Wall clock time and date at job start Mon Mar 30 2020 07:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99453 * 2 1 4 4 C 1.50692 * 109.47160 * 66.05316 * 3 2 1 5 5 H 1.07997 * 120.00273 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00343 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99609 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00565 * 179.97438 * 6 4 3 9 9 H 1.48510 * 109.47163 * 59.99598 * 8 6 4 10 10 H 1.48500 * 109.47565 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46860 * 299.99960 * 8 6 4 12 12 C 1.38992 * 110.99559 * 236.04909 * 2 1 3 13 13 C 1.39006 * 120.17382 * 64.20646 * 12 2 1 14 14 F 1.35096 * 119.99227 * 0.03894 * 13 12 2 15 15 C 1.38369 * 120.00923 * 180.29642 * 13 12 2 16 16 F 1.35102 * 119.81240 * 179.70193 * 15 13 12 17 17 C 1.38920 * 120.36767 * 359.72139 * 15 13 12 18 18 C 1.37590 * 120.34818 * 0.02562 * 17 15 13 19 19 C 1.39913 * 119.97748 * 359.97438 * 18 17 15 20 20 C 1.47174 * 120.17768 * 180.02562 * 19 18 17 21 21 O 1.21544 * 119.99727 * 179.72911 * 20 19 18 22 22 O 1.34784 * 120.00203 * 0.02562 * 20 19 18 23 23 H 1.09000 * 109.46832 * 183.95348 * 1 2 3 24 24 H 1.09003 * 109.47247 * 303.94848 * 1 2 3 25 25 H 1.08996 * 109.47691 * 63.94976 * 1 2 3 26 26 H 1.09002 * 109.46728 * 186.04775 * 3 2 1 27 27 H 1.09001 * 109.47452 * 306.04409 * 3 2 1 28 28 H 0.97000 * 120.00157 * 180.02562 * 7 6 4 29 29 H 1.07995 * 119.82674 * 179.97438 * 17 15 13 30 30 H 1.07997 * 120.01311 * 179.97438 * 18 17 15 31 31 H 0.96706 * 116.99765 * 359.72197 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0741 1.5114 2.0485 6 6 2.0276 3.3491 1.5290 7 7 2.7135 4.0013 0.6158 8 14 1.5827 4.1868 3.1382 9 1 2.1736 3.4292 4.2706 10 1 2.1159 5.5728 3.1388 11 1 0.1054 4.2242 3.2849 12 6 1.9670 -0.7247 -1.0764 13 6 1.7292 -0.2961 -2.3772 14 9 1.0130 0.8280 -2.5975 15 6 2.2214 -1.0235 -3.4464 16 9 1.9827 -0.6066 -4.7091 17 6 2.9591 -2.1803 -3.2287 18 6 3.2079 -2.6153 -1.9473 19 6 2.7172 -1.8910 -0.8555 20 6 2.9811 -2.3520 0.5171 21 8 2.5574 -1.7175 1.4632 22 8 3.6977 -3.4744 0.7249 23 1 -0.3633 -1.0252 0.0709 24 1 -0.3634 0.5739 0.8525 25 1 -0.3634 0.4513 -0.9232 26 1 3.0796 1.3445 -0.1083 27 1 1.5610 1.9274 -0.8309 28 1 2.9886 4.9172 0.7780 29 1 3.3387 -2.7416 -4.0696 30 1 3.7817 -3.5156 -1.7843 31 1 4.0137 -3.9450 -0.0586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704529648.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:40 Heat of formation + Delta-G solvation = -150.602205 kcal Electronic energy + Delta-G solvation = -21141.006790 eV Core-core repulsion = 17444.562752 eV Total energy + Delta-G solvation = -3696.444038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.70391 -49.78113 -41.52190 -39.64141 -37.90465 -37.13835 -34.76221 -31.86276 -31.29061 -29.31194 -27.07867 -25.36172 -24.58139 -22.77561 -22.51019 -20.03840 -19.09118 -18.46247 -18.38411 -17.66706 -17.51548 -16.92856 -16.71134 -16.44659 -16.18579 -16.17286 -15.68298 -15.44725 -14.78741 -14.64850 -14.32117 -14.09678 -13.90919 -13.35046 -13.16667 -12.91572 -12.88595 -12.59939 -12.44846 -12.35337 -12.09544 -11.48288 -11.25671 -10.67762 -10.01361 -9.97510 -9.28583 -8.26270 -6.36426 -0.70094 -0.21318 1.36527 1.41348 1.46047 1.49272 2.25327 2.34944 2.41918 2.63006 2.92841 3.06482 3.18458 3.52218 3.57338 3.71806 4.12438 4.38360 4.47904 4.54468 4.67145 4.79817 4.83172 4.89121 5.05881 5.08514 5.45931 5.59435 5.95543 5.98303 6.50146 6.62256 6.75585 7.03320 7.31734 8.85093 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.007119 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.386628 B = 3932.219662 C = 4956.034761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.500 5.500 3 C 0.216 3.784 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.265 1.265 12 C 0.135 3.865 13 C -0.013 4.013 14 F -0.143 7.143 15 C 0.099 3.901 16 F -0.130 7.130 17 C -0.118 4.118 18 C -0.028 4.028 19 C -0.160 4.160 20 C 0.535 3.465 21 O -0.469 6.469 22 O -0.502 6.502 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.021 0.979 26 H -0.007 1.007 27 H -0.017 1.017 28 H 0.266 0.734 29 H 0.206 0.794 30 H 0.219 0.781 31 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -18.491 -9.857 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.220 5.220 3 C 0.092 3.908 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.190 1.190 12 C 0.038 3.962 13 C -0.036 4.036 14 F -0.122 7.122 15 C 0.077 3.923 16 F -0.108 7.108 17 C -0.136 4.136 18 C -0.046 4.046 19 C -0.163 4.163 20 C 0.374 3.626 21 O -0.352 6.352 22 O -0.317 6.317 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.012 0.988 27 H 0.001 0.999 28 H 0.075 0.925 29 H 0.223 0.777 30 H 0.236 0.764 31 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 2.119 -18.019 -8.460 20.019 hybrid contribution -0.629 1.814 -0.855 2.102 sum 1.491 -16.205 -9.315 18.751 Atomic orbital electron populations 1.22248 0.85387 1.01688 1.00893 1.59586 1.08892 1.16181 1.37348 1.19434 0.92995 0.81993 0.96409 1.21327 1.35369 0.97479 1.02023 0.92026 1.25938 0.94862 0.97828 1.00976 1.70087 1.39068 1.11990 1.36227 0.85377 0.78983 0.77151 0.78755 1.19585 1.20296 1.18975 1.19413 0.95320 0.94339 0.87161 1.19139 1.01896 0.87444 0.95131 1.91465 1.75985 1.49462 1.95282 1.18321 1.00267 0.96313 0.77350 1.91529 1.92627 1.90093 1.36574 1.21483 0.98010 0.93500 1.00632 1.21793 0.94898 0.99352 0.88580 1.20450 1.03586 0.96739 0.95547 1.19969 0.75891 0.78761 0.87945 1.91052 1.46414 1.51536 1.46244 1.84648 1.66139 1.37356 1.43526 0.90500 0.91193 0.96048 0.98843 0.99895 0.92520 0.77718 0.76448 0.70296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.90 9.12 127.69 1.16 3.06 16 2 N -0.50 -23.88 2.64 -723.50 -1.91 -25.79 16 3 C 0.22 12.47 4.23 85.55 0.36 12.83 16 4 C -0.52 -32.02 8.46 25.60 0.22 -31.80 16 5 H 0.06 3.75 7.12 -2.91 -0.02 3.73 16 6 C 0.00 0.12 5.46 84.65 0.46 0.58 16 7 N -0.93 -58.84 13.29 21.45 0.28 -58.55 16 8 Si 0.97 46.90 29.54 68.60 2.03 48.93 16 9 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 12 C 0.13 5.18 4.68 38.72 0.18 5.36 16 13 C -0.01 -0.49 6.69 22.49 0.15 -0.34 16 14 F -0.14 -6.34 13.41 44.97 0.60 -5.74 16 15 C 0.10 2.60 7.30 22.46 0.16 2.76 16 16 F -0.13 -3.56 17.17 44.97 0.77 -2.79 16 17 C -0.12 -1.67 10.00 22.28 0.22 -1.45 16 18 C -0.03 -0.36 9.51 22.52 0.21 -0.14 16 19 C -0.16 -4.37 5.89 -19.99 -0.12 -4.48 16 20 C 0.53 16.59 8.33 70.17 0.58 17.17 16 21 O -0.47 -21.13 15.86 19.69 0.31 -20.81 16 22 O -0.50 -9.80 13.48 -56.96 -0.77 -10.57 16 23 H 0.08 2.81 8.14 -2.39 -0.02 2.80 16 24 H 0.07 3.22 6.76 -2.39 -0.02 3.20 16 25 H 0.02 0.91 6.37 -2.39 -0.02 0.90 16 26 H -0.01 -0.41 8.06 -2.39 -0.02 -0.43 16 27 H -0.02 -1.03 6.33 -2.39 -0.02 -1.04 16 28 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.21 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.22 -0.47 6.34 -2.91 -0.02 -0.49 16 31 H 0.44 1.16 6.87 -74.05 -0.51 0.66 16 Total: -1.00 -88.03 278.73 5.62 -82.41 By element: Atomic # 1 Polarization: -11.34 SS G_CDS: 0.69 Total: -10.65 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 3.60 Total: 3.56 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -1.63 Total: -84.34 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.46 Total: -31.38 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 1.37 Total: -8.53 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -88.03 5.62 -82.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704529648.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.194 kcal (2) G-P(sol) polarization free energy of solvation -88.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds