Wall clock time and date at job start Mon Mar 30 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 S 1.81406 * 109.46794 * 180.02562 * 15 13 12 17 17 C 1.76196 * 102.99906 * 179.97438 * 16 15 13 18 18 C 1.34170 * 125.24279 * 179.97438 * 17 16 15 19 19 C 1.38553 * 114.70903 * 179.97438 * 18 17 16 20 20 C 1.33238 * 114.99453 * 0.02562 * 19 18 17 21 21 S 1.75857 * 109.75192 * 359.75642 * 20 19 18 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 27 27 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 28 28 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 29 29 H 1.07996 * 122.64887 * 359.95614 * 18 17 16 30 30 H 1.08005 * 122.50264 * 180.02562 * 19 18 17 31 31 H 1.07996 * 125.12306 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 16 2.7106 0.4374 -4.9762 17 6 3.3105 -0.5562 -6.3018 18 6 3.5258 -0.1275 -7.5548 19 6 4.0013 -1.0955 -8.4245 20 6 4.1713 -2.3021 -7.8855 21 16 3.7256 -2.2613 -6.1848 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.7089 1.1611 3.4845 26 1 2.2490 -1.6317 -1.1527 27 1 3.6480 -1.1211 -3.3986 28 1 1.9760 -1.5503 -3.8327 29 1 3.3427 0.8918 -7.8614 30 1 4.2179 -0.8877 -9.4620 31 1 4.5328 -3.1727 -8.4124 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701248597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:15 Heat of formation + Delta-G solvation = -6.823637 kcal Electronic energy + Delta-G solvation = -15488.604064 eV Core-core repulsion = 12794.987991 eV Total energy + Delta-G solvation = -2693.616073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.97204 -37.69160 -34.92156 -32.53585 -30.55064 -29.68327 -28.12034 -25.30666 -24.30280 -21.56698 -19.99177 -19.42783 -18.52136 -17.17106 -16.17394 -15.91965 -15.32445 -15.22457 -14.96447 -14.18568 -13.49451 -13.40381 -13.16145 -12.70336 -12.62006 -12.45494 -12.40753 -11.70743 -11.18043 -11.13990 -10.98737 -10.79554 -10.38649 -10.28998 -10.22090 -9.85551 -9.32637 -9.11316 -8.69905 -8.62099 -8.06511 -7.36767 -6.17422 -4.27351 0.73986 1.12238 1.26952 1.79532 2.46604 2.54847 3.12725 3.21540 3.28554 3.30551 3.89539 4.31843 4.87785 4.98942 5.10226 5.15356 5.16143 5.35224 5.39425 5.82315 6.02671 6.24065 6.75678 6.89254 7.07258 7.32148 7.44824 7.61759 7.83288 8.08029 8.49477 8.67826 8.93655 9.39966 10.88574 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.042109 B = 0.003597 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.788977 B = 7782.851532 C = 8233.389783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.700 5.700 13 C 0.521 3.479 14 O -0.536 6.536 15 C -0.161 4.161 16 S 0.035 5.965 17 C -0.205 4.205 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.220 4.220 21 S 0.100 5.900 22 H 0.016 0.984 23 H 0.027 0.973 24 H 0.092 0.908 25 H 0.265 0.735 26 H 0.391 0.609 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -6.967 -17.935 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.348 5.348 13 C 0.303 3.697 14 O -0.414 6.414 15 C -0.314 4.314 16 S 0.275 5.725 17 C -0.434 4.434 18 C -0.166 4.166 19 C -0.149 4.149 20 C -0.359 4.359 21 S 0.358 5.642 22 H 0.035 0.965 23 H 0.046 0.954 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.224 0.776 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.538 -5.880 -16.493 18.088 hybrid contribution 0.836 -1.460 -0.358 1.720 sum 5.374 -7.340 -16.850 19.149 Atomic orbital electron populations 1.22093 0.98237 0.99246 1.01097 1.18828 0.91175 0.94063 0.79574 0.93115 1.21194 1.32725 1.13349 0.90224 0.91987 1.24893 0.94760 0.94920 0.99098 1.69900 1.35717 1.22316 1.24014 0.86422 0.79171 0.79268 0.82094 1.20504 1.19821 1.21007 1.46472 1.64641 1.13667 1.10008 1.19310 0.79318 0.87294 0.83760 1.90716 1.50884 1.15439 1.84402 1.24041 1.06917 1.02985 0.97430 1.86148 1.79312 1.10575 0.96460 1.26693 1.12016 1.01132 1.03605 1.19896 1.04385 1.01409 0.90891 1.20131 1.01739 0.91970 1.01020 1.25499 1.10926 1.02253 0.97198 1.84376 1.65157 1.04913 1.09738 0.96530 0.95368 0.88967 0.92469 0.77646 0.86859 0.86901 0.83857 0.83998 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.27 6.63 2.56 -69.09 -0.18 6.45 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.58 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.70 -14.11 5.07 -54.93 -0.28 -14.39 16 13 C 0.52 10.13 7.81 -10.98 -0.09 10.05 16 14 O -0.54 -12.61 15.53 5.56 0.09 -12.52 16 15 C -0.16 -2.32 5.51 36.01 0.20 -2.12 16 16 S 0.03 0.51 21.22 -107.50 -2.28 -1.77 16 17 C -0.21 -2.57 6.68 29.30 0.20 -2.38 16 18 C -0.13 -1.42 10.13 -40.90 -0.41 -1.83 16 19 C -0.12 -1.08 10.17 -41.21 -0.42 -1.50 16 20 C -0.22 -2.01 11.21 28.99 0.32 -1.68 16 21 S 0.10 1.07 22.32 -107.50 -2.40 -1.33 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 25 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.39 6.66 8.54 -40.82 -0.35 6.31 16 27 H 0.11 1.41 8.14 -51.92 -0.42 0.99 16 28 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 31 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -30.16 298.66 -8.75 -38.91 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.56 Total: 4.12 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.43 Total: -8.90 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.35 Total: -38.34 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -4.68 Total: -3.10 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.16 -8.75 -38.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701248597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.083 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds