Wall clock time and date at job start Mon Mar 30 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76208 * 102.99996 * 2 1 4 4 C 1.34302 * 125.97276 * 0.02562 * 3 2 1 5 5 N 1.31764 * 115.51643 * 179.97438 * 4 3 2 6 6 C 1.29127 * 117.28361 * 0.02562 * 5 4 3 7 7 C 1.50697 * 125.35412 * 180.02562 * 6 5 4 8 8 H 1.09006 * 110.54954 * 193.55058 * 7 6 5 9 9 C 1.54996 * 110.61957 * 70.50124 * 7 6 5 10 10 C 1.54808 * 102.09047 * 204.47644 * 9 7 6 11 11 C 1.54099 * 104.18860 * 20.87482 * 10 9 7 12 12 H 1.08999 * 109.88157 * 242.60695 * 11 10 9 13 13 C 1.50705 * 109.87618 * 121.45790 * 11 10 9 14 14 H 1.07994 * 120.00379 * 0.71725 * 13 11 10 15 15 C 1.37876 * 119.99805 * 180.71616 * 13 11 10 16 16 N 1.31520 * 120.00004 * 180.02562 * 15 13 11 17 17 Si 1.86802 * 120.00206 * 359.97438 * 15 13 11 18 18 H 1.48499 * 109.46809 * 90.00317 * 17 15 13 19 19 H 1.48501 * 109.47479 * 209.99903 * 17 15 13 20 20 H 1.48499 * 109.47278 * 330.00549 * 17 15 13 21 21 O 1.43743 * 107.29496 * 2.03503 * 11 10 9 22 22 S 1.76151 * 109.28616 * 359.97438 * 6 5 4 23 23 H 1.08998 * 109.47002 * 299.99893 * 1 2 3 24 24 H 1.09003 * 109.46958 * 60.00062 * 1 2 3 25 25 H 1.08992 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.07996 * 122.24467 * 0.23492 * 4 3 2 27 27 H 1.09003 * 110.90578 * 322.66660 * 9 7 6 28 28 H 1.08995 * 110.90936 * 86.27422 * 9 7 6 29 29 H 1.09007 * 110.48515 * 262.20371 * 10 9 7 30 30 H 1.08997 * 110.60250 * 139.61249 * 10 9 7 31 31 H 0.96995 * 119.99948 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.3288 2.7301 0.0005 5 7 1.8533 3.9389 0.0009 6 6 3.1417 4.0250 0.0003 7 6 3.9297 5.3096 0.0012 8 1 4.9755 5.1171 -0.2387 9 6 3.8031 6.0267 1.3695 10 6 4.0846 7.5009 0.9902 11 6 3.8049 7.5614 -0.5240 12 1 4.7171 7.8251 -1.0592 13 6 2.7296 8.5790 -0.8061 14 1 2.2918 9.1412 0.0054 15 6 2.3049 8.7923 -2.1004 16 7 1.3669 9.6807 -2.3467 17 14 3.0627 7.8205 -3.5042 18 1 2.2859 6.5731 -3.7186 19 1 3.0369 8.6386 -4.7433 20 1 4.4675 7.4770 -3.1669 21 8 3.3605 6.2558 -0.9290 22 16 3.8332 2.4049 -0.0002 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2615 2.5652 0.0047 27 1 2.7978 5.9148 1.7757 28 1 4.5489 5.6567 2.0730 29 1 5.1241 7.7561 1.1966 30 1 3.4142 8.1703 1.5291 31 1 1.0684 9.8310 -3.2572 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712887592.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:54 Heat of formation + Delta-G solvation = -19.610316 kcal Electronic energy + Delta-G solvation = -16259.516206 eV Core-core repulsion = 13565.345661 eV Total energy + Delta-G solvation = -2694.170545 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.88917 -39.73022 -34.85419 -33.01953 -32.58234 -30.62761 -29.54388 -27.55309 -25.18411 -23.36162 -21.80845 -20.96068 -19.67157 -19.13192 -17.80303 -16.93364 -16.83071 -16.24994 -15.96418 -15.66510 -15.42617 -14.80809 -14.58877 -14.44822 -14.27246 -13.76338 -13.57264 -12.93639 -12.83502 -12.71929 -12.58594 -12.19537 -11.79183 -11.68630 -11.61768 -11.39707 -11.23028 -10.87314 -10.58546 -10.31616 -10.02337 -8.50632 -8.37000 -6.48016 -0.61183 -0.22419 0.38572 0.66397 1.30524 1.30920 1.40253 1.47852 1.66273 2.34900 2.84073 3.09554 3.48331 3.84990 3.92664 4.06601 4.13004 4.21693 4.26226 4.34378 4.44192 4.58849 4.82719 4.90070 4.94550 5.04590 5.19026 5.38322 5.54883 6.18578 6.28993 6.65360 6.73335 7.27032 8.77555 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.005360 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.169048 B = 5222.411302 C = 5657.927641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.040 6.040 3 C -0.240 4.240 4 C 0.014 3.986 5 N -0.472 5.472 6 C 0.069 3.931 7 C 0.135 3.865 8 H 0.110 0.890 9 C -0.122 4.122 10 C -0.129 4.129 11 C 0.160 3.840 12 H 0.041 0.959 13 C -0.523 4.523 14 H 0.044 0.956 15 C 0.029 3.971 16 N -0.939 5.939 17 Si 0.958 3.042 18 H -0.291 1.291 19 H -0.289 1.289 20 H -0.244 1.244 21 O -0.394 6.394 22 S 0.162 5.838 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.140 0.860 26 H 0.184 0.816 27 H 0.059 0.941 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.815 -21.599 6.765 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.196 5.804 3 C -0.472 4.472 4 C -0.145 4.145 5 N -0.185 5.185 6 C -0.213 4.213 7 C 0.074 3.926 8 H 0.128 0.872 9 C -0.161 4.161 10 C -0.167 4.167 11 C 0.104 3.896 12 H 0.058 0.942 13 C -0.561 4.561 14 H 0.063 0.937 15 C -0.170 4.170 16 N -0.579 5.579 17 Si 0.785 3.215 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.167 1.167 21 O -0.315 6.315 22 S 0.415 5.585 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.158 0.842 26 H 0.201 0.799 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.987 -22.515 6.463 24.177 hybrid contribution -2.077 1.196 -0.737 2.507 sum 3.909 -21.319 5.726 22.418 Atomic orbital electron populations 1.23918 0.91501 1.09258 1.06864 1.85123 1.09776 0.93771 1.91729 1.27722 0.99932 1.04913 1.14677 1.22011 1.01917 0.84728 1.05808 1.66142 1.11708 1.26235 1.14406 1.27918 0.91768 0.98088 1.03537 1.21788 0.94738 0.84426 0.91645 0.87249 1.23023 1.03006 0.94456 0.95642 1.22818 1.02516 0.96201 0.95170 1.20864 0.94441 0.80531 0.93779 0.94176 1.21466 1.22229 1.18880 0.93484 0.93729 1.25868 0.94580 0.94634 1.01965 1.70045 1.30732 1.35468 1.21641 0.85503 0.80751 0.77600 0.77647 1.21743 1.21551 1.16725 1.89050 1.73744 1.17325 1.51394 1.84444 1.04686 0.99465 1.69949 0.88644 0.89136 0.84206 0.79902 0.92248 0.86646 0.88552 0.92098 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.47 113.37 1.07 -0.63 16 2 S -0.04 -0.75 22.81 -56.49 -1.29 -2.04 16 3 C -0.24 -6.26 6.85 66.92 0.46 -5.80 16 4 C 0.01 0.41 10.71 83.80 0.90 1.31 16 5 N -0.47 -18.23 10.53 -187.04 -1.97 -20.20 16 6 C 0.07 2.40 6.61 88.51 0.59 2.98 16 7 C 0.14 4.87 3.89 30.53 0.12 4.99 16 8 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 9 C -0.12 -3.96 6.58 31.89 0.21 -3.75 16 10 C -0.13 -4.82 6.63 31.58 0.21 -4.61 16 11 C 0.16 7.64 2.70 30.22 0.08 7.72 16 12 H 0.04 1.87 7.19 -2.39 -0.02 1.86 16 13 C -0.52 -31.11 9.36 25.60 0.24 -30.87 16 14 H 0.04 2.87 7.58 -2.91 -0.02 2.85 16 15 C 0.03 1.79 5.47 84.65 0.46 2.25 16 16 N -0.94 -60.75 13.96 21.45 0.30 -60.45 16 17 Si 0.96 49.55 26.28 68.60 1.80 51.35 16 18 H -0.29 -15.67 7.11 99.48 0.71 -14.97 16 19 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 20 H -0.24 -11.57 6.53 99.48 0.65 -10.92 16 21 O -0.39 -19.04 8.73 -148.98 -1.30 -20.34 16 22 S 0.16 4.26 23.43 -56.49 -1.32 2.93 16 23 H 0.09 1.04 8.05 -2.39 -0.02 1.02 16 24 H 0.09 1.09 8.06 -2.39 -0.02 1.07 16 25 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.18 4.63 7.00 -2.91 -0.02 4.61 16 27 H 0.06 2.16 8.05 -2.39 -0.02 2.14 16 28 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 30 H 0.06 2.46 7.40 -2.39 -0.02 2.45 16 31 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -75.29 288.98 1.64 -73.65 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.08 Total: 1.51 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 4.34 Total: -26.41 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -1.67 Total: -80.65 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -1.30 Total: -20.34 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 1.80 Total: 51.35 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -2.61 Total: 0.90 kcal Total: -75.29 1.64 -73.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712887592.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.041 kcal (2) G-P(sol) polarization free energy of solvation -75.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds