Wall clock time and date at job start Mon Mar 30 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76208 * 102.99996 * 2 1 4 4 C 1.34302 * 125.97276 * 0.02562 * 3 2 1 5 5 N 1.31764 * 115.51643 * 179.97438 * 4 3 2 6 6 C 1.29127 * 117.28361 * 0.02562 * 5 4 3 7 7 C 1.50697 * 125.35412 * 180.02562 * 6 5 4 8 8 H 1.09006 * 110.54954 * 193.55058 * 7 6 5 9 9 C 1.54996 * 110.61957 * 70.50124 * 7 6 5 10 10 C 1.54808 * 102.09047 * 204.47644 * 9 7 6 11 11 C 1.54099 * 104.18860 * 20.87482 * 10 9 7 12 12 H 1.08999 * 109.88157 * 242.60695 * 11 10 9 13 13 C 1.50705 * 109.87618 * 121.45790 * 11 10 9 14 14 H 1.07994 * 120.00379 * 0.71725 * 13 11 10 15 15 C 1.37876 * 119.99805 * 180.71616 * 13 11 10 16 16 N 1.31520 * 120.00004 * 180.02562 * 15 13 11 17 17 Si 1.86802 * 120.00206 * 359.97438 * 15 13 11 18 18 H 1.48499 * 109.46809 * 90.00317 * 17 15 13 19 19 H 1.48501 * 109.47479 * 209.99903 * 17 15 13 20 20 H 1.48499 * 109.47278 * 330.00549 * 17 15 13 21 21 O 1.43743 * 107.29496 * 2.03503 * 11 10 9 22 22 S 1.76151 * 109.28616 * 359.97438 * 6 5 4 23 23 H 1.08998 * 109.47002 * 299.99893 * 1 2 3 24 24 H 1.09003 * 109.46958 * 60.00062 * 1 2 3 25 25 H 1.08992 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.07996 * 122.24467 * 0.23492 * 4 3 2 27 27 H 1.09003 * 110.90578 * 322.66660 * 9 7 6 28 28 H 1.08995 * 110.90936 * 86.27422 * 9 7 6 29 29 H 1.09007 * 110.48515 * 262.20371 * 10 9 7 30 30 H 1.08997 * 110.60250 * 139.61249 * 10 9 7 31 31 H 0.96995 * 119.99948 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.3288 2.7301 0.0005 5 7 1.8533 3.9389 0.0009 6 6 3.1417 4.0250 0.0003 7 6 3.9297 5.3096 0.0012 8 1 4.9755 5.1171 -0.2387 9 6 3.8031 6.0267 1.3695 10 6 4.0846 7.5009 0.9902 11 6 3.8049 7.5614 -0.5240 12 1 4.7171 7.8251 -1.0592 13 6 2.7296 8.5790 -0.8061 14 1 2.2918 9.1412 0.0054 15 6 2.3049 8.7923 -2.1004 16 7 1.3669 9.6807 -2.3467 17 14 3.0627 7.8205 -3.5042 18 1 2.2859 6.5731 -3.7186 19 1 3.0369 8.6386 -4.7433 20 1 4.4675 7.4770 -3.1669 21 8 3.3605 6.2558 -0.9290 22 16 3.8332 2.4049 -0.0002 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2615 2.5652 0.0047 27 1 2.7978 5.9148 1.7757 28 1 4.5489 5.6567 2.0730 29 1 5.1241 7.7561 1.1966 30 1 3.4142 8.1703 1.5291 31 1 1.0684 9.8310 -3.2572 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712887592.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:54 Heat of formation + Delta-G solvation = 3.264356 kcal Electronic energy + Delta-G solvation = -16258.524286 eV Core-core repulsion = 13565.345661 eV Total energy + Delta-G solvation = -2693.178625 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.56039 -38.18985 -32.73644 -31.50402 -31.06768 -29.45611 -28.49895 -25.91197 -23.64424 -21.90159 -20.08129 -19.73028 -18.36111 -17.15419 -16.62533 -15.52563 -15.33850 -14.75717 -14.62189 -14.21241 -13.91857 -13.70275 -13.56884 -12.94974 -12.77101 -12.52974 -11.90457 -11.75292 -11.30060 -11.05373 -10.79512 -10.77363 -10.39678 -10.20890 -9.92104 -9.79247 -9.48540 -9.36285 -8.91612 -8.60892 -8.44249 -7.57653 -6.09910 -4.17858 0.57815 0.78930 1.51546 1.73605 2.12674 2.88527 3.42340 3.48913 3.58718 4.25674 4.50370 4.72350 4.76685 4.77782 5.16125 5.19709 5.29871 5.37407 5.40296 5.45185 5.82873 5.87294 6.09552 6.19190 6.38394 6.59814 6.62845 7.11930 7.58628 7.86377 8.08525 8.43066 8.90553 9.53154 11.00447 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.005360 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.169048 B = 5222.411302 C = 5657.927641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.047 6.047 3 C -0.245 4.245 4 C 0.039 3.961 5 N -0.429 5.429 6 C 0.108 3.892 7 C 0.144 3.856 8 H 0.079 0.921 9 C -0.134 4.134 10 C -0.133 4.133 11 C 0.162 3.838 12 H 0.035 0.965 13 C -0.514 4.514 14 H 0.081 0.919 15 C 0.085 3.915 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.298 1.298 20 H -0.266 1.266 21 O -0.360 6.360 22 S 0.104 5.896 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.168 0.832 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -18.443 6.343 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.188 5.812 3 C -0.478 4.478 4 C -0.120 4.120 5 N -0.140 5.140 6 C -0.174 4.174 7 C 0.081 3.919 8 H 0.096 0.904 9 C -0.173 4.173 10 C -0.171 4.171 11 C 0.107 3.893 12 H 0.053 0.947 13 C -0.551 4.551 14 H 0.099 0.901 15 C -0.120 4.120 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.200 1.200 19 H -0.225 1.225 20 H -0.191 1.191 21 O -0.281 6.281 22 S 0.357 5.643 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.130 0.870 26 H 0.185 0.815 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.319 -19.348 6.024 20.720 hybrid contribution -1.491 0.441 -0.706 1.708 sum 2.828 -18.907 5.318 19.843 Atomic orbital electron populations 1.23741 0.94493 1.07313 1.06337 1.85081 1.06551 0.96813 1.92714 1.27258 0.99977 1.03111 1.17425 1.21827 1.00845 0.85269 1.04041 1.66183 1.10330 1.23809 1.13719 1.28125 0.91607 0.96570 1.01136 1.21440 0.93374 0.84787 0.92288 0.90357 1.23071 1.02681 0.96221 0.95351 1.22877 1.00696 0.94839 0.98715 1.20981 0.96493 0.81337 0.90491 0.94735 1.21107 1.21715 1.17768 0.94544 0.90135 1.25054 0.93999 0.93645 0.99306 1.69923 1.28624 1.33233 1.21031 0.86443 0.80686 0.79854 0.80292 1.20029 1.22512 1.19069 1.89197 1.72593 1.16631 1.49641 1.84781 1.05544 1.02687 1.71249 0.89402 0.89362 0.86993 0.81452 0.90196 0.91230 0.92309 0.90283 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.47 101.05 0.96 -0.15 16 2 S -0.05 -0.51 22.81 -107.50 -2.45 -2.96 16 3 C -0.25 -3.47 6.85 29.34 0.20 -3.27 16 4 C 0.04 0.61 10.71 -18.97 -0.20 0.41 16 5 N -0.43 -8.34 10.53 -10.47 -0.11 -8.45 16 6 C 0.11 1.97 6.61 -13.42 -0.09 1.88 16 7 C 0.14 2.71 3.89 -26.83 -0.10 2.61 16 8 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 9 C -0.13 -2.30 6.58 -24.72 -0.16 -2.46 16 10 C -0.13 -2.57 6.63 -25.20 -0.17 -2.74 16 11 C 0.16 3.91 2.70 -27.31 -0.07 3.83 16 12 H 0.04 0.83 7.19 -51.93 -0.37 0.46 16 13 C -0.51 -14.79 9.36 -34.44 -0.32 -15.11 16 14 H 0.08 2.45 7.58 -52.49 -0.40 2.05 16 15 C 0.08 2.52 5.47 -17.82 -0.10 2.43 16 16 N -0.89 -27.72 13.96 55.43 0.77 -26.94 16 17 Si 0.90 23.62 26.28 -169.99 -4.47 19.15 16 18 H -0.27 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 20 H -0.27 -6.67 6.53 56.52 0.37 -6.30 16 21 O -0.36 -8.79 8.73 -35.23 -0.31 -9.10 16 22 S 0.10 1.51 23.43 -107.50 -2.52 -1.01 16 23 H 0.09 0.61 8.05 -51.92 -0.42 0.19 16 24 H 0.09 0.66 8.06 -51.92 -0.42 0.24 16 25 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.17 2.20 7.00 -52.49 -0.37 1.83 16 27 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.58 7.40 -51.93 -0.38 1.20 16 31 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 288.98 15.07 4.35 4.35 Total: -1.00 -33.18 288.98 -8.42 -41.60 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -3.64 Total: -4.07 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -0.06 Total: -12.58 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.66 Total: -35.39 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.31 Total: -9.10 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.47 Total: 19.15 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -4.97 Total: -3.97 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.18 -8.42 -41.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712887592.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.866 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds