Wall clock time and date at job start Mon Mar 30 2020 06:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76197 * 102.99787 * 2 1 4 4 C 1.34306 * 125.97855 * 359.97438 * 3 2 1 5 5 N 1.31752 * 115.52071 * 180.02562 * 4 3 2 6 6 C 1.29134 * 117.28320 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.35358 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.32666 * 165.82171 * 7 6 5 9 9 C 1.54477 * 110.37258 * 288.18867 * 7 6 5 10 10 C 1.54512 * 104.06193 * 142.81523 * 9 7 6 11 11 C 1.54477 * 104.06288 * 359.97438 * 10 9 7 12 12 H 1.09001 * 110.46542 * 94.90573 * 11 10 9 13 13 C 1.50697 * 110.37239 * 217.19222 * 11 10 9 14 14 H 1.08003 * 120.00114 * 356.83429 * 13 11 10 15 15 C 1.37880 * 120.00130 * 176.83786 * 13 11 10 16 16 N 1.31512 * 119.99991 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00059 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47162 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47321 * 119.99565 * 17 15 13 20 20 H 1.48500 * 109.46702 * 239.99847 * 17 15 13 21 21 O 1.44423 * 104.80354 * 336.02383 * 11 10 9 22 22 S 1.76149 * 109.28558 * 0.02562 * 6 5 4 23 23 H 1.09000 * 109.47636 * 60.00301 * 1 2 3 24 24 H 1.09006 * 109.47011 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47214 * 300.00002 * 1 2 3 26 26 H 1.07998 * 122.24026 * 0.02562 * 4 3 2 27 27 H 1.09008 * 110.51365 * 261.45658 * 9 7 6 28 28 H 1.08995 * 110.51782 * 24.16654 * 9 7 6 29 29 H 1.09004 * 110.50755 * 241.35140 * 10 9 7 30 30 H 1.08997 * 110.51087 * 118.64857 * 10 9 7 31 31 H 0.96999 * 120.00466 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.3287 2.7301 -0.0005 5 7 1.8532 3.9387 -0.0009 6 6 3.1416 4.0249 -0.0003 7 6 3.9296 5.3095 -0.0012 8 1 4.9722 5.1143 0.2499 9 6 3.8262 6.0028 -1.3777 10 6 3.7631 7.5084 -1.0360 11 6 3.8351 7.5464 0.5067 12 1 4.8631 7.6966 0.8366 13 6 2.9472 8.6378 1.0465 14 1 2.4176 9.2889 0.3667 15 6 2.8110 8.8053 2.4083 16 7 3.4555 8.0123 3.2361 17 14 1.7098 10.1577 3.0775 18 1 1.1017 10.9053 1.9477 19 1 0.6361 9.5561 3.9084 20 1 2.5167 11.0872 3.9083 21 8 3.3550 6.2520 0.9305 22 16 3.8331 2.4048 0.0002 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.2614 2.5652 -0.0005 27 1 4.7068 5.7851 -1.9822 28 1 2.9195 5.6904 -1.8957 29 1 2.8250 7.9402 -1.3850 30 1 4.6123 8.0348 -1.4715 31 1 3.3594 8.1298 4.1941 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712887591.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:52 Heat of formation + Delta-G solvation = -22.481767 kcal Electronic energy + Delta-G solvation = -16136.541837 eV Core-core repulsion = 13442.246776 eV Total energy + Delta-G solvation = -2694.295061 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.80296 -39.52187 -34.81283 -32.79185 -32.40088 -30.37601 -29.44511 -27.47294 -25.25777 -23.35912 -21.84136 -20.87919 -19.59219 -18.66295 -17.70558 -16.89050 -16.69862 -16.22365 -15.86399 -15.63358 -15.51631 -14.53684 -14.43360 -14.30883 -14.27816 -13.63254 -13.52229 -12.88130 -12.81314 -12.57340 -12.43539 -12.19254 -12.03191 -11.64780 -11.48584 -11.26372 -11.06950 -10.75717 -10.56117 -10.17138 -9.99700 -8.47864 -8.17623 -6.36813 -0.57634 -0.19409 0.42399 0.69374 1.33680 1.39048 1.40985 1.53261 1.69555 2.40018 3.01991 3.14748 3.62689 3.90516 4.02008 4.10283 4.15645 4.23993 4.28315 4.48143 4.51784 4.72139 4.84677 4.96077 4.97648 5.08138 5.19765 5.50963 5.73334 6.12463 6.46454 6.72060 6.89017 7.38078 8.91250 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.004738 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.415561 B = 5907.844046 C = 6415.904564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.043 6.043 3 C -0.240 4.240 4 C 0.015 3.985 5 N -0.469 5.469 6 C 0.078 3.922 7 C 0.128 3.872 8 H 0.084 0.916 9 C -0.124 4.124 10 C -0.135 4.135 11 C 0.194 3.806 12 H 0.005 0.995 13 C -0.549 4.549 14 H 0.067 0.933 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.962 3.038 18 H -0.260 1.260 19 H -0.285 1.285 20 H -0.272 1.272 21 O -0.369 6.369 22 S 0.148 5.852 23 H 0.096 0.904 24 H 0.140 0.860 25 H 0.090 0.910 26 H 0.188 0.812 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 -15.829 -8.924 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.192 5.808 3 C -0.472 4.472 4 C -0.143 4.143 5 N -0.183 5.183 6 C -0.204 4.204 7 C 0.066 3.934 8 H 0.102 0.898 9 C -0.164 4.164 10 C -0.173 4.173 11 C 0.138 3.862 12 H 0.023 0.977 13 C -0.586 4.586 14 H 0.085 0.915 15 C -0.180 4.180 16 N -0.540 5.540 17 Si 0.786 3.214 18 H -0.184 1.184 19 H -0.211 1.211 20 H -0.197 1.197 21 O -0.288 6.288 22 S 0.400 5.600 23 H 0.115 0.885 24 H 0.158 0.842 25 H 0.109 0.891 26 H 0.205 0.795 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.981 -16.869 -8.564 18.943 hybrid contribution -2.070 1.733 0.678 2.783 sum -3.051 -15.136 -7.886 17.337 Atomic orbital electron populations 1.23917 0.91321 1.09267 1.06905 1.85117 1.09945 0.93821 1.91871 1.27667 0.99621 1.04925 1.15028 1.22053 1.01949 0.84669 1.05604 1.66129 1.11367 1.26144 1.14637 1.27873 0.91796 0.97824 1.02925 1.21535 0.94072 0.85454 0.92350 0.89847 1.22869 1.03381 0.94892 0.95226 1.22914 1.02114 0.95562 0.96701 1.20559 0.93775 0.81629 0.90223 0.97734 1.21509 1.30453 1.14300 0.92384 0.91501 1.25970 0.96455 0.98016 0.97572 1.70171 1.42322 1.38663 1.02890 0.85463 0.78552 0.78824 0.78526 1.18421 1.21059 1.19707 1.89568 1.71129 1.17357 1.50762 1.84524 1.05317 1.00013 1.70118 0.88533 0.84194 0.89103 0.79497 0.87622 0.91416 0.92204 0.89713 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.47 113.37 1.07 -0.69 16 2 S -0.04 -0.88 22.81 -56.49 -1.29 -2.16 16 3 C -0.24 -6.74 6.85 66.92 0.46 -6.28 16 4 C 0.02 0.49 10.71 83.81 0.90 1.38 16 5 N -0.47 -18.99 10.53 -187.04 -1.97 -20.96 16 6 C 0.08 3.00 6.47 88.50 0.57 3.57 16 7 C 0.13 5.35 3.84 30.35 0.12 5.46 16 8 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 9 C -0.12 -4.43 6.62 31.61 0.21 -4.22 16 10 C -0.13 -5.56 6.62 31.61 0.21 -5.35 16 11 C 0.19 10.31 3.11 30.35 0.09 10.40 16 12 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 13 C -0.55 -31.88 8.78 25.60 0.22 -31.66 16 14 H 0.07 3.74 7.59 -2.91 -0.02 3.72 16 15 C 0.02 1.28 5.42 84.66 0.46 1.74 16 16 N -0.90 -56.00 12.94 21.45 0.28 -55.72 16 17 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 O -0.37 -20.32 10.54 -148.98 -1.57 -21.90 16 22 S 0.15 4.42 23.43 -56.49 -1.32 3.10 16 23 H 0.10 1.08 8.06 -2.39 -0.02 1.06 16 24 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 1.14 8.06 -2.39 -0.02 1.12 16 26 H 0.19 4.78 7.00 -2.91 -0.02 4.76 16 27 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 28 H 0.07 2.42 7.86 -2.39 -0.02 2.40 16 29 H 0.06 2.53 7.72 -2.39 -0.02 2.51 16 30 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -72.45 294.31 1.60 -70.84 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.13 Total: 5.18 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 4.32 Total: -25.64 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.69 Total: -76.68 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.57 Total: -21.90 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -2.61 Total: 0.93 kcal Total: -72.45 1.60 -70.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712887591.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.362 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds