Wall clock time and date at job start Mon Mar 30 2020 06:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76197 * 102.99787 * 2 1 4 4 C 1.34306 * 125.97855 * 359.97438 * 3 2 1 5 5 N 1.31752 * 115.52071 * 180.02562 * 4 3 2 6 6 C 1.29134 * 117.28320 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.35358 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.32666 * 165.82171 * 7 6 5 9 9 C 1.54477 * 110.37258 * 288.18867 * 7 6 5 10 10 C 1.54512 * 104.06193 * 142.81523 * 9 7 6 11 11 C 1.54477 * 104.06288 * 359.97438 * 10 9 7 12 12 H 1.09001 * 110.46542 * 94.90573 * 11 10 9 13 13 C 1.50697 * 110.37239 * 217.19222 * 11 10 9 14 14 H 1.08003 * 120.00114 * 356.83429 * 13 11 10 15 15 C 1.37880 * 120.00130 * 176.83786 * 13 11 10 16 16 N 1.31512 * 119.99991 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00059 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47162 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47321 * 119.99565 * 17 15 13 20 20 H 1.48500 * 109.46702 * 239.99847 * 17 15 13 21 21 O 1.44423 * 104.80354 * 336.02383 * 11 10 9 22 22 S 1.76149 * 109.28558 * 0.02562 * 6 5 4 23 23 H 1.09000 * 109.47636 * 60.00301 * 1 2 3 24 24 H 1.09006 * 109.47011 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47214 * 300.00002 * 1 2 3 26 26 H 1.07998 * 122.24026 * 0.02562 * 4 3 2 27 27 H 1.09008 * 110.51365 * 261.45658 * 9 7 6 28 28 H 1.08995 * 110.51782 * 24.16654 * 9 7 6 29 29 H 1.09004 * 110.50755 * 241.35140 * 10 9 7 30 30 H 1.08997 * 110.51087 * 118.64857 * 10 9 7 31 31 H 0.96999 * 120.00466 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.3287 2.7301 -0.0005 5 7 1.8532 3.9387 -0.0009 6 6 3.1416 4.0249 -0.0003 7 6 3.9296 5.3095 -0.0012 8 1 4.9722 5.1143 0.2499 9 6 3.8262 6.0028 -1.3777 10 6 3.7631 7.5084 -1.0360 11 6 3.8351 7.5464 0.5067 12 1 4.8631 7.6966 0.8366 13 6 2.9472 8.6378 1.0465 14 1 2.4176 9.2889 0.3667 15 6 2.8110 8.8053 2.4083 16 7 3.4555 8.0123 3.2361 17 14 1.7098 10.1577 3.0775 18 1 1.1017 10.9053 1.9477 19 1 0.6361 9.5561 3.9084 20 1 2.5167 11.0872 3.9083 21 8 3.3550 6.2520 0.9305 22 16 3.8331 2.4048 0.0002 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.2614 2.5652 -0.0005 27 1 4.7068 5.7851 -1.9822 28 1 2.9195 5.6904 -1.8957 29 1 2.8250 7.9402 -1.3850 30 1 4.6123 8.0348 -1.4715 31 1 3.3594 8.1298 4.1941 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712887591.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:52 Heat of formation + Delta-G solvation = -1.212958 kcal Electronic energy + Delta-G solvation = -16135.619552 eV Core-core repulsion = 13442.246776 eV Total energy + Delta-G solvation = -2693.372776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40559 -37.85849 -32.75805 -31.19511 -30.82915 -29.27720 -28.21777 -25.72603 -23.65846 -21.75217 -20.10383 -19.57119 -18.21545 -16.67609 -16.50530 -15.40509 -15.14664 -14.56341 -14.44021 -14.12985 -14.04604 -13.63981 -13.42718 -12.78723 -12.72634 -12.27151 -11.71310 -11.64408 -11.15295 -10.92425 -10.70353 -10.61601 -10.41468 -10.13448 -9.99869 -9.77906 -9.30589 -9.12570 -8.79401 -8.62335 -8.17841 -7.48194 -6.02860 -4.14634 0.70818 0.89793 1.63549 1.85867 2.21506 3.00920 3.31099 3.38904 3.42559 4.41326 4.42411 4.81106 4.82837 4.97195 5.27275 5.31512 5.42530 5.43998 5.54242 5.66326 6.03617 6.04926 6.26625 6.41967 6.59802 6.71981 6.77289 7.44746 7.87841 7.99441 8.15535 8.44886 8.94539 9.55485 11.05199 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.004738 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.415561 B = 5907.844046 C = 6415.904564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.049 6.049 3 C -0.249 4.249 4 C 0.039 3.961 5 N -0.435 5.435 6 C 0.119 3.881 7 C 0.137 3.863 8 H 0.074 0.926 9 C -0.138 4.138 10 C -0.143 4.143 11 C 0.203 3.797 12 H 0.030 0.970 13 C -0.527 4.527 14 H 0.066 0.934 15 C 0.077 3.923 16 N -0.862 5.862 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.283 1.283 21 O -0.326 6.326 22 S 0.103 5.897 23 H 0.086 0.914 24 H 0.111 0.889 25 H 0.087 0.913 26 H 0.166 0.834 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 -14.312 -7.880 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.186 5.814 3 C -0.481 4.481 4 C -0.119 4.119 5 N -0.146 5.146 6 C -0.164 4.164 7 C 0.073 3.927 8 H 0.091 0.909 9 C -0.178 4.178 10 C -0.181 4.181 11 C 0.148 3.852 12 H 0.047 0.953 13 C -0.564 4.564 14 H 0.085 0.915 15 C -0.129 4.129 16 N -0.499 5.499 17 Si 0.721 3.279 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.209 1.209 21 O -0.245 6.245 22 S 0.357 5.643 23 H 0.105 0.895 24 H 0.129 0.871 25 H 0.106 0.894 26 H 0.183 0.817 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.216 -15.347 -7.499 17.083 hybrid contribution -2.287 1.517 0.381 2.771 sum -2.503 -13.830 -7.119 15.755 Atomic orbital electron populations 1.23726 0.94679 1.07204 1.06232 1.85052 1.06365 0.97095 1.92897 1.27205 1.00094 1.02926 1.17913 1.21795 1.00708 0.85399 1.04042 1.66180 1.10439 1.23692 1.14336 1.28219 0.91484 0.96643 1.00016 1.21337 0.93576 0.85364 0.92397 0.90856 1.22929 1.01602 0.97279 0.95944 1.23040 1.01476 0.93304 1.00319 1.20640 0.95751 0.81825 0.87013 0.95253 1.21062 1.30343 1.13151 0.91840 0.91544 1.25091 0.95025 0.95617 0.97185 1.70034 1.40474 1.36623 1.02733 0.86526 0.80625 0.81681 0.79091 1.19537 1.20843 1.20863 1.89691 1.70272 1.16193 1.48336 1.84804 1.05489 1.02893 1.71150 0.89513 0.87085 0.89420 0.81653 0.91587 0.91261 0.91326 0.92285 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.47 101.05 0.96 -0.21 16 2 S -0.05 -0.56 22.81 -107.50 -2.45 -3.02 16 3 C -0.25 -3.71 6.85 29.35 0.20 -3.51 16 4 C 0.04 0.64 10.71 -18.97 -0.20 0.44 16 5 N -0.43 -8.74 10.53 -10.47 -0.11 -8.85 16 6 C 0.12 2.30 6.47 -13.41 -0.09 2.21 16 7 C 0.14 2.81 3.84 -27.11 -0.10 2.71 16 8 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 9 C -0.14 -2.51 6.62 -25.16 -0.17 -2.68 16 10 C -0.14 -2.96 6.62 -25.16 -0.17 -3.13 16 11 C 0.20 5.24 3.11 -27.11 -0.08 5.15 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.53 -14.88 8.78 -34.44 -0.30 -15.18 16 14 H 0.07 1.82 7.59 -52.48 -0.40 1.42 16 15 C 0.08 2.20 5.42 -17.82 -0.10 2.10 16 16 N -0.86 -25.87 12.94 55.43 0.72 -25.16 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 O -0.33 -8.67 10.54 -35.23 -0.37 -9.05 16 22 S 0.10 1.61 23.43 -107.50 -2.52 -0.91 16 23 H 0.09 0.63 8.06 -51.92 -0.42 0.22 16 24 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 25 H 0.09 0.69 8.06 -51.92 -0.42 0.27 16 26 H 0.17 2.23 7.00 -52.49 -0.37 1.87 16 27 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.07 1.26 7.86 -51.93 -0.41 0.85 16 29 H 0.07 1.45 7.72 -51.93 -0.40 1.04 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 294.31 15.07 4.44 4.44 Total: -1.00 -32.29 294.31 -9.03 -41.32 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -3.66 Total: -3.28 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -0.05 Total: -12.10 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.61 Total: -34.01 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.37 Total: -9.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -4.97 Total: -3.93 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.29 -9.03 -41.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712887591.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.107 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds