Wall clock time and date at job start Mon Mar 30 2020 07:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46722 * 2 1 4 4 C 1.53002 * 109.47358 * 240.00097 * 2 1 3 5 5 C 1.50696 * 109.46919 * 174.99744 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00040 * 9 7 5 12 12 H 1.48497 * 109.46870 * 239.99850 * 9 7 5 13 13 S 1.81399 * 109.47128 * 120.00113 * 2 1 3 14 14 O 1.42103 * 109.46815 * 195.94818 * 13 2 1 15 15 C 1.76203 * 103.00089 * 305.00285 * 13 2 1 16 16 C 1.38137 * 119.94797 * 269.72958 * 15 13 2 17 17 C 1.38911 * 119.97000 * 179.70694 * 16 15 13 18 18 N 1.39674 * 120.05775 * 180.31923 * 17 16 15 19 19 C 1.38885 * 119.88239 * 0.54001 * 17 16 15 20 20 C 1.38305 * 119.89843 * 359.75419 * 19 17 16 21 21 F 1.35096 * 119.99077 * 180.02562 * 20 19 17 22 22 C 1.38223 * 119.95032 * 89.99802 * 15 13 2 23 23 H 1.09000 * 109.47210 * 60.00163 * 1 2 3 24 24 H 1.09002 * 109.46722 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47356 * 299.99537 * 1 2 3 26 26 H 1.09000 * 109.46497 * 55.00010 * 4 2 1 27 27 H 1.08999 * 109.46623 * 295.00074 * 4 2 1 28 28 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 29 29 H 1.07998 * 120.01483 * 359.97438 * 16 15 13 30 30 H 0.97004 * 119.99678 * 180.22327 * 18 17 16 31 31 H 0.96997 * 120.00390 * 0.22271 * 18 17 16 32 32 H 1.08000 * 120.05519 * 179.77488 * 19 17 16 33 33 H 1.07997 * 119.94046 * 0.02562 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0853 -0.5395 7 6 4.2305 -1.1925 -2.3583 8 7 3.5760 -1.8317 -3.3031 9 14 6.0921 -1.0599 -2.4373 10 1 6.5837 -0.2896 -1.2668 11 1 6.6864 -2.4208 -2.4200 12 1 6.4861 -0.3636 -3.6883 13 16 2.1347 -0.8552 1.4811 14 8 3.5071 -0.5449 1.6800 15 6 1.3383 0.0117 2.7922 16 6 1.9535 1.1056 3.3694 17 6 1.3234 1.7931 4.3990 18 7 1.9408 2.9034 4.9794 19 6 0.0805 1.3716 4.8533 20 6 -0.5281 0.2720 4.2758 21 9 -1.7373 -0.1392 4.7159 22 6 0.1015 -0.4072 3.2454 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6055 -0.2616 -2.1369 27 1 1.7517 -1.7715 -1.2055 28 1 2.6093 -1.9003 -3.2623 29 1 2.9220 1.4288 3.0174 30 1 1.5015 3.3808 5.7004 31 1 2.8089 3.1971 4.6614 32 1 -0.4103 1.9018 5.6560 33 1 -0.3750 -1.2656 2.7955 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695789184.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:39 Heat of formation + Delta-G solvation = -74.058010 kcal Electronic energy + Delta-G solvation = -18393.478474 eV Core-core repulsion = 15266.566818 eV Total energy + Delta-G solvation = -3126.911656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.89863 -39.14356 -35.04427 -34.82702 -34.49893 -32.08139 -30.61244 -28.77309 -27.02922 -23.15942 -23.09795 -22.38032 -20.95656 -18.34348 -17.40442 -16.87979 -16.42666 -16.23476 -15.62830 -15.48338 -15.15512 -14.78897 -14.45361 -13.69412 -13.63969 -13.14805 -13.02640 -12.81273 -12.37729 -11.88804 -11.75147 -11.52739 -11.17761 -11.13638 -10.84228 -10.65241 -10.60892 -10.08498 -9.98598 -9.29830 -8.95764 -8.50049 -8.33012 -7.75556 -7.66141 -6.34783 -4.05600 0.94084 1.35989 2.34623 3.25659 3.49740 3.52283 3.58527 3.70835 3.71638 4.28345 4.58241 4.63671 4.89073 5.03777 5.27130 5.42429 5.47712 5.59974 5.67860 5.75464 5.91962 6.02279 6.14250 6.33583 6.36196 6.52318 6.65266 6.71863 7.23269 7.25247 7.31547 7.52464 8.15491 8.56544 8.92381 9.66502 11.05762 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028719 B = 0.005225 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.745923 B = 5357.140659 C = 5957.373765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.389 4.389 3 H 0.081 0.919 4 C 0.033 3.967 5 C -0.617 4.617 6 H 0.065 0.935 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 1.069 2.931 10 H -0.287 1.287 11 H -0.285 1.285 12 H -0.288 1.288 13 S 1.334 4.666 14 O -0.833 6.833 15 C -0.382 4.382 16 C -0.141 4.141 17 C 0.226 3.774 18 N -0.876 5.876 19 C -0.216 4.216 20 C 0.126 3.874 21 F -0.141 7.141 22 C -0.138 4.138 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.269 0.731 29 H 0.131 0.869 30 H 0.398 0.602 31 H 0.402 0.598 32 H 0.130 0.870 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 4.147 15.592 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.508 4.508 3 H 0.100 0.900 4 C -0.006 4.006 5 C -0.656 4.656 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.897 3.103 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.215 1.215 13 S 1.529 4.471 14 O -0.829 6.829 15 C -0.476 4.476 16 C -0.164 4.164 17 C 0.120 3.880 18 N -0.415 5.415 19 C -0.240 4.240 20 C 0.105 3.895 21 F -0.120 7.120 22 C -0.160 4.160 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.226 0.774 31 H 0.231 0.769 32 H 0.148 0.852 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.501 2.952 14.810 16.861 hybrid contribution -0.973 3.168 1.250 3.542 sum -8.473 6.120 16.060 19.162 Atomic orbital electron populations 1.21572 0.93325 1.02089 1.01598 1.27322 1.00878 1.09088 1.13473 0.90046 1.18987 0.96932 0.94510 0.90132 1.22423 0.91597 1.39099 1.12439 0.91627 1.25769 1.06845 0.93226 0.92419 1.70753 1.10310 1.40080 1.33840 0.83550 0.74549 0.76619 0.75548 1.21300 1.21163 1.21489 1.69635 0.87060 1.08156 0.82249 1.93079 1.27270 1.80813 1.81691 1.28305 1.02040 1.03959 1.13304 1.20716 1.01049 0.96816 0.97817 1.17575 0.91066 0.87586 0.91781 1.42456 1.24330 1.32249 1.42448 1.20462 0.96944 1.00851 1.05740 1.17433 0.81361 0.94995 0.95691 1.91482 1.42007 1.89794 1.88679 1.20562 0.95239 1.02133 0.98065 0.92513 0.91773 0.93102 0.96182 0.96317 0.92074 0.85117 0.77439 0.76928 0.85222 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.84 37.16 0.33 -1.59 16 2 C -0.39 -7.62 2.81 -26.73 -0.08 -7.69 16 3 H 0.08 1.75 8.14 -51.92 -0.42 1.33 16 4 C 0.03 0.79 3.76 -27.88 -0.10 0.69 16 5 C -0.62 -17.70 8.39 -34.44 -0.29 -17.99 16 6 H 0.07 1.99 6.35 -52.49 -0.33 1.65 16 7 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 8 N -0.91 -27.68 13.65 55.43 0.76 -26.92 16 9 Si 1.07 26.65 29.90 -169.99 -5.08 21.57 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 S 1.33 23.65 12.71 -107.50 -1.37 22.28 16 14 O -0.83 -19.72 15.24 -35.23 -0.54 -20.26 16 15 C -0.38 -5.84 4.80 -39.62 -0.19 -6.04 16 16 C -0.14 -2.21 9.29 -39.37 -0.37 -2.57 16 17 C 0.23 2.93 6.75 -83.80 -0.57 2.36 16 18 N -0.88 -8.39 9.09 32.41 0.29 -8.09 16 19 C -0.22 -2.63 9.87 -39.32 -0.39 -3.02 16 20 C 0.13 1.62 7.30 -39.44 -0.29 1.33 16 21 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 22 C -0.14 -1.78 8.51 -39.47 -0.34 -2.12 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.68 6.37 -51.93 -0.33 0.35 16 26 H 0.02 0.51 8.00 -51.93 -0.42 0.10 16 27 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 28 H 0.27 7.95 7.22 -40.82 -0.29 7.65 16 29 H 0.13 2.26 7.44 -52.49 -0.39 1.87 16 30 H 0.40 2.75 8.84 -40.82 -0.36 2.39 16 31 H 0.40 3.51 8.84 -40.82 -0.36 3.15 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 296.59 15.07 4.47 4.47 Total: -1.00 -35.74 296.59 -7.61 -43.35 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.81 Total: 1.44 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: -2.37 Total: -36.11 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 1.05 Total: -35.01 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.54 Total: -20.26 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 26.65 SS G_CDS: -5.08 Total: 21.57 kcal Atomic # 16 Polarization: 23.65 SS G_CDS: -1.37 Total: 22.28 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.74 -7.61 -43.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789184.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.712 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds