 300.00626 * 1 2 3 25 25 H 1.09006 * 109.46818 * 60.00858 * 1 2 3 26 26 H 1.09000 * 109.47297 * 295.00323 * 4 2 1 27 27 H 1.08998 * 109.46873 * 55.00005 * 4 2 1 28 28 H 0.97005 * 119.99847 * 179.97438 * 8 7 5 29 29 H 1.07999 * 120.01176 * 359.97438 * 16 15 13 30 30 H 0.97000 * 120.00458 * 359.97438 * 18 17 16 31 31 H 0.97003 * 119.99974 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.04786 * 179.97438 * 19 17 16 33 33 H 1.07999 * 119.93967 * 359.72000 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6151 -1.3125 6 1 4.0790 -0.0863 -0.5390 7 6 4.2305 -1.1938 -2.3574 8 7 5.5412 -1.1006 -2.4130 9 14 3.3017 -2.1091 -3.6950 10 1 2.9410 -1.1643 -4.7825 11 1 4.1600 -3.1899 -4.2428 12 1 2.0654 -2.7006 -3.1230 13 16 2.1345 -0.8550 1.4813 14 8 1.5510 -2.1487 1.5528 15 6 1.3382 0.0121 2.7922 16 6 1.9511 1.1092 3.3658 17 6 1.3240 1.7928 4.3997 18 7 1.9423 2.9019 4.9813 19 6 0.0809 1.3714 4.8540 20 6 -0.5280 0.2723 4.2761 21 9 -1.7368 -0.1394 4.7170 22 6 0.1013 -0.4067 3.2454 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.7517 -1.7716 -1.2054 27 1 1.6054 -0.2620 -2.1368 28 1 6.0256 -1.5082 -3.1480 29 1 2.9179 1.4347 3.0112 30 1 2.8106 3.1953 4.6636 31 1 1.5035 3.3789 5.7030 32 1 -0.4089 1.9006 5.6579 33 1 -0.3774 -1.2622 2.7923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:34 Heat of formation + Delta-G solvation = -92.879970 kcal Electronic energy + Delta-G solvation = -18361.761629 eV Core-core repulsion = 15234.033792 eV Total energy + Delta-G solvation = -3127.727838 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.97869 -40.11391 -36.84966 -36.32738 -35.36051 -34.08660 -31.71680 -29.99033 -29.48571 -24.95382 -24.22646 -23.35548 -22.18955 -19.46271 -18.85787 -18.34998 -17.88202 -17.23796 -16.85374 -16.65333 -16.44238 -16.07844 -16.04086 -15.66640 -14.83685 -14.49410 -14.26007 -14.00553 -13.89682 -13.73955 -13.36892 -13.14105 -12.92185 -12.75145 -12.59376 -12.32602 -11.74551 -11.70142 -11.52120 -11.29426 -10.94734 -10.70715 -10.01361 -9.10277 -8.56257 -8.24063 -6.25514 -0.13454 0.32348 1.01327 1.33808 1.39247 1.48041 1.94523 2.38782 2.59947 2.85575 3.00051 3.12539 3.44608 3.98545 4.04513 4.08350 4.16394 4.28811 4.47513 4.48966 4.78145 4.81126 4.95626 5.04316 5.05827 5.15378 5.23217 5.28110 5.41551 5.64520 5.74392 6.31755 6.52276 6.82365 7.03907 7.40139 8.89710 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.005173 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.578863 B = 5411.232659 C = 5908.787931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.389 4.389 3 H 0.146 0.854 4 C 0.005 3.995 5 C -0.532 4.532 6 H 0.087 0.913 7 C 0.027 3.973 8 N -0.930 5.930 9 Si 0.914 3.086 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.270 1.270 13 S 1.374 4.626 14 O -0.913 6.913 15 C -0.386 4.386 16 C -0.125 4.125 17 C 0.239 3.761 18 N -0.853 5.853 19 C -0.209 4.209 20 C 0.112 3.888 21 F -0.151 7.151 22 C -0.177 4.177 23 H 0.030 0.970 24 H 0.067 0.933 25 H 0.068 0.932 26 H -0.004 1.004 27 H 0.026 0.974 28 H 0.267 0.733 29 H 0.177 0.823 30 H 0.416 0.584 31 H 0.411 0.589 32 H 0.158 0.842 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.010 11.472 14.968 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.507 4.507 3 H 0.163 0.837 4 C -0.033 4.033 5 C -0.570 4.570 6 H 0.105 0.895 7 C -0.173 4.173 8 N -0.570 5.570 9 Si 0.740 3.260 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.195 1.195 13 S 1.573 4.427 14 O -0.909 6.909 15 C -0.483 4.483 16 C -0.149 4.149 17 C 0.130 3.870 18 N -0.393 5.393 19 C -0.233 4.233 20 C 0.091 3.909 21 F -0.130 7.130 22 C -0.199 4.199 23 H 0.049 0.951 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.015 0.985 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.194 0.806 30 H 0.248 0.752 31 H 0.242 0.758 32 H 0.175 0.825 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.293 10.621 14.946 19.084 hybrid contribution -2.812 -0.821 -0.911 3.067 sum -8.104 9.801 14.035 18.940 Atomic orbital electron populations 1.21822 0.94218 1.00802 1.03091 1.27291 1.00886 1.10877 1.11631 0.83666 1.19295 0.95996 0.94432 0.93590 1.21536 0.90564 1.34739 1.10169 0.89525 1.25586 0.95303 0.96533 0.99846 1.69964 1.07498 1.46243 1.33249 0.86200 0.79380 0.79553 0.80882 1.18839 1.20871 1.19497 1.69626 1.09828 0.80653 0.82567 1.92907 1.78468 1.34541 1.84937 1.27645 1.01357 1.05990 1.13341 1.20754 1.02256 0.94709 0.97140 1.17529 0.90380 0.88052 0.91035 1.42416 1.24557 1.30479 1.41845 1.20737 0.97384 0.99475 1.05677 1.17623 0.81409 0.96017 0.95822 1.91449 1.42725 1.90129 1.88665 1.20732 0.97235 1.01935 1.00045 0.95074 0.91437 0.91280 0.98526 0.95556 0.92418 0.80597 0.75220 0.75825 0.82479 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 8.78 71.98 0.63 -4.27 16 2 C -0.39 -14.19 2.81 30.59 0.09 -14.11 16 3 H 0.15 4.43 8.14 -2.39 -0.02 4.41 16 4 C 0.01 0.24 3.51 29.84 0.10 0.35 16 5 C -0.53 -27.28 9.09 25.60 0.23 -27.05 16 6 H 0.09 4.31 7.84 -2.91 -0.02 4.28 16 7 C 0.03 1.46 5.47 84.65 0.46 1.92 16 8 N -0.93 -53.65 13.96 21.45 0.30 -53.35 16 9 Si 0.91 43.72 27.47 68.60 1.88 45.61 16 10 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.27 -13.05 6.54 99.48 0.65 -12.40 16 13 S 1.37 48.53 12.42 -56.49 -0.70 47.83 16 14 O -0.91 -43.18 16.77 -148.98 -2.50 -45.68 16 15 C -0.39 -11.28 4.80 22.24 0.11 -11.17 16 16 C -0.13 -2.59 9.60 22.41 0.22 -2.37 16 17 C 0.24 4.23 6.75 38.21 0.26 4.49 16 18 N -0.85 -7.61 9.09 -51.38 -0.47 -8.08 16 19 C -0.21 -4.36 9.87 22.44 0.22 -4.14 16 20 C 0.11 3.19 7.30 22.36 0.16 3.35 16 21 F -0.15 -4.50 17.27 44.97 0.78 -3.73 16 22 C -0.18 -5.83 8.20 22.34 0.18 -5.65 16 23 H 0.03 1.20 8.10 -2.39 -0.02 1.18 16 24 H 0.07 2.10 6.37 -2.39 -0.02 2.08 16 25 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.00 -0.18 7.20 -2.39 -0.02 -0.20 16 27 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 28 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 29 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 30 H 0.42 2.09 8.84 -92.71 -0.82 1.27 16 31 H 0.41 2.03 8.84 -92.71 -0.82 1.21 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.10 3.95 7.45 -2.91 -0.02 3.93 16 Total: -1.00 -73.77 296.83 1.41 -72.35 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -0.55 Total: 3.68 kcal Atomic # 6 Polarization: -61.30 SS G_CDS: 2.67 Total: -58.63 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.17 Total: -61.43 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.50 Total: -45.68 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.78 Total: -3.73 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Atomic # 16 Polarization: 48.53 SS G_CDS: -0.70 Total: 47.83 kcal Total: -73.77 1.41 -72.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.528 kcal (2) G-P(sol) polarization free energy of solvation -73.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds