Wall clock time and date at job start Mon Mar 30 2020 07:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46722 * 2 1 4 4 C 1.53002 * 109.47358 * 240.00097 * 2 1 3 5 5 C 1.50696 * 109.46919 * 174.99744 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00040 * 9 7 5 12 12 H 1.48497 * 109.46870 * 239.99850 * 9 7 5 13 13 S 1.81399 * 109.47128 * 120.00113 * 2 1 3 14 14 O 1.42103 * 109.46815 * 195.94818 * 13 2 1 15 15 C 1.76203 * 103.00089 * 305.00285 * 13 2 1 16 16 C 1.38137 * 119.94797 * 269.72958 * 15 13 2 17 17 C 1.38911 * 119.97000 * 179.70694 * 16 15 13 18 18 N 1.39674 * 120.05775 * 180.31923 * 17 16 15 19 19 C 1.38885 * 119.88239 * 0.54001 * 17 16 15 20 20 C 1.38305 * 119.89843 * 359.75419 * 19 17 16 21 21 F 1.35096 * 119.99077 * 180.02562 * 20 19 17 22 22 C 1.38223 * 119.95032 * 89.99802 * 15 13 2 23 23 H 1.09000 * 109.47210 * 60.00163 * 1 2 3 24 24 H 1.09002 * 109.46722 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47356 * 299.99537 * 1 2 3 26 26 H 1.09000 * 109.46497 * 55.00010 * 4 2 1 27 27 H 1.08999 * 109.46623 * 295.00074 * 4 2 1 28 28 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 29 29 H 1.07998 * 120.01483 * 359.97438 * 16 15 13 30 30 H 0.97004 * 119.99678 * 180.22327 * 18 17 16 31 31 H 0.96997 * 120.00390 * 0.22271 * 18 17 16 32 32 H 1.08000 * 120.05519 * 179.77488 * 19 17 16 33 33 H 1.07997 * 119.94046 * 0.02562 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0853 -0.5395 7 6 4.2305 -1.1925 -2.3583 8 7 3.5760 -1.8317 -3.3031 9 14 6.0921 -1.0599 -2.4373 10 1 6.5837 -0.2896 -1.2668 11 1 6.6864 -2.4208 -2.4200 12 1 6.4861 -0.3636 -3.6883 13 16 2.1347 -0.8552 1.4811 14 8 3.5071 -0.5449 1.6800 15 6 1.3383 0.0117 2.7922 16 6 1.9535 1.1056 3.3694 17 6 1.3234 1.7931 4.3990 18 7 1.9408 2.9034 4.9794 19 6 0.0805 1.3716 4.8533 20 6 -0.5281 0.2720 4.2758 21 9 -1.7373 -0.1392 4.7159 22 6 0.1015 -0.4072 3.2454 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6055 -0.2616 -2.1369 27 1 1.7517 -1.7715 -1.2055 28 1 2.6093 -1.9003 -3.2623 29 1 2.9220 1.4288 3.0174 30 1 1.5015 3.3808 5.7004 31 1 2.8089 3.1971 4.6614 32 1 -0.4103 1.9018 5.6560 33 1 -0.3750 -1.2656 2.7955 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789184.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:39 Heat of formation + Delta-G solvation = -99.692814 kcal Electronic energy + Delta-G solvation = -18394.590082 eV Core-core repulsion = 15266.566818 eV Total energy + Delta-G solvation = -3128.023265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.87673 -40.18113 -36.73667 -36.64508 -35.50630 -33.99938 -31.70843 -29.79572 -28.82561 -25.10599 -24.26820 -23.43804 -22.58763 -19.47786 -19.02213 -18.34852 -17.81229 -17.28939 -16.80689 -16.58532 -16.12389 -16.08680 -15.82811 -15.66061 -15.27048 -14.77330 -14.23220 -13.98749 -13.89439 -13.31392 -13.12517 -13.00956 -12.81862 -12.60947 -12.53676 -12.38852 -12.05584 -11.79714 -11.62348 -10.91948 -10.61438 -10.50796 -10.04901 -9.22960 -8.68964 -8.66879 -6.37187 -0.20512 0.32287 0.97092 1.45615 1.53443 1.74265 1.91811 2.50994 2.55122 2.73408 3.01251 3.15917 3.42285 3.94881 3.99211 4.06464 4.27489 4.29465 4.44480 4.57854 4.66943 4.97379 4.97846 5.04398 5.09450 5.17044 5.23646 5.34279 5.42409 5.75318 5.99871 6.24988 6.33673 6.64609 6.81905 7.39514 8.74998 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028719 B = 0.005225 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.745923 B = 5357.140659 C = 5957.373765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.390 4.390 3 H 0.050 0.950 4 C 0.032 3.968 5 C -0.629 4.629 6 H 0.041 0.959 7 C -0.026 4.026 8 N -0.932 5.932 9 Si 1.105 2.895 10 H -0.292 1.292 11 H -0.268 1.268 12 H -0.273 1.273 13 S 1.378 4.622 14 O -0.902 6.902 15 C -0.389 4.389 16 C -0.170 4.170 17 C 0.228 3.772 18 N -0.864 5.864 19 C -0.207 4.207 20 C 0.127 3.873 21 F -0.135 7.135 22 C -0.133 4.133 23 H 0.052 0.948 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.001 0.999 27 H 0.029 0.971 28 H 0.264 0.736 29 H 0.102 0.898 30 H 0.413 0.587 31 H 0.406 0.594 32 H 0.159 0.841 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 4.193 17.362 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.508 4.508 3 H 0.069 0.931 4 C -0.006 4.006 5 C -0.667 4.667 6 H 0.060 0.940 7 C -0.225 4.225 8 N -0.569 5.569 9 Si 0.928 3.072 10 H -0.219 1.219 11 H -0.194 1.194 12 H -0.199 1.199 13 S 1.576 4.424 14 O -0.898 6.898 15 C -0.486 4.486 16 C -0.194 4.194 17 C 0.120 3.880 18 N -0.404 5.404 19 C -0.231 4.231 20 C 0.106 3.894 21 F -0.113 7.113 22 C -0.155 4.155 23 H 0.071 0.929 24 H 0.115 0.885 25 H 0.090 0.910 26 H 0.020 0.980 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.244 0.756 31 H 0.235 0.765 32 H 0.177 0.823 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.348 3.007 16.558 19.251 hybrid contribution -0.512 3.251 0.869 3.404 sum -9.861 6.259 17.427 20.979 Atomic orbital electron populations 1.21599 0.89440 1.04556 1.02513 1.27276 1.04253 1.06675 1.12599 0.93079 1.18904 0.94436 0.95471 0.91818 1.22698 0.94099 1.38341 1.11551 0.94049 1.26970 1.10398 0.92847 0.92263 1.70843 1.10169 1.41414 1.34505 0.83069 0.70717 0.77541 0.75841 1.21854 1.19350 1.19889 1.68653 0.84834 1.07307 0.81567 1.92966 1.31361 1.82350 1.83083 1.27646 1.03303 1.04668 1.12972 1.20639 1.00654 0.98270 0.99864 1.17543 0.91355 0.88027 0.91068 1.42447 1.24399 1.31194 1.42327 1.20780 0.96167 1.00429 1.05711 1.17467 0.81475 0.94969 0.95449 1.91507 1.41570 1.89725 1.88526 1.20835 0.93941 1.02799 0.97898 0.92851 0.88547 0.90953 0.98045 0.95279 0.92668 0.87962 0.75593 0.76511 0.82310 0.80510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 8.84 71.98 0.64 -2.84 16 2 C -0.39 -15.49 2.81 30.60 0.09 -15.41 16 3 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.03 1.59 3.76 29.85 0.11 1.70 16 5 C -0.63 -37.26 8.39 25.60 0.21 -37.04 16 6 H 0.04 2.62 6.35 -2.91 -0.02 2.60 16 7 C -0.03 -1.53 5.46 84.66 0.46 -1.07 16 8 N -0.93 -57.13 13.65 21.45 0.29 -56.84 16 9 Si 1.10 54.42 29.90 68.60 2.05 56.47 16 10 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 S 1.38 49.41 12.71 -56.49 -0.72 48.69 16 14 O -0.90 -44.76 15.24 -148.98 -2.27 -47.03 16 15 C -0.39 -11.49 4.80 22.24 0.11 -11.38 16 16 C -0.17 -5.32 9.29 22.41 0.21 -5.12 16 17 C 0.23 5.47 6.75 38.21 0.26 5.73 16 18 N -0.86 -14.84 9.09 -51.39 -0.47 -15.31 16 19 C -0.21 -4.29 9.87 22.44 0.22 -4.07 16 20 C 0.13 2.79 7.30 22.36 0.16 2.95 16 21 F -0.13 -2.80 17.27 44.97 0.78 -2.02 16 22 C -0.13 -3.01 8.51 22.34 0.19 -2.82 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.07 1.74 6.37 -2.39 -0.02 1.73 16 26 H 0.00 0.07 8.00 -2.39 -0.02 0.05 16 27 H 0.03 1.38 8.01 -2.39 -0.02 1.36 16 28 H 0.26 15.86 7.22 -92.71 -0.67 15.19 16 29 H 0.10 3.74 7.44 -2.91 -0.02 3.72 16 30 H 0.41 4.52 8.84 -92.71 -0.82 3.70 16 31 H 0.41 6.68 8.84 -92.71 -0.82 5.86 16 32 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -79.74 296.59 1.94 -77.81 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -0.39 Total: 7.61 kcal Atomic # 6 Polarization: -72.03 SS G_CDS: 2.66 Total: -69.37 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -0.17 Total: -72.15 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -2.27 Total: -47.03 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 54.42 SS G_CDS: 2.05 Total: 56.47 kcal Atomic # 16 Polarization: 49.41 SS G_CDS: -0.72 Total: 48.69 kcal Total: -79.74 1.94 -77.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789184.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.887 kcal (2) G-P(sol) polarization free energy of solvation -79.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds