Wall clock time and date at job start Mon Mar 30 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 S 1.81406 * 109.46794 * 180.02562 * 15 13 12 17 17 C 1.76196 * 102.99906 * 179.97438 * 16 15 13 18 18 C 1.34170 * 125.24279 * 179.97438 * 17 16 15 19 19 C 1.38553 * 114.70903 * 179.97438 * 18 17 16 20 20 C 1.33238 * 114.99453 * 0.02562 * 19 18 17 21 21 S 1.75857 * 109.75192 * 359.75642 * 20 19 18 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 27 27 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 28 28 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 29 29 H 1.07996 * 122.64887 * 359.95614 * 18 17 16 30 30 H 1.08005 * 122.50264 * 180.02562 * 19 18 17 31 31 H 1.07996 * 125.12306 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 16 2.7106 0.4374 -4.9762 17 6 3.3105 -0.5562 -6.3018 18 6 3.5258 -0.1275 -7.5548 19 6 4.0013 -1.0955 -8.4245 20 6 4.1713 -2.3021 -7.8855 21 16 3.7256 -2.2613 -6.1848 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.7089 1.1611 3.4845 26 1 2.2490 -1.6317 -1.1527 27 1 3.6480 -1.1211 -3.3986 28 1 1.9760 -1.5503 -3.8327 29 1 3.3427 0.8918 -7.8614 30 1 4.2179 -0.8877 -9.4620 31 1 4.5328 -3.1727 -8.4124 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701248597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:15 Heat of formation + Delta-G solvation = -25.671122 kcal Electronic energy + Delta-G solvation = -15489.421352 eV Core-core repulsion = 12794.987991 eV Total energy + Delta-G solvation = -2694.433362 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.63538 -38.47767 -36.80158 -34.42114 -32.11645 -30.54496 -29.74727 -27.35364 -25.11691 -23.33813 -21.47728 -20.63357 -19.37142 -18.84429 -17.69997 -17.32919 -16.84090 -16.60721 -16.11701 -15.80438 -14.87775 -14.60911 -14.38549 -14.24893 -13.92179 -13.58462 -13.44185 -13.35510 -12.97494 -12.85404 -12.71747 -12.30588 -12.15039 -11.97003 -11.25924 -11.13092 -10.99977 -10.72065 -10.61685 -9.86878 -9.48895 -8.42328 -8.19104 -6.36938 -0.06456 0.07812 0.39833 1.00449 1.44462 1.45255 1.46126 1.56460 1.58875 1.78373 2.30200 2.51271 3.11719 3.75072 3.87754 4.10276 4.23300 4.44781 4.65397 4.72661 4.89982 5.06090 5.08148 5.28149 5.38672 5.49434 5.54757 5.64161 5.84720 6.06532 6.69495 6.79201 7.26750 7.41939 8.87307 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.042109 B = 0.003597 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.788977 B = 7782.851532 C = 8233.389783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H 0.001 0.999 4 C -0.548 4.548 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.263 1.263 11 H -0.287 1.287 12 N -0.695 5.695 13 C 0.518 3.482 14 O -0.581 6.581 15 C -0.140 4.140 16 S -0.019 6.019 17 C -0.229 4.229 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.205 4.205 21 S 0.098 5.902 22 H 0.013 0.987 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.266 0.734 26 H 0.409 0.591 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.149 0.851 30 H 0.172 0.828 31 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.438 -9.569 -19.293 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.019 0.981 4 C -0.587 4.587 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.187 1.187 11 H -0.213 1.213 12 N -0.344 5.344 13 C 0.303 3.697 14 O -0.463 6.463 15 C -0.292 4.292 16 S 0.221 5.779 17 C -0.458 4.458 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.344 4.344 21 S 0.357 5.643 22 H 0.032 0.968 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.245 0.755 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.166 0.834 30 H 0.189 0.811 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 5.801 -8.535 -17.885 20.648 hybrid contribution 0.485 -0.648 -0.094 0.815 sum 6.286 -9.183 -17.979 21.144 Atomic orbital electron populations 1.21916 0.98117 0.99659 0.99718 1.18411 0.91244 0.92042 0.81530 0.98082 1.21539 1.32782 1.13686 0.90642 0.90592 1.25812 0.94845 0.95545 1.02377 1.70054 1.36934 1.23866 1.24691 0.85319 0.79013 0.77999 0.77855 1.19608 1.18725 1.21333 1.46171 1.64707 1.14411 1.09156 1.20030 0.78080 0.86841 0.84734 1.90697 1.52536 1.17720 1.85299 1.23802 1.08433 1.02462 0.94461 1.86303 1.80809 1.12527 0.98290 1.26492 1.14329 1.02035 1.02943 1.20251 1.02900 1.02254 0.90736 1.20409 1.01636 0.91453 1.02190 1.25951 1.09132 1.03224 0.96082 1.84328 1.65145 1.03383 1.11422 0.96840 0.93853 0.91374 0.92496 0.75525 0.84549 0.84337 0.83381 0.81082 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.27 13.86 2.56 44.24 0.11 13.97 16 3 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 4 C -0.55 -28.48 8.73 25.60 0.22 -28.26 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.77 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.24 11.32 21.45 0.24 -52.00 16 8 Si 0.97 41.38 29.54 68.60 2.03 43.40 16 9 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.69 -27.91 5.07 -446.10 -2.26 -30.17 16 13 C 0.52 20.29 7.81 87.66 0.68 20.97 16 14 O -0.58 -28.37 15.53 -3.02 -0.05 -28.42 16 15 C -0.14 -3.88 5.51 71.24 0.39 -3.48 16 16 S -0.02 -0.55 21.22 -56.49 -1.20 -1.75 16 17 C -0.23 -5.44 6.68 66.89 0.45 -4.99 16 18 C -0.12 -2.51 10.13 21.42 0.22 -2.29 16 19 C -0.13 -1.92 10.17 21.22 0.22 -1.71 16 20 C -0.21 -2.99 11.21 66.69 0.75 -2.24 16 21 S 0.10 1.86 22.32 -56.49 -1.26 0.60 16 22 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 23 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 25 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.41 13.34 8.54 -92.70 -0.79 12.54 16 27 H 0.14 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.14 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 30 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -66.99 298.66 2.01 -64.98 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.36 Total: 16.30 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.16 Total: -12.94 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -2.02 Total: -82.16 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.05 Total: -28.42 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.46 Total: -1.16 kcal Total: -66.99 2.01 -64.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701248597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.305 kcal (2) G-P(sol) polarization free energy of solvation -66.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds